Gchil10148.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10148.t1
Unique NameGchil10148.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1324864..1325994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog666509.RCA23_c27070
PFAMsADH_N,ADH_zinc_N
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273
KEGG koko:K00001
KEGG ReactionR00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220
Evalue9.66e-109
EggNOG OGsCOG0604@1|root,COG0604@2|Bacteria,1MX8A@1224|Proteobacteria,2TUVG@28211|Alphaproteobacteria
EC1.1.1.1
Descriptionalcohol dehydrogenase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10148Gchil10148Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1324864..1325994 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10148.t1.stop1Gchil10148.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1324864..1324866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10148.t1.CDS1Gchil10148.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1324864..1325994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10148.t1.exon1Gchil10148.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1324864..1325994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10148.t1.start1Gchil10148.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1325992..1325994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10148.t1Gchil10148.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1324864..1325994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10148.t1 ID=Gchil10148.t1|Name=Gchil10148.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=377bp
MVTHDVPKYMTAAVLLCHGTPENLVISHEVPVPKLLRGEALIRVRACGVN
NTDINTRLGWYDSSVQEGTCDLVTDSDKVRNDFEGTWSGLPMAFPRIQGA
DVVGDVVAVGDDVEDSWIGCRVLVDPGLRQDVREGQYEGFAYLGSERDGG
FAQFAAVPVQNLVKVNSTWTDEELATLPCSYTTAENMLDNAQVGENDVVL
VTGASGGVGSALVQLTKRRKAKVIALTSMKKADLVLSSGADCVIRRGIDD
WEEVIRETTGRGKVSVVADVVGAPVFEQVMQVLGKGGRYVTSGAIAGKMV
QVDLSQLYLNDWRMIGCTVTRSEVMRNLVSYVERDEIRPLLAGVFPLQKI
HEVEKLFLEKKHCGKYVLVPPPSTHM*
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spliced messenger RNA

>Gchil10148.t1 ID=Gchil10148.t1|Name=Gchil10148.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004442_pilon:1324864..1325994- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACCCACGATGTTCCCAAGTATATGACCGCAGCAGTGTTGCTGTG
TCATGGCACTCCGGAGAATTTGGTGATCAGTCACGAGGTCCCAGTCCCAA
AGCTGCTGAGGGGCGAAGCGTTGATTCGAGTACGCGCTTGCGGAGTAAAC
AACACTGACATCAACACCCGTCTCGGTTGGTATGATTCATCCGTTCAAGA
GGGGACGTGTGATCTGGTCACTGATTCTGACAAAGTGCGCAATGATTTTG
AAGGTACTTGGAGTGGCTTGCCCATGGCCTTTCCTCGTATTCAAGGTGCT
GATGTTGTCGGAGATGTTGTGGCAGTGGGGGACGATGTAGAAGATTCTTG
GATTGGCTGTCGTGTGTTGGTGGATCCTGGATTGAGACAGGATGTCCGGG
AAGGCCAGTACGAAGGGTTTGCATACCTCGGAAGTGAACGCGACGGTGGA
TTTGCTCAGTTTGCTGCAGTTCCAGTACAAAATTTGGTCAAAGTCAATTC
GACGTGGACGGATGAAGAACTGGCGACTTTACCGTGCTCGTACACGACGG
CGGAGAATATGCTTGATAACGCCCAGGTTGGGGAAAATGATGTTGTGTTG
GTAACTGGTGCCTCTGGAGGTGTGGGCAGTGCATTGGTTCAATTAACCAA
GAGAAGGAAGGCCAAGGTGATAGCTTTAACATCTATGAAAAAGGCTGATT
TGGTTTTATCGTCTGGGGCCGATTGCGTAATTCGAAGGGGAATTGATGAC
TGGGAAGAAGTCATTCGAGAAACTACAGGTCGCGGAAAGGTATCTGTTGT
AGCCGATGTTGTCGGTGCACCGGTATTTGAACAGGTAATGCAAGTGCTGG
GTAAAGGCGGGCGGTATGTGACCTCTGGGGCAATAGCAGGGAAGATGGTG
CAAGTGGACTTGAGCCAGCTGTATCTGAACGACTGGCGAATGATCGGATG
CACGGTGACACGATCAGAGGTGATGCGTAATTTAGTCAGCTATGTTGAGA
GGGACGAAATTCGTCCGCTGTTGGCCGGTGTATTTCCGTTACAGAAAATC
CACGAGGTTGAGAAACTGTTTCTGGAAAAGAAGCACTGTGGAAAATATGT
CCTTGTTCCGCCACCCTCGACGCATATGTAA
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protein sequence of Gchil10148.t1

