Gchil10137.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10137.t1
Unique NameGchil10137.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1248839..1250938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313628.LNTAR_09304
Preferred namequeH
PFAMsDUF208
Max annot lvl2|Bacteria
KEGG koko:K03470,ko:K09765
KEGG Pathwayko03030,map03030
Evalue1.7e-07
EggNOG OGsCOG1636@1|root,COG1636@2|Bacteria
EC1.17.99.6,3.1.26.4
Descriptionqueuosine biosynthetic process
COG categoryC
BRITEko00000,ko00001,ko01000,ko03016,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10137Gchil10137Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1248839..1250938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10137.t1Gchil10137.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1248839..1250938 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10137.t1.stop1Gchil10137.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1248839..1248841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10137.t1.CDS1Gchil10137.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1248839..1249254 -
Gchil10137.t1.CDS2Gchil10137.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1250011..1250938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10137.t1.exon1Gchil10137.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1248839..1249254 -
Gchil10137.t1.exon2Gchil10137.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1250011..1250938 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10137.t1.intron1Gchil10137.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1249255..1250010 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10137.t1.start1Gchil10137.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1250936..1250938 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10137.t1 ID=Gchil10137.t1|Name=Gchil10137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MTEADAHSLFLCAFWAQVAEKVPSHKHFLNATIMDTCIHATVAWAKVLMA
HRTYHCSPSCSTTQHDVEKSYLWNPDLIWEVSNDWYTAGSTLALAYDVLH
DRLSESQRRVVRSALALLVMKRWTWGVVDQNTAKYPDAETHPHRIVSNWG
MYHSNLYITNLAIEGESGFVPYAQHVLSENDSVGFNHKMNRKFEALINAY
MTHSVYPDGSTFEDGYTYHTAFREGSLAFLAAHRRGHNLLNTPRFRNIIH
NVAQMFEPWQCAPLLGHSSGGGQGYPAYVGLLRYTYPDGSLPRMLWAQRF
GKNFTNDGNYIGYGVLVDSVSAGPGTHTFESYLILDDEVKVERKISQCNG
NQCKIVLASANGQVLDVHVLALGNEVSFRVEEFNGHKRIVVRSLRETSEE
IWIVFFPRSRDPNDFSMVREGDNVKLSTWEGSNTFQVRKSDHTVIER*
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spliced messenger RNA

>Gchil10137.t1 ID=Gchil10137.t1|Name=Gchil10137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004442_pilon:1248839..1250938- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGGCCGACGCTCACTCGCTCTTCCTCTGTGCATTCTGGGCTCA
GGTTGCAGAGAAAGTTCCATCGCATAAGCATTTTCTTAACGCTACAATTA
TGGATACTTGTATTCATGCTACTGTAGCTTGGGCCAAGGTTCTCATGGCG
CACCGTACGTACCATTGCAGCCCTTCTTGTTCCACCACTCAGCATGACGT
AGAAAAGTCCTATCTCTGGAACCCAGATTTGATCTGGGAAGTTAGCAACG
ACTGGTACACTGCAGGTTCCACTCTCGCTCTTGCTTATGATGTTTTGCAC
