Gchil10140.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10140.t1
Unique NameGchil10140.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1255356..1256462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog870187.Thini_4331
PFAMsMR_MLE_C,MR_MLE_N
Max annot lvl72273|Thiotrichales
KEGG rclassRC03309
KEGG koko:K19802
KEGG ReactionR10938
Evalue4.43e-140
EggNOG OGsCOG4948@1|root,COG4948@2|Bacteria,1MU8R@1224|Proteobacteria,1RNM4@1236|Gammaproteobacteria,463CS@72273|Thiotrichales
EC5.1.1.20
DescriptionMandelate racemase muconate lactonizing enzyme
COG categoryM
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10140Gchil10140Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1255356..1256462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10140.t1.stop1Gchil10140.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1255356..1255358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10140.t1.CDS1Gchil10140.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1255356..1256462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10140.t1.exon1Gchil10140.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1255356..1256462 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10140.t1.start1Gchil10140.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1256460..1256462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10140.t1Gchil10140.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1255356..1256462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10140.t1 ID=Gchil10140.t1|Name=Gchil10140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MKISKISVFQQDLPLTKPYYLSGGRLEFTGLDSTIVCIQSDSGLEGWGES
CPWGVSYLPAFAKGIRAGFDEICPVLLGENPLYLDKINHLMDVTLPGHEY
IKSALDMACWDILGKHARLPLFALLGGKFQESVMLQASISTATPQSMCEN
ISSYRNRGYKFFTCKIGGSDIDGDIERIRKISDNLQQGERITFDVNRAWL
PGEAIQVMNSVEDKRIYFEQPCETIDQMRHVRTLTSHPMIVDESVQSLED
LSVAYKYNLTQAIGLKIGRVGGLTKARRMRDFCVWHGIQLNIEDTGGSQI
SDTAAVHLAMATPLPYHRATWDCSQMHEVVTAEGGYTRRNGRATLSDGHG
LGVSVHTGTLGAPVKVYS*
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spliced messenger RNA

>Gchil10140.t1 ID=Gchil10140.t1|Name=Gchil10140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004442_pilon:1255356..1256462- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATCTCAAAAATTAGCGTCTTCCAGCAGGACTTACCACTCACAAA
GCCTTACTATCTCTCTGGCGGTCGCCTCGAATTCACCGGATTGGACTCAA
CAATCGTGTGTATTCAATCAGACTCCGGGCTTGAGGGATGGGGAGAAAGT
TGTCCATGGGGTGTATCCTATCTTCCTGCCTTTGCTAAGGGTATTCGTGC
CGGTTTCGATGAAATTTGTCCCGTCCTTCTTGGGGAAAATCCTCTTTACC
TTGATAAGATTAACCACCTGATGGATGTAACACTTCCCGGACATGAGTAC
ATCAAGTCTGCGTTGGATATGGCTTGCTGGGATATTCTTGGGAAGCATGC
ACGCTTGCCACTGTTCGCTCTACTTGGTGGAAAATTCCAAGAGTCTGTGA
TGCTTCAGGCAAGTATCTCTACAGCTACTCCCCAAAGTATGTGTGAAAAT
ATTAGTTCATATAGGAATCGAGGCTATAAGTTTTTCACCTGCAAAATCGG
GGGAAGTGACATTGACGGGGATATCGAGAGAATACGGAAAATATCAGATA
ATCTACAACAAGGAGAACGAATCACATTTGACGTTAACCGAGCCTGGCTG
CCGGGCGAGGCGATCCAAGTGATGAATTCCGTGGAAGACAAACGAATTTA
CTTCGAGCAACCCTGCGAGACAATTGATCAGATGCGTCATGTGCGGACGT
TAACGTCGCATCCGATGATCGTAGATGAGAGCGTCCAGAGTTTGGAAGAC
CTATCAGTGGCTTATAAATACAATCTGACGCAGGCCATAGGACTCAAGAT
AGGTCGGGTTGGTGGTCTGACAAAAGCGAGGAGGATGCGGGATTTTTGTG
TTTGGCATGGAATTCAGTTAAATATTGAGGACACTGGTGGTTCTCAAATT
TCGGACACGGCTGCCGTTCACTTGGCTATGGCAACCCCACTGCCGTATCA
TAGAGCTACGTGGGACTGCAGTCAGATGCATGAAGTAGTCACGGCCGAGG
GAGGATATACTCGTCGGAATGGACGAGCCACCTTGAGCGATGGGCATGGA
TTAGGGGTCAGTGTCCACACAGGTACATTGGGTGCACCCGTTAAGGTCTA
TAGTTAG
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protein sequence of Gchil10140.t1

