Gchil10135.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10135.t1
Unique Name	Gchil10135.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	612

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1214325..1216252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3750.XP_008338906.1
PFAMs	DUF563
Max annot lvl	35493\|Streptophyta
Evalue	1.25e-05
EggNOG OGs	28M8Q@1\|root,2QTRX@2759\|Eukaryota,37HUM@33090\|Viridiplantae,3GC8S@35493\|Streptophyta,4JRT4@91835\|fabids
Description	Protein of unknown function (DUF563)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10135	Gchil10135	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1214325..1216252 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10135.t1	Gchil10135.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1214325..1216252 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10135.t1.start1	Gchil10135.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1214325..1214327 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10135.t1.CDS1	Gchil10135.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1214325..1215862 +
Gchil10135.t1.CDS2	Gchil10135.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1215955..1216252 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10135.t1.exon1	Gchil10135.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1214325..1215862 +
Gchil10135.t1.exon2	Gchil10135.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1215955..1216252 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10135.t1.intron1	Gchil10135.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004442_pilon 1215863..1215954 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10135.t1.stop1	Gchil10135.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1216250..1216252 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1214325..1216252+
coding sequence from alignment at tig00004442_pilon:1214325..1216252+

mRNA sequence

>Gchil10135.t1 ID=Gchil10135.t1|Name=Gchil10135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=612bp
MPFHTKLFARRSRFFIFSVCGLIVVLASSLFYISSTLSALQLRLHSHICR
HNDPDDPLCTSHTFPVSAFSVKNPVDHLLADHDPVSHLEAHREETRRAMR
HPLLWLEHLKKHHHQAVVQTARTACREFDAGAQTCVFQGMACVNVSSELP
FGRPLIYFVDDLATDHETVPNDRWCSLRHLSSDPRYFSSRHWPILNDTVA
PQRSCLDARFRTSQSLFTSRFDSYTTSQQLPDLHQMRIKWLPSIWLSDLD
YVDNNHNNHLVKDIIWMLDLSLWQQSLHLTSSPADSFPSDVTDPIFESTP
PHMYMPQGERDFERQTSRDVNRLNYALILQRNISNLYPNFTQHEMKQTTE
EMRKTQPLFDAYPDLLKDEKFVFHRDELNASTHDLVCTPRLTVGAKIGNG
AHERVCRSLRQRAHEFYGIKQNEKKRLGHIHYAQPPKRIVILQRHVTRRI
GNLEQLHDSLKQAFEDKGVEIEVVTTKELVTAEQYVRVFSRAGVLLTPHG
SQSMGQLYMPRHSSLIEIMPVGYTDYAFNLLSESCKIWYYELQSMRHPNK
SKEWYEEKCGKLVPHMMNPCTAVKAVDVWVNISSAVRTIKFAMERMGYPM
DAWMEYVQSGG*

