Gchil10139.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10139.t1
Unique NameGchil10139.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1254018..1254689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_13321T0
PFAMsLOR
Max annot lvl33154|Opisthokonta
Evalue2.79e-10
EggNOG OGs28N8X@1|root,2QUU9@2759|Eukaryota,3A41T@33154|Opisthokonta
DescriptionLURP-one-related
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10139Gchil10139Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1254018..1254689 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10139.t1.start1Gchil10139.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1254018..1254020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10139.t1.CDS1Gchil10139.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1254018..1254689 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10139.t1.exon1Gchil10139.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1254018..1254689 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10139.t1.stop1Gchil10139.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1254687..1254689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10139.t1Gchil10139.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1254018..1254689 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10139.t1 ID=Gchil10139.t1|Name=Gchil10139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=224bp
MDNDEELPIEPILKDGDVSRHSSSPVQPVQGAPQHADVVTPYTFNSVSKY
TVKELVFKPDCFEVLDDSKNGVYTIKGKAIDRSGTKTLFAKDSDDRLFKM
TENLNTFLQVMYMFDFRTKSVYTMRKKGVFPGFGRGTVFVWKGKGTDGSP
FIRMTTSGGRSMITIVDIETGKQIATMKRSMLGPRRFLTGADFYRVSISP
GFDVPFVLMLCVCADEQYTDFNR*
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spliced messenger RNA

>Gchil10139.t1 ID=Gchil10139.t1|Name=Gchil10139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00004442_pilon:1254018..1254689+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGATGAAGAGCTACCGATAGAGCCTATCTTAAAGGATGGCGA
CGTCAGCCGCCATTCCTCGTCCCCGGTACAGCCTGTTCAGGGTGCACCCC
AGCACGCTGATGTCGTTACGCCTTACACCTTCAATTCTGTTTCAAAGTAT
ACCGTTAAGGAACTCGTCTTCAAACCGGATTGTTTTGAGGTGCTTGACGA
CTCTAAAAATGGTGTCTACACCATCAAGGGAAAAGCTATCGACCGCAGCG
GCACCAAAACATTGTTCGCCAAAGATTCAGATGATCGTCTATTCAAAATG
ACTGAAAACCTCAACACCTTTCTTCAGGTCATGTACATGTTTGACTTTCG
CACAAAGTCGGTGTACACGATGAGGAAGAAAGGGGTTTTCCCCGGCTTCG
GACGCGGCACTGTATTTGTATGGAAAGGAAAGGGAACAGATGGTTCGCCT
TTCATTCGCATGACCACGAGTGGCGGGCGTTCCATGATTACTATTGTTGA
TATCGAGACGGGAAAGCAAATCGCCACTATGAAACGTAGTATGCTCGGTC
CGAGACGTTTCTTAACTGGGGCTGATTTTTACCGCGTGTCAATTAGTCCT
GGCTTTGATGTTCCTTTTGTACTGATGCTTTGTGTGTGTGCTGATGAACA
ATACACCGATTTCAACCGATGA
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protein sequence of Gchil10139.t1

>Gchil10139.t1 ID=Gchil10139.t1|Name=Gchil10139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=224bp
MDNDEELPIEPILKDGDVSRHSSSPVQPVQGAPQHADVVTPYTFNSVSKY
TVKELVFKPDCFEVLDDSKNGVYTIKGKAIDRSGTKTLFAKDSDDRLFKM
TENLNTFLQVMYMFDFRTKSVYTMRKKGVFPGFGRGTVFVWKGKGTDGSP
FIRMTTSGGRSMITIVDIETGKQIATMKRSMLGPRRFLTGADFYRVSISP
GFDVPFVLMLCVCADEQYTDFNR*
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mRNA from alignment at tig00004442_pilon:1254018..1254689+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10139.t1 ID=Gchil10139.t1|Name=Gchil10139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00004442_pilon:1254018..1254689+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACAACGATGAAGAGCTACCGATAGAGCCTATCTTAAAGGATGGCGA
CGTCAGCCGCCATTCCTCGTCCCCGGTACAGCCTGTTCAGGGTGCACCCC
AGCACGCTGATGTCGTTACGCCTTACACCTTCAATTCTGTTTCAAAGTAT
ACCGTTAAGGAACTCGTCTTCAAACCGGATTGTTTTGAGGTGCTTGACGA
CTCTAAAAATGGTGTCTACACCATCAAGGGAAAAGCTATCGACCGCAGCG
GCACCAAAACATTGTTCGCCAAAGATTCAGATGATCGTCTATTCAAAATG
ACTGAAAACCTCAACACCTTTCTTCAGGTCATGTACATGTTTGACTTTCG
CACAAAGTCGGTGTACACGATGAGGAAGAAAGGGGTTTTCCCCGGCTTCG
GACGCGGCACTGTATTTGTATGGAAAGGAAAGGGAACAGATGGTTCGCCT
TTCATTCGCATGACCACGAGTGGCGGGCGTTCCATGATTACTATTGTTGA
TATCGAGACGGGAAAGCAAATCGCCACTATGAAACGTAGTATGCTCGGTC
CGAGACGTTTCTTAACTGGGGCTGATTTTTACCGCGTGTCAATTAGTCCT
GGCTTTGATGTTCCTTTTGTACTGATGCTTTGTGTGTGTGCTGATGAACA
ATACACCGATTTCAACCGATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1254018..1254689+

>Gchil10139.t1 ID=Gchil10139.t1|Name=Gchil10139.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00004442_pilon:1254018..1254689+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACAACGATGAAGAGCTACCGATAGAGCCTATCTTAAAGGATGGCGA
CGTCAGCCGCCATTCCTCGTCCCCGGTACAGCCTGTTCAGGGTGCACCCC
AGCACGCTGATGTCGTTACGCCTTACACCTTCAATTCTGTTTCAAAGTAT
ACCGTTAAGGAACTCGTCTTCAAACCGGATTGTTTTGAGGTGCTTGACGA
CTCTAAAAATGGTGTCTACACCATCAAGGGAAAAGCTATCGACCGCAGCG
GCACCAAAACATTGTTCGCCAAAGATTCAGATGATCGTCTATTCAAAATG
ACTGAAAACCTCAACACCTTTCTTCAGGTCATGTACATGTTTGACTTTCG
CACAAAGTCGGTGTACACGATGAGGAAGAAAGGGGTTTTCCCCGGCTTCG
GACGCGGCACTGTATTTGTATGGAAAGGAAAGGGAACAGATGGTTCGCCT
TTCATTCGCATGACCACGAGTGGCGGGCGTTCCATGATTACTATTGTTGA
TATCGAGACGGGAAAGCAAATCGCCACTATGAAACGTAGTATGCTCGGTC
CGAGACGTTTCTTAACTGGGGCTGATTTTTACCGCGTGTCAATTAGTCCT
GGCTTTGATGTTCCTTTTGTACTGATGCTTTGTGTGTGTGCTGATGAACA
ATACACCGATTTCAACCGATGA
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