Gchil10141.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10141.t1
Unique NameGchil10141.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1256743..1258077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102129.Lepto7375DRAFT_5537
PFAMsNAD_binding_11,NAD_binding_2
Max annot lvl2|Bacteria
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
Evalue2.91e-127
EggNOG OGsCOG2084@1|root,COG2084@2|Bacteria
EC1.1.1.31
Descriptionphosphogluconate dehydrogenase (decarboxylating) activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10141Gchil10141Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1256743..1258077 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10141.t1.stop1Gchil10141.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1256743..1256745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10141.t1.CDS1Gchil10141.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1256743..1258077 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10141.t1.exon1Gchil10141.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1256743..1258077 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10141.t1.start1Gchil10141.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1258075..1258077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10141.t1Gchil10141.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1256743..1258077 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10141.t1 ID=Gchil10141.t1|Name=Gchil10141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=445bp
MNIPLKKVAFIGTGNMGRPMIHKLLEAHFIVKVYDLHKPTATEVIQSGAV
WSETPRQCAEGADIVCTCLPLPEHVLENMTGPDGCLAGMRPCSVWVDCST
TDYHNTLYIADLAKKKRVYSVEAPVSNLSHMGVDFTNMSFFAAGDVEGYE
LLREFFAVTGKIDFYVGKIGMAQSAKLLTNDMFYTAVVAFGECTALIQEA
GIPLYWWWEFIKRSKGNSVASDQFSVFLFDGSWDDSCTLEIAIKDMSLTV
AMAKEIGEYLPVTEATNEAYLASSKVYDVYKGHVQVIRLTEDDNGIALRI
PNFSAPSKYGTNKDYKHPKGFISDKFGRIRPPLPESYKAPPFEPNDKQME
TAETMGGYLLLVNEAIYNEALRLGEGMGLEKELVEKMIQWSVGTCWASDN
LQKFDEIAFENVLDSMAQYVSLSKLKLRNYPEVEKVLRSRISGQ*
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spliced messenger RNA

>Gchil10141.t1 ID=Gchil10141.t1|Name=Gchil10141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00004442_pilon:1256743..1258077- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATTCCCTTAAAGAAAGTCGCATTTATTGGTACAGGAAATATGGG
CCGTCCTATGATCCACAAGCTACTTGAAGCTCATTTTATCGTGAAGGTTT
ACGATTTACATAAGCCCACTGCCACAGAGGTGATTCAATCTGGCGCTGTT
TGGAGCGAAACCCCACGCCAATGTGCAGAAGGTGCCGACATCGTGTGCAC
ATGTCTCCCTCTTCCAGAACATGTGCTTGAAAACATGACAGGTCCTGATG
GGTGCCTTGCAGGTATGCGACCTTGCTCGGTTTGGGTCGATTGTTCTACT
