Gchil10143.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10143.t1
Unique NameGchil10143.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1288373..1289551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_12433T0
Max annot lvl2759|Eukaryota
Evalue3.67e-06
EggNOG OGs2E93I@1|root,2SFHA@2759|Eukaryota,3AV0X@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10143Gchil10143Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1288373..1289551 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10143.t1.stop1Gchil10143.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1288373..1288375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10143.t1.CDS1Gchil10143.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1288373..1289551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10143.t1.exon1Gchil10143.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1288373..1289551 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10143.t1.start1Gchil10143.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1289549..1289551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10143.t1Gchil10143.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1288373..1289551 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10143.t1 ID=Gchil10143.t1|Name=Gchil10143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=393bp
MRHRPHLCFIAVLIHVCFVHASVAPTRTPTSIQTSTPTRSTTPSPTPSLS
PTPTPEVVIEHIVQEHLINRYIKWHRQQRHQAPRLVLRFDEPHPGVGDRF
LSLVTAFVMASFSDRVLLLDWIQPNSIFQFFLPTQIRDLKFKEEDRLEEQ
KSKSVYVCDRLCARPLSLEQVLRPEHFVIFSQGTTTNAHYLCGHFTRRHP
QLALSRTFSNVSESLNNVPPKMFSAIFNAMLKPSPRLHQLLEERSSLLQR
PFIGVHARLGTGLGEKGIRFPADLSPMRIASCLASPALQIGKKYGVHDFY
LATDTVSFRDIFEKVLKKKNSKANMIRFDDIVPVHTKGCQLNITECFNTM
IELVLLSKSKHIVAIKSSFSKAAGYIGNVTVDSQGFATQCVK*
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spliced messenger RNA

>Gchil10143.t1 ID=Gchil10143.t1|Name=Gchil10143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00004442_pilon:1288373..1289551- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCACCGACCGCATTTATGTTTCATAGCTGTTCTCATTCACGTATG
TTTTGTACATGCTTCAGTCGCACCAACCCGAACGCCAACATCAATTCAAA
CATCTACTCCCACTCGCTCAACAACGCCCTCCCCAACGCCATCTCTATCG
CCCACTCCGACCCCAGAGGTTGTCATCGAGCACATAGTGCAAGAGCACCT
AATTAATCGCTATATAAAATGGCATCGGCAGCAGCGCCACCAAGCGCCAA
GGCTTGTCCTTCGATTTGATGAACCGCATCCCGGAGTTGGTGATCGTTTT
CTCTCCCTCGTCACCGCATTCGTAATGGCTTCGTTTTCTGACCGAGTATT
ACTGCTGGACTGGATACAGCCAAACTCTATATTCCAGTTCTTCTTACCGA
CCCAGATTCGTGACTTGAAATTTAAAGAGGAGGATCGTCTCGAGGAGCAA
AAGTCGAAGTCCGTTTACGTTTGTGACCGCTTGTGTGCGAGACCGTTGTC
TTTGGAACAGGTTTTGCGTCCCGAACATTTTGTCATTTTCTCACAGGGAA
CTACAACCAACGCTCATTATCTCTGCGGGCATTTTACCAGGCGACACCCG
CAGCTTGCGCTCTCGCGAACGTTTTCGAACGTGTCTGAATCTTTAAACAA
TGTTCCACCAAAGATGTTTTCCGCCATATTCAACGCCATGCTCAAGCCCT
CGCCTCGTCTACATCAATTGCTCGAGGAAAGGAGCTCCCTACTTCAAAGG
CCTTTCATTGGCGTTCATGCCCGATTAGGAACAGGCCTTGGGGAAAAAGG
CATCAGATTTCCCGCGGACCTCAGTCCAATGCGAATTGCTTCGTGTTTGG
CTTCTCCTGCATTGCAAATTGGGAAGAAGTACGGCGTGCACGACTTCTAC
CTCGCGACGGATACCGTCTCCTTTCGCGATATATTTGAAAAAGTGCTCAA
GAAGAAGAACTCGAAGGCCAATATGATCCGGTTCGACGATATTGTGCCTG
TACATACGAAGGGTTGCCAGTTAAATATCACAGAATGTTTCAATACCATG
ATCGAGCTCGTTTTATTGTCCAAAAGCAAGCATATTGTCGCTATAAAGAG
CAGTTTCTCAAAAGCGGCTGGATACATTGGGAATGTTACCGTTGACTCCC
AAGGATTTGCTACACAATGCGTGAAATAA
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protein sequence of Gchil10143.t1