>Gchil10140.t1 ID=Gchil10140.t1|Name=Gchil10140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MKISKISVFQQDLPLTKPYYLSGGRLEFTGLDSTIVCIQSDSGLEGWGES
CPWGVSYLPAFAKGIRAGFDEICPVLLGENPLYLDKINHLMDVTLPGHEY
IKSALDMACWDILGKHARLPLFALLGGKFQESVMLQASISTATPQSMCEN
ISSYRNRGYKFFTCKIGGSDIDGDIERIRKISDNLQQGERITFDVNRAWL
PGEAIQVMNSVEDKRIYFEQPCETIDQMRHVRTLTSHPMIVDESVQSLED
LSVAYKYNLTQAIGLKIGRVGGLTKARRMRDFCVWHGIQLNIEDTGGSQI
SDTAAVHLAMATPLPYHRATWDCSQMHEVVTAEGGYTRRNGRATLSDGHG
LGVSVHTGTLGAPVKVYS*
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mRNA from alignment at tig00004442_pilon:1255356..1256462-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10140.t1 ID=Gchil10140.t1|Name=Gchil10140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004442_pilon:1255356..1256462- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATCTCAAAAATTAGCGTCTTCCAGCAGGACTTACCACTCACAAA
GCCTTACTATCTCTCTGGCGGTCGCCTCGAATTCACCGGATTGGACTCAA
CAATCGTGTGTATTCAATCAGACTCCGGGCTTGAGGGATGGGGAGAAAGT
TGTCCATGGGGTGTATCCTATCTTCCTGCCTTTGCTAAGGGTATTCGTGC
CGGTTTCGATGAAATTTGTCCCGTCCTTCTTGGGGAAAATCCTCTTTACC
TTGATAAGATTAACCACCTGATGGATGTAACACTTCCCGGACATGAGTAC
ATCAAGTCTGCGTTGGATATGGCTTGCTGGGATATTCTTGGGAAGCATGC
ACGCTTGCCACTGTTCGCTCTACTTGGTGGAAAATTCCAAGAGTCTGTGA
TGCTTCAGGCAAGTATCTCTACAGCTACTCCCCAAAGTATGTGTGAAAAT
ATTAGTTCATATAGGAATCGAGGCTATAAGTTTTTCACCTGCAAAATCGG
GGGAAGTGACATTGACGGGGATATCGAGAGAATACGGAAAATATCAGATA
ATCTACAACAAGGAGAACGAATCACATTTGACGTTAACCGAGCCTGGCTG
CCGGGCGAGGCGATCCAAGTGATGAATTCCGTGGAAGACAAACGAATTTA
CTTCGAGCAACCCTGCGAGACAATTGATCAGATGCGTCATGTGCGGACGT
TAACGTCGCATCCGATGATCGTAGATGAGAGCGTCCAGAGTTTGGAAGAC
CTATCAGTGGCTTATAAATACAATCTGACGCAGGCCATAGGACTCAAGAT
AGGTCGGGTTGGTGGTCTGACAAAAGCGAGGAGGATGCGGGATTTTTGTG
TTTGGCATGGAATTCAGTTAAATATTGAGGACACTGGTGGTTCTCAAATT
TCGGACACGGCTGCCGTTCACTTGGCTATGGCAACCCCACTGCCGTATCA
TAGAGCTACGTGGGACTGCAGTCAGATGCATGAAGTAGTCACGGCCGAGG
GAGGATATACTCGTCGGAATGGACGAGCCACCTTGAGCGATGGGCATGGA
TTAGGGGTCAGTGTCCACACAGGTACATTGGGTGCACCCGTTAAGGTCTA
TAGTTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:1255356..1256462-

>Gchil10140.t1 ID=Gchil10140.t1|Name=Gchil10140.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00004442_pilon:1255356..1256462- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATCTCAAAAATTAGCGTCTTCCAGCAGGACTTACCACTCACAAA
GCCTTACTATCTCTCTGGCGGTCGCCTCGAATTCACCGGATTGGACTCAA
CAATCGTGTGTATTCAATCAGACTCCGGGCTTGAGGGATGGGGAGAAAGT
TGTCCATGGGGTGTATCCTATCTTCCTGCCTTTGCTAAGGGTATTCGTGC
CGGTTTCGATGAAATTTGTCCCGTCCTTCTTGGGGAAAATCCTCTTTACC
TTGATAAGATTAACCACCTGATGGATGTAACACTTCCCGGACATGAGTAC
ATCAAGTCTGCGTTGGATATGGCTTGCTGGGATATTCTTGGGAAGCATGC
ACGCTTGCCACTGTTCGCTCTACTTGGTGGAAAATTCCAAGAGTCTGTGA
TGCTTCAGGCAAGTATCTCTACAGCTACTCCCCAAAGTATGTGTGAAAAT
ATTAGTTCATATAGGAATCGAGGCTATAAGTTTTTCACCTGCAAAATCGG
GGGAAGTGACATTGACGGGGATATCGAGAGAATACGGAAAATATCAGATA
ATCTACAACAAGGAGAACGAATCACATTTGACGTTAACCGAGCCTGGCTG
CCGGGCGAGGCGATCCAAGTGATGAATTCCGTGGAAGACAAACGAATTTA
CTTCGAGCAACCCTGCGAGACAATTGATCAGATGCGTCATGTGCGGACGT
TAACGTCGCATCCGATGATCGTAGATGAGAGCGTCCAGAGTTTGGAAGAC
CTATCAGTGGCTTATAAATACAATCTGACGCAGGCCATAGGACTCAAGAT
AGGTCGGGTTGGTGGTCTGACAAAAGCGAGGAGGATGCGGGATTTTTGTG
TTTGGCATGGAATTCAGTTAAATATTGAGGACACTGGTGGTTCTCAAATT
TCGGACACGGCTGCCGTTCACTTGGCTATGGCAACCCCACTGCCGTATCA
TAGAGCTACGTGGGACTGCAGTCAGATGCATGAAGTAGTCACGGCCGAGG
GAGGATATACTCGTCGGAATGGACGAGCCACCTTGAGCGATGGGCATGGA
TTAGGGGTCAGTGTCCACACAGGTACATTGGGTGCACCCGTTAAGGTCTA
TAGTTAG
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