spliced messenger RNA

>Gchil10135.t1 ID=Gchil10135.t1|Name=Gchil10135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00004442_pilon:1214325..1216252+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTCCACACTAAGCTTTTCGCTCGTCGCTCTCGTTTCTTCATCTT
TTCTGTGTGCGGGCTCATTGTCGTATTGGCCTCTTCTCTGTTCTACATCA
GCTCCACTCTCAGCGCTCTGCAACTGCGGCTTCACTCCCACATCTGCCGG
CACAACGACCCGGATGACCCGCTGTGCACCTCCCACACGTTCCCAGTGTC
CGCTTTTTCCGTCAAAAACCCAGTCGACCACTTGCTCGCCGATCATGACC
CTGTCAGCCATCTTGAAGCGCACCGCGAGGAAACGCGGAGAGCGATGCGA
CATCCGTTGTTGTGGCTTGAGCATTTAAAGAAGCACCACCACCAAGCTGT
GGTTCAGACGGCACGAACGGCCTGTCGCGAGTTCGATGCAGGAGCGCAGA
CGTGCGTGTTTCAGGGCATGGCTTGCGTTAATGTCTCGTCGGAGCTGCCG
TTTGGAAGACCTTTGATTTACTTTGTGGATGATTTGGCCACGGACCATGA
GACTGTCCCGAACGATAGATGGTGTTCTTTAAGGCATCTTTCATCCGACC
CGCGCTACTTCTCGTCCAGGCATTGGCCTATTCTCAATGATACTGTCGCA
CCACAACGCTCTTGTCTGGATGCTCGCTTTCGAACATCCCAATCTTTGTT
TACCTCTCGTTTTGACTCTTACACTACTTCTCAACAACTTCCAGATTTAC
ACCAAATGAGAATTAAATGGCTTCCCTCAATATGGTTATCTGATCTGGAC
TATGTTGATAACAATCACAACAACCATCTTGTGAAGGATATTATTTGGAT
GCTCGATCTTTCCCTATGGCAGCAGTCCTTACACCTCACTTCTTCTCCCG
CTGATAGTTTTCCTTCAGACGTGACTGATCCCATATTTGAATCTACTCCG
CCCCATATGTACATGCCACAAGGGGAACGTGACTTTGAACGCCAAACTTC
TCGCGATGTCAATCGTCTAAACTACGCACTCATACTTCAGAGAAATATAT
CAAATCTGTATCCAAACTTCACGCAGCACGAAATGAAACAAACTACTGAG
GAGATGCGGAAAACACAGCCGCTGTTTGATGCCTATCCAGATCTGTTGAA
AGATGAAAAGTTTGTCTTTCACCGCGATGAACTGAATGCTTCCACACACG
ACTTGGTGTGCACGCCTCGTCTCACCGTTGGCGCAAAGATTGGAAATGGG
GCGCACGAAAGAGTTTGTCGCTCTCTAAGACAAAGAGCGCATGAGTTTTA
TGGCATTAAACAGAATGAAAAGAAGAGATTAGGGCATATTCACTATGCTC
AACCTCCCAAACGAATTGTGATTCTGCAGCGGCATGTCACGAGACGGATT
GGGAACCTGGAACAGCTGCACGACAGTCTCAAACAGGCGTTTGAGGACAA
GGGTGTGGAGATAGAGGTGGTGACTACCAAGGAGCTGGTAACAGCTGAGC
AATATGTGCGGGTGTTTTCCAGAGCGGGGGTCCTGCTGACACCGCATGGC
TCACAGTCCATGGGCCAACTATACATGCCACGACACAGTTCATTGATCGA
GATCATGCCCGTGGGCTACACGGACTATGCATTCAACCTGTTGTCAGAGT
CGTGCAAGATATGGTATTACGAATTGCAAAGCATGAGACATCCAAACAAG
AGCAAGGAGTGGTATGAAGAAAAGTGCGGGAAGCTGGTGCCACACATGAT
GAACCCATGTACGGCCGTGAAGGCGGTGGACGTGTGGGTTAATATTAGCA
GCGCGGTGCGGACGATCAAGTTTGCGATGGAACGAATGGGATATCCGATG
GATGCGTGGATGGAGTATGTACAGAGCGGCGGTTGA

protein sequence of Gchil10135.t1

>Gchil10135.t1 ID=Gchil10135.t1|Name=Gchil10135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=612bp
MPFHTKLFARRSRFFIFSVCGLIVVLASSLFYISSTLSALQLRLHSHICR
HNDPDDPLCTSHTFPVSAFSVKNPVDHLLADHDPVSHLEAHREETRRAMR
HPLLWLEHLKKHHHQAVVQTARTACREFDAGAQTCVFQGMACVNVSSELP
FGRPLIYFVDDLATDHETVPNDRWCSLRHLSSDPRYFSSRHWPILNDTVA
PQRSCLDARFRTSQSLFTSRFDSYTTSQQLPDLHQMRIKWLPSIWLSDLD
YVDNNHNNHLVKDIIWMLDLSLWQQSLHLTSSPADSFPSDVTDPIFESTP
PHMYMPQGERDFERQTSRDVNRLNYALILQRNISNLYPNFTQHEMKQTTE
EMRKTQPLFDAYPDLLKDEKFVFHRDELNASTHDLVCTPRLTVGAKIGNG
AHERVCRSLRQRAHEFYGIKQNEKKRLGHIHYAQPPKRIVILQRHVTRRI
GNLEQLHDSLKQAFEDKGVEIEVVTTKELVTAEQYVRVFSRAGVLLTPHG
SQSMGQLYMPRHSSLIEIMPVGYTDYAFNLLSESCKIWYYELQSMRHPNK
SKEWYEEKCGKLVPHMMNPCTAVKAVDVWVNISSAVRTIKFAMERMGYPM
DAWMEYVQSGG*

