Gchil10145.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10145.t1
Unique NameGchil10145.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1316685..1317371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726232
Preferred nameWBSCR27
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl2759|Eukaryota
Evalue2.6e-27
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,38WYI@33154|Opisthokonta,3BN4F@33208|Metazoa
DescriptionMethyltransferase domain
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10145Gchil10145Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1316685..1317371 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10145.t1.start1Gchil10145.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1316685..1316687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10145.t1.CDS1Gchil10145.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1316685..1317371 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10145.t1.exon1Gchil10145.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1316685..1317371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10145.t1.stop1Gchil10145.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1317369..1317371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10145.t1Gchil10145.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1316685..1317371 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10145.t1 ID=Gchil10145.t1|Name=Gchil10145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=229bp
MSPIVKSDSTESGNYAQHDIHRLVMTAPAVHQRVKAYGQWAPNYDEDVFK
MNYSGYLTAVDRLKDQILKEECCLGKKVLRILDAGCGTGLCGTQLELLSH
KHDIRFHIIGVDSSEDMLALAKKRNIYNELLVMDLNCPFSIQEFDYCVAS
GVFLEGHCKADALRNILEVLRPGGSASISIRHKHFVADEEAYREAIRKSH
CEIVKNDVLEYLTETLANYMVIRKTKSA*
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spliced messenger RNA

>Gchil10145.t1 ID=Gchil10145.t1|Name=Gchil10145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00004442_pilon:1316685..1317371+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGATTGTTAAGTCTGACTCAACCGAAAGCGGAAATTATGCACA
ACATGATATACACCGTCTCGTCATGACTGCACCCGCGGTGCACCAGAGGG
TCAAGGCATACGGTCAATGGGCGCCCAACTACGATGAAGATGTGTTTAAA
ATGAACTACTCAGGCTACTTGACTGCTGTGGATCGTTTGAAGGATCAAAT
TTTAAAAGAAGAATGTTGTCTCGGGAAGAAGGTCCTACGTATTCTAGATG
CTGGCTGCGGCACTGGCCTGTGTGGTACGCAACTGGAATTGTTGAGCCAC
AAACATGATATTCGCTTTCACATTATCGGAGTTGATTCCAGTGAAGATAT
GCTTGCTCTAGCGAAGAAAAGAAACATTTACAACGAATTGCTGGTGATGG
ACCTGAATTGTCCGTTTTCAATCCAAGAATTCGATTATTGCGTTGCATCA
GGCGTTTTTTTGGAAGGACACTGCAAAGCAGACGCCCTAAGGAACATTCT
GGAGGTACTTCGTCCTGGAGGGTCCGCCTCTATTTCTATACGCCACAAGC
ATTTCGTTGCTGATGAGGAAGCCTACCGTGAGGCCATTCGCAAAAGCCAC
TGCGAAATTGTGAAGAATGATGTACTTGAGTACCTGACTGAAACGCTGGC
AAACTACATGGTCATTCGGAAGACTAAAAGCGCTTAA
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protein sequence of Gchil10145.t1

>Gchil10145.t1 ID=Gchil10145.t1|Name=Gchil10145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=229bp
MSPIVKSDSTESGNYAQHDIHRLVMTAPAVHQRVKAYGQWAPNYDEDVFK
MNYSGYLTAVDRLKDQILKEECCLGKKVLRILDAGCGTGLCGTQLELLSH
KHDIRFHIIGVDSSEDMLALAKKRNIYNELLVMDLNCPFSIQEFDYCVAS
GVFLEGHCKADALRNILEVLRPGGSASISIRHKHFVADEEAYREAIRKSH
CEIVKNDVLEYLTETLANYMVIRKTKSA*
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mRNA from alignment at tig00004442_pilon:1316685..1317371+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10145.t1 ID=Gchil10145.t1|Name=Gchil10145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00004442_pilon:1316685..1317371+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCGATTGTTAAGTCTGACTCAACCGAAAGCGGAAATTATGCACA
ACATGATATACACCGTCTCGTCATGACTGCACCCGCGGTGCACCAGAGGG
TCAAGGCATACGGTCAATGGGCGCCCAACTACGATGAAGATGTGTTTAAA
ATGAACTACTCAGGCTACTTGACTGCTGTGGATCGTTTGAAGGATCAAAT
TTTAAAAGAAGAATGTTGTCTCGGGAAGAAGGTCCTACGTATTCTAGATG
CTGGCTGCGGCACTGGCCTGTGTGGTACGCAACTGGAATTGTTGAGCCAC
AAACATGATATTCGCTTTCACATTATCGGAGTTGATTCCAGTGAAGATAT
GCTTGCTCTAGCGAAGAAAAGAAACATTTACAACGAATTGCTGGTGATGG
ACCTGAATTGTCCGTTTTCAATCCAAGAATTCGATTATTGCGTTGCATCA
GGCGTTTTTTTGGAAGGACACTGCAAAGCAGACGCCCTAAGGAACATTCT
GGAGGTACTTCGTCCTGGAGGGTCCGCCTCTATTTCTATACGCCACAAGC
ATTTCGTTGCTGATGAGGAAGCCTACCGTGAGGCCATTCGCAAAAGCCAC
TGCGAAATTGTGAAGAATGATGTACTTGAGTACCTGACTGAAACGCTGGC
AAACTACATGGTCATTCGGAAGACTAAAAGCGCTTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1316685..1317371+

>Gchil10145.t1 ID=Gchil10145.t1|Name=Gchil10145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00004442_pilon:1316685..1317371+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCGATTGTTAAGTCTGACTCAACCGAAAGCGGAAATTATGCACA
ACATGATATACACCGTCTCGTCATGACTGCACCCGCGGTGCACCAGAGGG
TCAAGGCATACGGTCAATGGGCGCCCAACTACGATGAAGATGTGTTTAAA
ATGAACTACTCAGGCTACTTGACTGCTGTGGATCGTTTGAAGGATCAAAT
TTTAAAAGAAGAATGTTGTCTCGGGAAGAAGGTCCTACGTATTCTAGATG
CTGGCTGCGGCACTGGCCTGTGTGGTACGCAACTGGAATTGTTGAGCCAC
AAACATGATATTCGCTTTCACATTATCGGAGTTGATTCCAGTGAAGATAT
GCTTGCTCTAGCGAAGAAAAGAAACATTTACAACGAATTGCTGGTGATGG
ACCTGAATTGTCCGTTTTCAATCCAAGAATTCGATTATTGCGTTGCATCA
GGCGTTTTTTTGGAAGGACACTGCAAAGCAGACGCCCTAAGGAACATTCT
GGAGGTACTTCGTCCTGGAGGGTCCGCCTCTATTTCTATACGCCACAAGC
ATTTCGTTGCTGATGAGGAAGCCTACCGTGAGGCCATTCGCAAAAGCCAC
TGCGAAATTGTGAAGAATGATGTACTTGAGTACCTGACTGAAACGCTGGC
AAACTACATGGTCATTCGGAAGACTAAAAGCGCTTAA
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