GATAGATTGTCTGAAAGTCAACGCCGAGTAGTGCGTTCCGCTCTTGCTCT
TCTTGTAATGAAACGATGGACCTGGGGCGTGGTAGATCAAAACACTGCCA
AGTATCCAGATGCAGAAACGCATCCGCATCGAATCGTAAGTAATTGGGGA
ATGTATCATTCCAACTTGTACATCACAAACCTTGCAATTGAAGGTGAATC
TGGATTTGTGCCATACGCACAACATGTACTGTCTGAAAATGATTCGGTAG
GCTTTAATCATAAGATGAATCGCAAGTTTGAAGCTCTGATCAATGCGTAC
ATGACTCACTCGGTGTATCCAGATGGCTCAACTTTTGAAGACGGATACAC
ATACCACACAGCGTTTAGAGAGGGTTCTCTTGCATTTCTGGCGGCTCACA
GAAGAGGCCACAACCTTTTGAATACCCCGCGATTCAGAAACATCATACAC
AATGTGGCGCAGATGTTTGAGCCCTGGCAGTGCGCTCCTCTTCTTGGTCA
TTCCAGCGGAGGTGGACAAGGCTATCCTGCATACGTGGGACTGCTACGCT
ATACGTATCCTGACGGCAGCCTACCTCGCATGCTCTGGGCTCAGCGCTTC
GGGAAGAACTTTACAAACGATGGAAACTATATTGGATACGGAGTACTAGT
CGACAGTGTGTCGGCAGGACCGGGTACACATACTTTTGAGTCCTATTTGA
TACTAGACGATGAGGTGAAGGTTGAGAGAAAGATATCTCAATGCAATGGA
AATCAGTGTAAGATTGTTCTCGCTTCTGCCAATGGACAAGTGCTTGATGT
GCATGTTTTGGCTCTTGGAAACGAAGTGAGCTTTCGAGTCGAGGAGTTTA
ATGGACATAAAAGGATTGTGGTCAGAAGCCTGCGGGAAACGTCTGAAGAA
ATATGGATCGTCTTTTTTCCTCGATCAAGAGATCCAAACGATTTCAGCAT
GGTCCGCGAAGGAGACAATGTCAAACTTTCTACTTGGGAGGGAAGCAACA
CTTTCCAAGTGAGGAAGTCGGATCACACAGTCATTGAAAGATGA
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protein sequence of Gchil10137.t1

>Gchil10137.t1 ID=Gchil10137.t1|Name=Gchil10137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MTEADAHSLFLCAFWAQVAEKVPSHKHFLNATIMDTCIHATVAWAKVLMA
HRTYHCSPSCSTTQHDVEKSYLWNPDLIWEVSNDWYTAGSTLALAYDVLH
DRLSESQRRVVRSALALLVMKRWTWGVVDQNTAKYPDAETHPHRIVSNWG
MYHSNLYITNLAIEGESGFVPYAQHVLSENDSVGFNHKMNRKFEALINAY
MTHSVYPDGSTFEDGYTYHTAFREGSLAFLAAHRRGHNLLNTPRFRNIIH
NVAQMFEPWQCAPLLGHSSGGGQGYPAYVGLLRYTYPDGSLPRMLWAQRF
GKNFTNDGNYIGYGVLVDSVSAGPGTHTFESYLILDDEVKVERKISQCNG
NQCKIVLASANGQVLDVHVLALGNEVSFRVEEFNGHKRIVVRSLRETSEE
IWIVFFPRSRDPNDFSMVREGDNVKLSTWEGSNTFQVRKSDHTVIER*
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mRNA from alignment at tig00004442_pilon:1248839..1250938-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10137.t1 ID=Gchil10137.t1|Name=Gchil10137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00004442_pilon:1248839..1250938- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAGGCCGACGCTCACTCGCTCTTCCTCTGTGCATTCTGGGCTCA
GGTTGCAGAGAAAGTTCCATCGCATAAGCATTTTCTTAACGCTACAATTA
TGGATACTTGTATTCATGCTACTGTAGCTTGGGCCAAGGTTCTCATGGCG
CACCGTACGTACCATTGCAGCCCTTCTTGTTCCACCACTCAGCATGACGT
AGAAAAGTCCTATCTCTGGAACCCAGATTTGATCTGGGAAGTTAGCAACG
ACTGGTACACTGCAGGTTCCACTCTCGCTCTTGCTTATGATGTTTTGCAC
GATAGATTGTCTGAAAGTCAACGCCGAGTAGTGCGTTCCGCTCTTGCTCT
TCTTGTAATGAAACGATGGACCTGGGGCGTGGTAGATCAAAACACTGCCA
AGTATCCAGATGCAGAAACGCATCCGCATCGAATCGTAAGTAATTGGGGA
ATGTATCATTCCAACTTGTACATCACAAACCTTGCAATTGAAGGTGAATC
TGGATTTGTGCCATACGCACAACATGTACTGTCTGAAAATGATTCGGTAG
GCTTTAATCATAAGATGAATCGCAAGTTTGAAGCTCTGATCAATGCGTAC
ATGACTCACTCGGTGTATCCAGATGGCTCAACTTTTGAAGACGGATACAC
ATACCACACAGCGTTTAGAGAGGGTTCTCTTGCATTTCTGGCGGCTCACA
GAAGAGGCCACAACCTTTTGAATACCCCGCGATTCAGAAACATCATACAC
AATGTGGCGCAGATGTTTGAGCCCTGGCAGTGCGCTCCTCTTCTTGGTCA
TTCCAGCGGAGGTGGACAAGGCTATCCTGCATACGTGGGACTGCTACGCT
ATACGTATCCTGACGGCAGCCTACCTCGCATGCTCTGGGCTCAGCGCTTC