ACTGATTACCACAATACATTGTATATTGCGGACTTGGCGAAGAAGAAAAG
AGTGTATTCGGTTGAAGCTCCAGTAAGCAATCTTTCGCACATGGGAGTAG
ATTTTACAAACATGAGCTTTTTCGCTGCTGGTGACGTCGAAGGATACGAA
TTACTACGGGAATTCTTCGCAGTGACAGGAAAGATTGATTTCTATGTGGG
AAAGATCGGTATGGCGCAATCCGCCAAACTTCTCACAAATGACATGTTTT
ACACAGCTGTCGTGGCTTTTGGAGAGTGCACAGCCCTCATCCAGGAGGCA
GGCATCCCGTTATATTGGTGGTGGGAATTTATCAAGCGTAGTAAAGGGAA
CTCCGTGGCGTCGGACCAATTTTCTGTGTTCTTATTCGATGGGAGCTGGG
ACGATTCCTGCACGTTGGAAATAGCTATCAAGGACATGTCACTTACTGTT
GCCATGGCAAAAGAGATAGGTGAATACTTGCCTGTAACAGAAGCCACGAA
CGAAGCATACCTCGCTTCTTCCAAAGTTTACGATGTCTACAAGGGGCATG
TACAGGTCATTCGATTAACCGAAGATGATAACGGCATTGCGCTACGCATC
CCAAACTTTTCAGCACCTTCTAAGTATGGAACAAACAAAGATTACAAACA
CCCAAAAGGATTCATTTCCGACAAGTTTGGACGGATTCGCCCTCCGCTGC
CGGAGTCGTACAAAGCCCCACCGTTTGAGCCCAATGATAAACAAATGGAA
ACTGCAGAAACCATGGGAGGATATTTACTGCTCGTAAATGAAGCGATTTA
CAACGAAGCTTTAAGGTTGGGGGAGGGCATGGGGCTGGAAAAGGAATTGG
TAGAAAAAATGATACAGTGGAGTGTGGGTACTTGTTGGGCATCTGATAAT
CTGCAGAAGTTTGACGAGATCGCGTTTGAAAATGTCTTGGATAGCATGGC
CCAATACGTGTCCCTGAGCAAATTGAAGCTTCGAAACTATCCGGAGGTGG
AGAAAGTACTTCGTAGCAGAATTTCTGGACAATAA
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protein sequence of Gchil10141.t1

>Gchil10141.t1 ID=Gchil10141.t1|Name=Gchil10141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=445bp
MNIPLKKVAFIGTGNMGRPMIHKLLEAHFIVKVYDLHKPTATEVIQSGAV
WSETPRQCAEGADIVCTCLPLPEHVLENMTGPDGCLAGMRPCSVWVDCST
TDYHNTLYIADLAKKKRVYSVEAPVSNLSHMGVDFTNMSFFAAGDVEGYE
LLREFFAVTGKIDFYVGKIGMAQSAKLLTNDMFYTAVVAFGECTALIQEA
GIPLYWWWEFIKRSKGNSVASDQFSVFLFDGSWDDSCTLEIAIKDMSLTV
AMAKEIGEYLPVTEATNEAYLASSKVYDVYKGHVQVIRLTEDDNGIALRI
PNFSAPSKYGTNKDYKHPKGFISDKFGRIRPPLPESYKAPPFEPNDKQME
TAETMGGYLLLVNEAIYNEALRLGEGMGLEKELVEKMIQWSVGTCWASDN
LQKFDEIAFENVLDSMAQYVSLSKLKLRNYPEVEKVLRSRISGQ*
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mRNA from alignment at tig00004442_pilon:1256743..1258077-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10141.t1 ID=Gchil10141.t1|Name=Gchil10141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00004442_pilon:1256743..1258077- (Gracilaria chilensis NLEC103_M9 male)
ATGAACATTCCCTTAAAGAAAGTCGCATTTATTGGTACAGGAAATATGGG
CCGTCCTATGATCCACAAGCTACTTGAAGCTCATTTTATCGTGAAGGTTT
ACGATTTACATAAGCCCACTGCCACAGAGGTGATTCAATCTGGCGCTGTT
TGGAGCGAAACCCCACGCCAATGTGCAGAAGGTGCCGACATCGTGTGCAC
ATGTCTCCCTCTTCCAGAACATGTGCTTGAAAACATGACAGGTCCTGATG
GGTGCCTTGCAGGTATGCGACCTTGCTCGGTTTGGGTCGATTGTTCTACT
ACTGATTACCACAATACATTGTATATTGCGGACTTGGCGAAGAAGAAAAG
AGTGTATTCGGTTGAAGCTCCAGTAAGCAATCTTTCGCACATGGGAGTAG
ATTTTACAAACATGAGCTTTTTCGCTGCTGGTGACGTCGAAGGATACGAA
TTACTACGGGAATTCTTCGCAGTGACAGGAAAGATTGATTTCTATGTGGG