>Gchil10148.t1 ID=Gchil10148.t1|Name=Gchil10148.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=377bp
MVTHDVPKYMTAAVLLCHGTPENLVISHEVPVPKLLRGEALIRVRACGVN
NTDINTRLGWYDSSVQEGTCDLVTDSDKVRNDFEGTWSGLPMAFPRIQGA
DVVGDVVAVGDDVEDSWIGCRVLVDPGLRQDVREGQYEGFAYLGSERDGG
FAQFAAVPVQNLVKVNSTWTDEELATLPCSYTTAENMLDNAQVGENDVVL
VTGASGGVGSALVQLTKRRKAKVIALTSMKKADLVLSSGADCVIRRGIDD
WEEVIRETTGRGKVSVVADVVGAPVFEQVMQVLGKGGRYVTSGAIAGKMV
QVDLSQLYLNDWRMIGCTVTRSEVMRNLVSYVERDEIRPLLAGVFPLQKI
HEVEKLFLEKKHCGKYVLVPPPSTHM*
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mRNA from alignment at tig00004442_pilon:1324864..1325994-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10148.t1 ID=Gchil10148.t1|Name=Gchil10148.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004442_pilon:1324864..1325994- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAACCCACGATGTTCCCAAGTATATGACCGCAGCAGTGTTGCTGTG
TCATGGCACTCCGGAGAATTTGGTGATCAGTCACGAGGTCCCAGTCCCAA
AGCTGCTGAGGGGCGAAGCGTTGATTCGAGTACGCGCTTGCGGAGTAAAC
AACACTGACATCAACACCCGTCTCGGTTGGTATGATTCATCCGTTCAAGA
GGGGACGTGTGATCTGGTCACTGATTCTGACAAAGTGCGCAATGATTTTG
AAGGTACTTGGAGTGGCTTGCCCATGGCCTTTCCTCGTATTCAAGGTGCT
GATGTTGTCGGAGATGTTGTGGCAGTGGGGGACGATGTAGAAGATTCTTG
GATTGGCTGTCGTGTGTTGGTGGATCCTGGATTGAGACAGGATGTCCGGG
AAGGCCAGTACGAAGGGTTTGCATACCTCGGAAGTGAACGCGACGGTGGA
TTTGCTCAGTTTGCTGCAGTTCCAGTACAAAATTTGGTCAAAGTCAATTC
GACGTGGACGGATGAAGAACTGGCGACTTTACCGTGCTCGTACACGACGG
CGGAGAATATGCTTGATAACGCCCAGGTTGGGGAAAATGATGTTGTGTTG
GTAACTGGTGCCTCTGGAGGTGTGGGCAGTGCATTGGTTCAATTAACCAA
GAGAAGGAAGGCCAAGGTGATAGCTTTAACATCTATGAAAAAGGCTGATT
TGGTTTTATCGTCTGGGGCCGATTGCGTAATTCGAAGGGGAATTGATGAC
TGGGAAGAAGTCATTCGAGAAACTACAGGTCGCGGAAAGGTATCTGTTGT
AGCCGATGTTGTCGGTGCACCGGTATTTGAACAGGTAATGCAAGTGCTGG
GTAAAGGCGGGCGGTATGTGACCTCTGGGGCAATAGCAGGGAAGATGGTG
CAAGTGGACTTGAGCCAGCTGTATCTGAACGACTGGCGAATGATCGGATG
CACGGTGACACGATCAGAGGTGATGCGTAATTTAGTCAGCTATGTTGAGA
GGGACGAAATTCGTCCGCTGTTGGCCGGTGTATTTCCGTTACAGAAAATC
CACGAGGTTGAGAAACTGTTTCTGGAAAAGAAGCACTGTGGAAAATATGT
CCTTGTTCCGCCACCCTCGACGCATATGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1324864..1325994-

>Gchil10148.t1 ID=Gchil10148.t1|Name=Gchil10148.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00004442_pilon:1324864..1325994- (Gracilaria chilensis NLEC103_M9 male)
ATGGTAACCCACGATGTTCCCAAGTATATGACCGCAGCAGTGTTGCTGTG
TCATGGCACTCCGGAGAATTTGGTGATCAGTCACGAGGTCCCAGTCCCAA
AGCTGCTGAGGGGCGAAGCGTTGATTCGAGTACGCGCTTGCGGAGTAAAC
AACACTGACATCAACACCCGTCTCGGTTGGTATGATTCATCCGTTCAAGA
GGGGACGTGTGATCTGGTCACTGATTCTGACAAAGTGCGCAATGATTTTG
AAGGTACTTGGAGTGGCTTGCCCATGGCCTTTCCTCGTATTCAAGGTGCT
GATGTTGTCGGAGATGTTGTGGCAGTGGGGGACGATGTAGAAGATTCTTG
GATTGGCTGTCGTGTGTTGGTGGATCCTGGATTGAGACAGGATGTCCGGG
AAGGCCAGTACGAAGGGTTTGCATACCTCGGAAGTGAACGCGACGGTGGA
TTTGCTCAGTTTGCTGCAGTTCCAGTACAAAATTTGGTCAAAGTCAATTC
GACGTGGACGGATGAAGAACTGGCGACTTTACCGTGCTCGTACACGACGG
CGGAGAATATGCTTGATAACGCCCAGGTTGGGGAAAATGATGTTGTGTTG
GTAACTGGTGCCTCTGGAGGTGTGGGCAGTGCATTGGTTCAATTAACCAA
GAGAAGGAAGGCCAAGGTGATAGCTTTAACATCTATGAAAAAGGCTGATT
TGGTTTTATCGTCTGGGGCCGATTGCGTAATTCGAAGGGGAATTGATGAC
TGGGAAGAAGTCATTCGAGAAACTACAGGTCGCGGAAAGGTATCTGTTGT
AGCCGATGTTGTCGGTGCACCGGTATTTGAACAGGTAATGCAAGTGCTGG
GTAAAGGCGGGCGGTATGTGACCTCTGGGGCAATAGCAGGGAAGATGGTG
CAAGTGGACTTGAGCCAGCTGTATCTGAACGACTGGCGAATGATCGGATG
CACGGTGACACGATCAGAGGTGATGCGTAATTTAGTCAGCTATGTTGAGA
GGGACGAAATTCGTCCGCTGTTGGCCGGTGTATTTCCGTTACAGAAAATC
CACGAGGTTGAGAAACTGTTTCTGGAAAAGAAGCACTGTGGAAAATATGT
CCTTGTTCCGCCACCCTCGACGCATATGTAA
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