>Gchil10143.t1 ID=Gchil10143.t1|Name=Gchil10143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=393bp
MRHRPHLCFIAVLIHVCFVHASVAPTRTPTSIQTSTPTRSTTPSPTPSLS
PTPTPEVVIEHIVQEHLINRYIKWHRQQRHQAPRLVLRFDEPHPGVGDRF
LSLVTAFVMASFSDRVLLLDWIQPNSIFQFFLPTQIRDLKFKEEDRLEEQ
KSKSVYVCDRLCARPLSLEQVLRPEHFVIFSQGTTTNAHYLCGHFTRRHP
QLALSRTFSNVSESLNNVPPKMFSAIFNAMLKPSPRLHQLLEERSSLLQR
PFIGVHARLGTGLGEKGIRFPADLSPMRIASCLASPALQIGKKYGVHDFY
LATDTVSFRDIFEKVLKKKNSKANMIRFDDIVPVHTKGCQLNITECFNTM
IELVLLSKSKHIVAIKSSFSKAAGYIGNVTVDSQGFATQCVK*
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mRNA from alignment at tig00004442_pilon:1288373..1289551-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10143.t1 ID=Gchil10143.t1|Name=Gchil10143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00004442_pilon:1288373..1289551- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCACCGACCGCATTTATGTTTCATAGCTGTTCTCATTCACGTATG
TTTTGTACATGCTTCAGTCGCACCAACCCGAACGCCAACATCAATTCAAA
CATCTACTCCCACTCGCTCAACAACGCCCTCCCCAACGCCATCTCTATCG
CCCACTCCGACCCCAGAGGTTGTCATCGAGCACATAGTGCAAGAGCACCT
AATTAATCGCTATATAAAATGGCATCGGCAGCAGCGCCACCAAGCGCCAA
GGCTTGTCCTTCGATTTGATGAACCGCATCCCGGAGTTGGTGATCGTTTT
CTCTCCCTCGTCACCGCATTCGTAATGGCTTCGTTTTCTGACCGAGTATT
ACTGCTGGACTGGATACAGCCAAACTCTATATTCCAGTTCTTCTTACCGA
CCCAGATTCGTGACTTGAAATTTAAAGAGGAGGATCGTCTCGAGGAGCAA
AAGTCGAAGTCCGTTTACGTTTGTGACCGCTTGTGTGCGAGACCGTTGTC
TTTGGAACAGGTTTTGCGTCCCGAACATTTTGTCATTTTCTCACAGGGAA
CTACAACCAACGCTCATTATCTCTGCGGGCATTTTACCAGGCGACACCCG
CAGCTTGCGCTCTCGCGAACGTTTTCGAACGTGTCTGAATCTTTAAACAA
TGTTCCACCAAAGATGTTTTCCGCCATATTCAACGCCATGCTCAAGCCCT
CGCCTCGTCTACATCAATTGCTCGAGGAAAGGAGCTCCCTACTTCAAAGG
CCTTTCATTGGCGTTCATGCCCGATTAGGAACAGGCCTTGGGGAAAAAGG
CATCAGATTTCCCGCGGACCTCAGTCCAATGCGAATTGCTTCGTGTTTGG
CTTCTCCTGCATTGCAAATTGGGAAGAAGTACGGCGTGCACGACTTCTAC
CTCGCGACGGATACCGTCTCCTTTCGCGATATATTTGAAAAAGTGCTCAA
GAAGAAGAACTCGAAGGCCAATATGATCCGGTTCGACGATATTGTGCCTG
TACATACGAAGGGTTGCCAGTTAAATATCACAGAATGTTTCAATACCATG
ATCGAGCTCGTTTTATTGTCCAAAAGCAAGCATATTGTCGCTATAAAGAG
CAGTTTCTCAAAAGCGGCTGGATACATTGGGAATGTTACCGTTGACTCCC
AAGGATTTGCTACACAATGCGTGAAATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1288373..1289551-

>Gchil10143.t1 ID=Gchil10143.t1|Name=Gchil10143.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00004442_pilon:1288373..1289551- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCACCGACCGCATTTATGTTTCATAGCTGTTCTCATTCACGTATG
TTTTGTACATGCTTCAGTCGCACCAACCCGAACGCCAACATCAATTCAAA
CATCTACTCCCACTCGCTCAACAACGCCCTCCCCAACGCCATCTCTATCG
CCCACTCCGACCCCAGAGGTTGTCATCGAGCACATAGTGCAAGAGCACCT
AATTAATCGCTATATAAAATGGCATCGGCAGCAGCGCCACCAAGCGCCAA
GGCTTGTCCTTCGATTTGATGAACCGCATCCCGGAGTTGGTGATCGTTTT
CTCTCCCTCGTCACCGCATTCGTAATGGCTTCGTTTTCTGACCGAGTATT
ACTGCTGGACTGGATACAGCCAAACTCTATATTCCAGTTCTTCTTACCGA
CCCAGATTCGTGACTTGAAATTTAAAGAGGAGGATCGTCTCGAGGAGCAA
AAGTCGAAGTCCGTTTACGTTTGTGACCGCTTGTGTGCGAGACCGTTGTC
TTTGGAACAGGTTTTGCGTCCCGAACATTTTGTCATTTTCTCACAGGGAA
CTACAACCAACGCTCATTATCTCTGCGGGCATTTTACCAGGCGACACCCG
CAGCTTGCGCTCTCGCGAACGTTTTCGAACGTGTCTGAATCTTTAAACAA
TGTTCCACCAAAGATGTTTTCCGCCATATTCAACGCCATGCTCAAGCCCT
CGCCTCGTCTACATCAATTGCTCGAGGAAAGGAGCTCCCTACTTCAAAGG
CCTTTCATTGGCGTTCATGCCCGATTAGGAACAGGCCTTGGGGAAAAAGG
CATCAGATTTCCCGCGGACCTCAGTCCAATGCGAATTGCTTCGTGTTTGG
CTTCTCCTGCATTGCAAATTGGGAAGAAGTACGGCGTGCACGACTTCTAC
CTCGCGACGGATACCGTCTCCTTTCGCGATATATTTGAAAAAGTGCTCAA
GAAGAAGAACTCGAAGGCCAATATGATCCGGTTCGACGATATTGTGCCTG
TACATACGAAGGGTTGCCAGTTAAATATCACAGAATGTTTCAATACCATG
ATCGAGCTCGTTTTATTGTCCAAAAGCAAGCATATTGTCGCTATAAAGAG
CAGTTTCTCAAAAGCGGCTGGATACATTGGGAATGTTACCGTTGACTCCC
AAGGATTTGCTACACAATGCGTGAAATAA
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