mRNA from alignment at tig00004442_pilon:1214325..1216252+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10135.t1 ID=Gchil10135.t1|Name=Gchil10135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1928bp|location=Sequence derived from alignment at tig00004442_pilon:1214325..1216252+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCTTCCACACTAAGCTTTTCGCTCGTCGCTCTCGTTTCTTCATCTT
TTCTGTGTGCGGGCTCATTGTCGTATTGGCCTCTTCTCTGTTCTACATCA
GCTCCACTCTCAGCGCTCTGCAACTGCGGCTTCACTCCCACATCTGCCGG
CACAACGACCCGGATGACCCGCTGTGCACCTCCCACACGTTCCCAGTGTC
CGCTTTTTCCGTCAAAAACCCAGTCGACCACTTGCTCGCCGATCATGACC
CTGTCAGCCATCTTGAAGCGCACCGCGAGGAAACGCGGAGAGCGATGCGA
CATCCGTTGTTGTGGCTTGAGCATTTAAAGAAGCACCACCACCAAGCTGT
GGTTCAGACGGCACGAACGGCCTGTCGCGAGTTCGATGCAGGAGCGCAGA
CGTGCGTGTTTCAGGGCATGGCTTGCGTTAATGTCTCGTCGGAGCTGCCG
TTTGGAAGACCTTTGATTTACTTTGTGGATGATTTGGCCACGGACCATGA
GACTGTCCCGAACGATAGATGGTGTTCTTTAAGGCATCTTTCATCCGACC
CGCGCTACTTCTCGTCCAGGCATTGGCCTATTCTCAATGATACTGTCGCA
CCACAACGCTCTTGTCTGGATGCTCGCTTTCGAACATCCCAATCTTTGTT
TACCTCTCGTTTTGACTCTTACACTACTTCTCAACAACTTCCAGATTTAC
ACCAAATGAGAATTAAATGGCTTCCCTCAATATGGTTATCTGATCTGGAC
TATGTTGATAACAATCACAACAACCATCTTGTGAAGGATATTATTTGGAT
GCTCGATCTTTCCCTATGGCAGCAGTCCTTACACCTCACTTCTTCTCCCG
CTGATAGTTTTCCTTCAGACGTGACTGATCCCATATTTGAATCTACTCCG
CCCCATATGTACATGCCACAAGGGGAACGTGACTTTGAACGCCAAACTTC
TCGCGATGTCAATCGTCTAAACTACGCACTCATACTTCAGAGAAATATAT
CAAATCTGTATCCAAACTTCACGCAGCACGAAATGAAACAAACTACTGAG
GAGATGCGGAAAACACAGCCGCTGTTTGATGCCTATCCAGATCTGTTGAA
AGATGAAAAGTTTGTCTTTCACCGCGATGAACTGAATGCTTCCACACACG
ACTTGGTGTGCACGCCTCGTCTCACCGTTGGCGCAAAGATTGGAAATGGG
GCGCACGAAAGAGTTTGTCGCTCTCTAAGACAAAGAGCGCATGAGTTTTA
TGGCATTAAACAGAATGAAAAGAAGAGATTAGGGCATATTCACTATGCTC
AACCTCCCAAACGAATTGTGATTCTGCAGCGGCATGTCACGAGACGGATT
GGGAACCTGGAACAGCTGCACGACAGTCTCAAACAGGCGTTTGAGGACAA
GGGTGTGGAGATAGAGGTGGTGACTACCAAGGAGCTGGTAACAGCTGAGC
AATATGTGCGGGTGTTTTCCAGAGCGGGGGTCCTGCTGACACCGCATGGC
TCACAGTCCATGGGCCAACTATACATGCCACGACACAGGTAAGCTGCGCT
TGGAGCTGTGCTTTGAGCTGGTACCATAGGTTTTGTTGTTGTTCTGACAG
TTTTGTATGTTTTTTCTTAATGCGTGGCAGTTCATTGATCGAGATCATGC
CCGTGGGCTACACGGACTATGCATTCAACCTGTTGTCAGAGTCGTGCAAG
ATATGGTATTACGAATTGCAAAGCATGAGACATCCAAACAAGAGCAAGGA
GTGGTATGAAGAAAAGTGCGGGAAGCTGGTGCCACACATGATGAACCCAT
GTACGGCCGTGAAGGCGGTGGACGTGTGGGTTAATATTAGCAGCGCGGTG
CGGACGATCAAGTTTGCGATGGAACGAATGGGATATCCGATGGATGCGTG
GATGGAGTATGTACAGAGCGGCGGTTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:1214325..1216252+