GGGAAGAACTTTACAAACGATGGAAACTGTCGCATTTGGTGGACCCAAAC
AATGACGCAATTGGTTATTTTTGGCGATGAACACAAGCAAGACCTCTCGC
TTGTGGCAGATGCTCCTGAATCCTTGTCGGAAGACGCAAAGAAACACTTT
CCATTGGCATATGTATCGACTAGGAGAGGCCTTATAATCGTACGATCAAC
TTACTCTCAGATGTCATCTTATATGCATTTCGATGCACGACCGGATTCGT
TCTACCTCGGACATGATAATGCTGACAGAGGTATAATCACATTCTCTGCC
ATGAAACAAAGATGGATCGATGACCTGCCTTGGAAGGAAAATATTGATTC
CCGAAAGCACAGTCTCTTGCACATCGATGGTCTCGCACAAGCTGTCAAAG
CTCCTTCTGTAACAATCCTCAAGGTTGTGGATTCGCCGTCCGCTTCTATT
GCTTCAGCTGATCTAACATACACATATAATATCCAGTGGGCTCAGGCGTG
GCAAGGACCGAGCATTGGTACTGCTGACGTTTTAGAGTACAGACCTGACG
GCTCTACCTACGAGAAGAAATACTCATTTCCTGATGCAGAGGAAAATAAC
CCATGGAATTTGGGATGGCCCATGGAAGATGATGCTTCCGAAATTGGATT
TAGCCGGAACATGACTATGAACGGGAATCCCGATTTGGCGGCATTTGGCA
TGAATGAATGGAGGAGACACTATCGCGAACAACACGTTGAACACCTAATT
CGTTCAGTGATCACTGTTAAATCACGTAATGAAGATATTGGATACGGAGT
ACTAGTCGACAGTGTGTCGGCAGGACCGGGTACACATACTTTTGAGTCCT
ATTTGATACTAGACGATGAGGTGAAGGTTGAGAGAAAGATATCTCAATGC
AATGGAAATCAGTGTAAGATTGTTCTCGCTTCTGCCAATGGACAAGTGCT
TGATGTGCATGTTTTGGCTCTTGGAAACGAAGTGAGCTTTCGAGTCGAGG
AGTTTAATGGACATAAAAGGATTGTGGTCAGAAGCCTGCGGGAAACGTCT
GAAGAAATATGGATCGTCTTTTTTCCTCGATCAAGAGATCCAAACGATTT
CAGCATGGTCCGCGAAGGAGACAATGTCAAACTTTCTACTTGGGAGGGAA
GCAACACTTTCCAAGTGAGGAAGTCGGATCACACAGTCATTGAAAGATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1248839..1250938-

>Gchil10137.t1 ID=Gchil10137.t1|Name=Gchil10137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00004442_pilon:1248839..1250938- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAGGCCGACGCTCACTCGCTCTTCCTCTGTGCATTCTGGGCTCA
GGTTGCAGAGAAAGTTCCATCGCATAAGCATTTTCTTAACGCTACAATTA
TGGATACTTGTATTCATGCTACTGTAGCTTGGGCCAAGGTTCTCATGGCG
CACCGTACGTACCATTGCAGCCCTTCTTGTTCCACCACTCAGCATGACGT
AGAAAAGTCCTATCTCTGGAACCCAGATTTGATCTGGGAAGTTAGCAACG
ACTGGTACACTGCAGGTTCCACTCTCGCTCTTGCTTATGATGTTTTGCAC
GATAGATTGTCTGAAAGTCAACGCCGAGTAGTGCGTTCCGCTCTTGCTCT
TCTTGTAATGAAACGATGGACCTGGGGCGTGGTAGATCAAAACACTGCCA
AGTATCCAGATGCAGAAACGCATCCGCATCGAATCGTAAGTAATTGGGGA
ATGTATCATTCCAACTTGTACATCACAAACCTTGCAATTGAAGGTGAATC
TGGATTTGTGCCATACGCACAACATGTACTGTCTGAAAATGATTCGGTAG
GCTTTAATCATAAGATGAATCGCAAGTTTGAAGCTCTGATCAATGCGTAC
ATGACTCACTCGGTGTATCCAGATGGCTCAACTTTTGAAGACGGATACAC
ATACCACACAGCGTTTAGAGAGGGTTCTCTTGCATTTCTGGCGGCTCACA
GAAGAGGCCACAACCTTTTGAATACCCCGCGATTCAGAAACATCATACAC
AATGTGGCGCAGATGTTTGAGCCCTGGCAGTGCGCTCCTCTTCTTGGTCA
TTCCAGCGGAGGTGGACAAGGCTATCCTGCATACGTGGGACTGCTACGCT
ATACGTATCCTGACGGCAGCCTACCTCGCATGCTCTGGGCTCAGCGCTTC
GGGAAGAACTTTACAAACGATGGAAACTATATTGGATACGGAGTACTAGT
CGACAGTGTGTCGGCAGGACCGGGTACACATACTTTTGAGTCCTATTTGA
TACTAGACGATGAGGTGAAGGTTGAGAGAAAGATATCTCAATGCAATGGA
AATCAGTGTAAGATTGTTCTCGCTTCTGCCAATGGACAAGTGCTTGATGT
GCATGTTTTGGCTCTTGGAAACGAAGTGAGCTTTCGAGTCGAGGAGTTTA
ATGGACATAAAAGGATTGTGGTCAGAAGCCTGCGGGAAACGTCTGAAGAA
ATATGGATCGTCTTTTTTCCTCGATCAAGAGATCCAAACGATTTCAGCAT
GGTCCGCGAAGGAGACAATGTCAAACTTTCTACTTGGGAGGGAAGCAACA
CTTTCCAAGTGAGGAAGTCGGATCACACAGTCATTGAAAGATGA
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