Gchil10144.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10144.t1
Unique Name	Gchil10144.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	321

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1314380..1315342 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102129.Lepto7375DRAFT_5535
PFAMs	2OG-FeII_Oxy,DIOX_N
Max annot lvl	1117\|Cyanobacteria
Evalue	1.6e-92
EggNOG OGs	COG3491@1\|root,COG3491@2\|Bacteria,1G3TW@1117\|Cyanobacteria,1HCQE@1150\|Oscillatoriales
Description	Belongs to the iron ascorbate-dependent oxidoreductase family
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10144	Gchil10144	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1314380..1315342 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10144.t1.start1	Gchil10144.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1314380..1314382 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10144.t1.CDS1	Gchil10144.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1314380..1315342 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10144.t1.exon1	Gchil10144.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1314380..1315342 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10144.t1.stop1	Gchil10144.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1315340..1315342 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10144.t1	Gchil10144.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1314380..1315342 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1314380..1315342+
coding sequence from alignment at tig00004442_pilon:1314380..1315342+

mRNA sequence

>Gchil10144.t1 ID=Gchil10144.t1|Name=Gchil10144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp
MPVTHQSTVSELPTISLTALSSPDKPTHQLEVSRLLRICETRGFFYLCDH
GIPIFLIDRAIKASRAFFHLPKHTKEKFGHHAHNVQPPSCRGYSAAEKLN
EDTGFDAKQLYDLGIERENVPGKRFTGPNLLPSEEVAPDFAASLLELQEN
VMNEIAPTLYRALGEALGVGSGFFEQFLKEPTLIQRVIYYPARKGTAGKH
TDNGLITILIQERSVDRSLKVYTEGMWTGAEARDDLLVVNLGDILQFWTG
AQFISTPHQVVHEGEKDRISLPFFIYPDIDATFEPFGEPGKKVRVIDVMD
RNFQNIWVTGKGAGRARELK*

spliced messenger RNA

>Gchil10144.t1 ID=Gchil10144.t1|Name=Gchil10144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004442_pilon:1314380..1315342+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGTTACCCATCAATCCACCGTCTCTGAGCTCCCTACCATTTCCCT
CACGGCACTCTCCTCGCCCGACAAACCAACACACCAACTTGAAGTTTCCC
GTTTACTTCGTATCTGTGAAACTCGCGGTTTTTTCTACCTCTGCGACCAT
GGCATCCCTATATTCCTCATTGACCGCGCGATCAAAGCATCCCGTGCTTT
TTTTCATCTCCCGAAGCACACTAAGGAAAAATTTGGCCACCATGCCCATA
ACGTTCAACCACCGTCGTGTAGGGGCTACTCTGCTGCCGAGAAGCTTAAT
GAGGACACGGGTTTTGATGCTAAACAGCTCTACGACCTGGGCATAGAGCG
CGAAAATGTCCCCGGGAAAAGATTCACGGGACCCAATTTGCTGCCCAGCG
AAGAAGTCGCCCCCGACTTTGCGGCTTCGCTGTTGGAATTGCAGGAAAAT
GTCATGAACGAAATCGCGCCTACATTATACCGTGCACTTGGAGAGGCGCT
CGGAGTGGGTAGCGGGTTTTTCGAACAGTTCTTGAAAGAACCAACTCTAA
TCCAACGTGTGATTTATTATCCCGCACGAAAAGGCACGGCAGGGAAGCAC
ACAGACAATGGATTAATTACCATTTTGATTCAGGAAAGGAGTGTCGATCG
CTCGCTGAAGGTGTATACTGAAGGCATGTGGACTGGCGCCGAGGCAAGAG
ACGATTTACTCGTCGTTAACTTGGGCGACATTCTTCAATTTTGGACAGGC
GCTCAGTTCATCTCGACTCCTCACCAGGTGGTACATGAAGGGGAAAAGGA
CCGGATCTCGCTCCCATTCTTCATCTACCCTGATATTGATGCAACGTTTG
AACCGTTTGGGGAGCCAGGGAAGAAAGTGAGAGTGATCGATGTGATGGAC
AGAAACTTTCAGAACATTTGGGTTACCGGAAAGGGAGCTGGTCGAGCTCG
AGAGCTGAAATAG

protein sequence of Gchil10144.t1

>Gchil10144.t1 ID=Gchil10144.t1|Name=Gchil10144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=321bp
MPVTHQSTVSELPTISLTALSSPDKPTHQLEVSRLLRICETRGFFYLCDH
GIPIFLIDRAIKASRAFFHLPKHTKEKFGHHAHNVQPPSCRGYSAAEKLN
EDTGFDAKQLYDLGIERENVPGKRFTGPNLLPSEEVAPDFAASLLELQEN
VMNEIAPTLYRALGEALGVGSGFFEQFLKEPTLIQRVIYYPARKGTAGKH
TDNGLITILIQERSVDRSLKVYTEGMWTGAEARDDLLVVNLGDILQFWTG
AQFISTPHQVVHEGEKDRISLPFFIYPDIDATFEPFGEPGKKVRVIDVMD
RNFQNIWVTGKGAGRARELK*