>Gchil10135.t1 ID=Gchil10135.t1|Name=Gchil10135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1836bp|location=Sequence derived from alignment at tig00004442_pilon:1214325..1216252+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCTTCCACACTAAGCTTTTCGCTCGTCGCTCTCGTTTCTTCATCTT
TTCTGTGTGCGGGCTCATTGTCGTATTGGCCTCTTCTCTGTTCTACATCA
GCTCCACTCTCAGCGCTCTGCAACTGCGGCTTCACTCCCACATCTGCCGG
CACAACGACCCGGATGACCCGCTGTGCACCTCCCACACGTTCCCAGTGTC
CGCTTTTTCCGTCAAAAACCCAGTCGACCACTTGCTCGCCGATCATGACC
CTGTCAGCCATCTTGAAGCGCACCGCGAGGAAACGCGGAGAGCGATGCGA
CATCCGTTGTTGTGGCTTGAGCATTTAAAGAAGCACCACCACCAAGCTGT
GGTTCAGACGGCACGAACGGCCTGTCGCGAGTTCGATGCAGGAGCGCAGA
CGTGCGTGTTTCAGGGCATGGCTTGCGTTAATGTCTCGTCGGAGCTGCCG
TTTGGAAGACCTTTGATTTACTTTGTGGATGATTTGGCCACGGACCATGA
GACTGTCCCGAACGATAGATGGTGTTCTTTAAGGCATCTTTCATCCGACC
CGCGCTACTTCTCGTCCAGGCATTGGCCTATTCTCAATGATACTGTCGCA
CCACAACGCTCTTGTCTGGATGCTCGCTTTCGAACATCCCAATCTTTGTT
TACCTCTCGTTTTGACTCTTACACTACTTCTCAACAACTTCCAGATTTAC
ACCAAATGAGAATTAAATGGCTTCCCTCAATATGGTTATCTGATCTGGAC
TATGTTGATAACAATCACAACAACCATCTTGTGAAGGATATTATTTGGAT
GCTCGATCTTTCCCTATGGCAGCAGTCCTTACACCTCACTTCTTCTCCCG
CTGATAGTTTTCCTTCAGACGTGACTGATCCCATATTTGAATCTACTCCG
CCCCATATGTACATGCCACAAGGGGAACGTGACTTTGAACGCCAAACTTC
TCGCGATGTCAATCGTCTAAACTACGCACTCATACTTCAGAGAAATATAT
CAAATCTGTATCCAAACTTCACGCAGCACGAAATGAAACAAACTACTGAG
GAGATGCGGAAAACACAGCCGCTGTTTGATGCCTATCCAGATCTGTTGAA
AGATGAAAAGTTTGTCTTTCACCGCGATGAACTGAATGCTTCCACACACG
ACTTGGTGTGCACGCCTCGTCTCACCGTTGGCGCAAAGATTGGAAATGGG
GCGCACGAAAGAGTTTGTCGCTCTCTAAGACAAAGAGCGCATGAGTTTTA
TGGCATTAAACAGAATGAAAAGAAGAGATTAGGGCATATTCACTATGCTC
AACCTCCCAAACGAATTGTGATTCTGCAGCGGCATGTCACGAGACGGATT
GGGAACCTGGAACAGCTGCACGACAGTCTCAAACAGGCGTTTGAGGACAA
GGGTGTGGAGATAGAGGTGGTGACTACCAAGGAGCTGGTAACAGCTGAGC
AATATGTGCGGGTGTTTTCCAGAGCGGGGGTCCTGCTGACACCGCATGGC
TCACAGTCCATGGGCCAACTATACATGCCACGACACAGTTCATTGATCGA
GATCATGCCCGTGGGCTACACGGACTATGCATTCAACCTGTTGTCAGAGT
CGTGCAAGATATGGTATTACGAATTGCAAAGCATGAGACATCCAAACAAG
AGCAAGGAGTGGTATGAAGAAAAGTGCGGGAAGCTGGTGCCACACATGAT
GAACCCATGTACGGCCGTGAAGGCGGTGGACGTGTGGGTTAATATTAGCA
GCGCGGTGCGGACGATCAAGTTTGCGATGGAACGAATGGGATATCCGATG
GATGCGTGGATGGAGTATGTACAGAGCGGCGGTTGA