AAAGATCGGTATGGCGCAATCCGCCAAACTTCTCACAAATGACATGTTTT
ACACAGCTGTCGTGGCTTTTGGAGAGTGCACAGCCCTCATCCAGGAGGCA
GGCATCCCGTTATATTGGTGGTGGGAATTTATCAAGCGTAGTAAAGGGAA
CTCCGTGGCGTCGGACCAATTTTCTGTGTTCTTATTCGATGGGAGCTGGG
ACGATTCCTGCACGTTGGAAATAGCTATCAAGGACATGTCACTTACTGTT
GCCATGGCAAAAGAGATAGGTGAATACTTGCCTGTAACAGAAGCCACGAA
CGAAGCATACCTCGCTTCTTCCAAAGTTTACGATGTCTACAAGGGGCATG
TACAGGTCATTCGATTAACCGAAGATGATAACGGCATTGCGCTACGCATC
CCAAACTTTTCAGCACCTTCTAAGTATGGAACAAACAAAGATTACAAACA
CCCAAAAGGATTCATTTCCGACAAGTTTGGACGGATTCGCCCTCCGCTGC
CGGAGTCGTACAAAGCCCCACCGTTTGAGCCCAATGATAAACAAATGGAA
ACTGCAGAAACCATGGGAGGATATTTACTGCTCGTAAATGAAGCGATTTA
CAACGAAGCTTTAAGGTTGGGGGAGGGCATGGGGCTGGAAAAGGAATTGG
TAGAAAAAATGATACAGTGGAGTGTGGGTACTTGTTGGGCATCTGATAAT
CTGCAGAAGTTTGACGAGATCGCGTTTGAAAATGTCTTGGATAGCATGGC
CCAATACGTGTCCCTGAGCAAATTGAAGCTTCGAAACTATCCGGAGGTGG
AGAAAGTACTTCGTAGCAGAATTTCTGGACAATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1256743..1258077-

>Gchil10141.t1 ID=Gchil10141.t1|Name=Gchil10141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00004442_pilon:1256743..1258077- (Gracilaria chilensis NLEC103_M9 male)
ATGAACATTCCCTTAAAGAAAGTCGCATTTATTGGTACAGGAAATATGGG
CCGTCCTATGATCCACAAGCTACTTGAAGCTCATTTTATCGTGAAGGTTT
ACGATTTACATAAGCCCACTGCCACAGAGGTGATTCAATCTGGCGCTGTT
TGGAGCGAAACCCCACGCCAATGTGCAGAAGGTGCCGACATCGTGTGCAC
ATGTCTCCCTCTTCCAGAACATGTGCTTGAAAACATGACAGGTCCTGATG
GGTGCCTTGCAGGTATGCGACCTTGCTCGGTTTGGGTCGATTGTTCTACT
ACTGATTACCACAATACATTGTATATTGCGGACTTGGCGAAGAAGAAAAG
AGTGTATTCGGTTGAAGCTCCAGTAAGCAATCTTTCGCACATGGGAGTAG
ATTTTACAAACATGAGCTTTTTCGCTGCTGGTGACGTCGAAGGATACGAA
TTACTACGGGAATTCTTCGCAGTGACAGGAAAGATTGATTTCTATGTGGG
AAAGATCGGTATGGCGCAATCCGCCAAACTTCTCACAAATGACATGTTTT
ACACAGCTGTCGTGGCTTTTGGAGAGTGCACAGCCCTCATCCAGGAGGCA
GGCATCCCGTTATATTGGTGGTGGGAATTTATCAAGCGTAGTAAAGGGAA
CTCCGTGGCGTCGGACCAATTTTCTGTGTTCTTATTCGATGGGAGCTGGG
ACGATTCCTGCACGTTGGAAATAGCTATCAAGGACATGTCACTTACTGTT
GCCATGGCAAAAGAGATAGGTGAATACTTGCCTGTAACAGAAGCCACGAA
CGAAGCATACCTCGCTTCTTCCAAAGTTTACGATGTCTACAAGGGGCATG
TACAGGTCATTCGATTAACCGAAGATGATAACGGCATTGCGCTACGCATC
CCAAACTTTTCAGCACCTTCTAAGTATGGAACAAACAAAGATTACAAACA
CCCAAAAGGATTCATTTCCGACAAGTTTGGACGGATTCGCCCTCCGCTGC
CGGAGTCGTACAAAGCCCCACCGTTTGAGCCCAATGATAAACAAATGGAA
ACTGCAGAAACCATGGGAGGATATTTACTGCTCGTAAATGAAGCGATTTA
CAACGAAGCTTTAAGGTTGGGGGAGGGCATGGGGCTGGAAAAGGAATTGG
TAGAAAAAATGATACAGTGGAGTGTGGGTACTTGTTGGGCATCTGATAAT
CTGCAGAAGTTTGACGAGATCGCGTTTGAAAATGTCTTGGATAGCATGGC
CCAATACGTGTCCCTGAGCAAATTGAAGCTTCGAAACTATCCGGAGGTGG
AGAAAGTACTTCGTAGCAGAATTTCTGGACAATAA
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