mRNA from alignment at tig00004442_pilon:1314380..1315342+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10144.t1 ID=Gchil10144.t1|Name=Gchil10144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004442_pilon:1314380..1315342+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGTTACCCATCAATCCACCGTCTCTGAGCTCCCTACCATTTCCCT
CACGGCACTCTCCTCGCCCGACAAACCAACACACCAACTTGAAGTTTCCC
GTTTACTTCGTATCTGTGAAACTCGCGGTTTTTTCTACCTCTGCGACCAT
GGCATCCCTATATTCCTCATTGACCGCGCGATCAAAGCATCCCGTGCTTT
TTTTCATCTCCCGAAGCACACTAAGGAAAAATTTGGCCACCATGCCCATA
ACGTTCAACCACCGTCGTGTAGGGGCTACTCTGCTGCCGAGAAGCTTAAT
GAGGACACGGGTTTTGATGCTAAACAGCTCTACGACCTGGGCATAGAGCG
CGAAAATGTCCCCGGGAAAAGATTCACGGGACCCAATTTGCTGCCCAGCG
AAGAAGTCGCCCCCGACTTTGCGGCTTCGCTGTTGGAATTGCAGGAAAAT
GTCATGAACGAAATCGCGCCTACATTATACCGTGCACTTGGAGAGGCGCT
CGGAGTGGGTAGCGGGTTTTTCGAACAGTTCTTGAAAGAACCAACTCTAA
TCCAACGTGTGATTTATTATCCCGCACGAAAAGGCACGGCAGGGAAGCAC
ACAGACAATGGATTAATTACCATTTTGATTCAGGAAAGGAGTGTCGATCG
CTCGCTGAAGGTGTATACTGAAGGCATGTGGACTGGCGCCGAGGCAAGAG
ACGATTTACTCGTCGTTAACTTGGGCGACATTCTTCAATTTTGGACAGGC
GCTCAGTTCATCTCGACTCCTCACCAGGTGGTACATGAAGGGGAAAAGGA
CCGGATCTCGCTCCCATTCTTCATCTACCCTGATATTGATGCAACGTTTG
AACCGTTTGGGGAGCCAGGGAAGAAAGTGAGAGTGATCGATGTGATGGAC
AGAAACTTTCAGAACATTTGGGTTACCGGAAAGGGAGCTGGTCGAGCTCG
AGAGCTGAAATAG

Coding sequence (CDS) from alignment at tig00004442_pilon:1314380..1315342+

>Gchil10144.t1 ID=Gchil10144.t1|Name=Gchil10144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00004442_pilon:1314380..1315342+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGTTACCCATCAATCCACCGTCTCTGAGCTCCCTACCATTTCCCT
CACGGCACTCTCCTCGCCCGACAAACCAACACACCAACTTGAAGTTTCCC
GTTTACTTCGTATCTGTGAAACTCGCGGTTTTTTCTACCTCTGCGACCAT
GGCATCCCTATATTCCTCATTGACCGCGCGATCAAAGCATCCCGTGCTTT
TTTTCATCTCCCGAAGCACACTAAGGAAAAATTTGGCCACCATGCCCATA
ACGTTCAACCACCGTCGTGTAGGGGCTACTCTGCTGCCGAGAAGCTTAAT
GAGGACACGGGTTTTGATGCTAAACAGCTCTACGACCTGGGCATAGAGCG
CGAAAATGTCCCCGGGAAAAGATTCACGGGACCCAATTTGCTGCCCAGCG
AAGAAGTCGCCCCCGACTTTGCGGCTTCGCTGTTGGAATTGCAGGAAAAT
GTCATGAACGAAATCGCGCCTACATTATACCGTGCACTTGGAGAGGCGCT
CGGAGTGGGTAGCGGGTTTTTCGAACAGTTCTTGAAAGAACCAACTCTAA
TCCAACGTGTGATTTATTATCCCGCACGAAAAGGCACGGCAGGGAAGCAC
ACAGACAATGGATTAATTACCATTTTGATTCAGGAAAGGAGTGTCGATCG
CTCGCTGAAGGTGTATACTGAAGGCATGTGGACTGGCGCCGAGGCAAGAG
ACGATTTACTCGTCGTTAACTTGGGCGACATTCTTCAATTTTGGACAGGC
GCTCAGTTCATCTCGACTCCTCACCAGGTGGTACATGAAGGGGAAAAGGA
CCGGATCTCGCTCCCATTCTTCATCTACCCTGATATTGATGCAACGTTTG
AACCGTTTGGGGAGCCAGGGAAGAAAGTGAGAGTGATCGATGTGATGGAC
AGAAACTTTCAGAACATTTGGGTTACCGGAAAGGGAGCTGGTCGAGCTCG
AGAGCTGAAATAG