Gchil10134.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10134.t1
Unique NameGchil10134.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1212135..1213412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10134Gchil10134Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1212135..1213412 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10134.t1.stop1Gchil10134.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1212135..1212137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10134.t1.CDS1Gchil10134.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1212135..1213412 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10134.t1.exon1Gchil10134.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1212135..1213412 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10134.t1.start1Gchil10134.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1213410..1213412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10134.t1Gchil10134.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1212135..1213412 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10134.t1 ID=Gchil10134.t1|Name=Gchil10134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MASALRNSAAMSTHLAIHDMFSSILSAVDKRVVQQHNLACNIRAEPWIQA
SIDSSRVLQIFEPDLVCQSSINIRSAIQQQELHPSLLRDSLHLLSDAANH
VKVAAQTSLPSLCRSQHLELFDEYYALSAWNFFQDAQHCRLENAMAYRVN
STLYVHTAVTNHPVHHYVPDLQRAILSEFVDRRFQTLKMVHPRWSDSQNE
LASTIVQQSEGRAEFASVRMSAEQNTALADALKHNHVIIDLARDAIVPSN
IAILALPMIMTLVPVAFVGELSTLATLLYVVLTDLLSTIPFVIKGFELYN
SARINRNEMVAYHVGTKENGKIELWVARCTGSDGFQRVGIGFLVFALCTT
ALGLLLEVYAWNKMRKKRLQSQTQGHPTGAYSPHERPQGPFGELVHDTGL
FAQNDKYEMIGYEMDMIGLGTRRRR*
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spliced messenger RNA

>Gchil10134.t1 ID=Gchil10134.t1|Name=Gchil10134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004442_pilon:1212135..1213412- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGCCTTGCGCAATTCTGCAGCAATGTCTACCCATCTCGCAAT
TCACGACATGTTTTCGTCTATTCTCTCCGCTGTAGATAAGCGTGTTGTTC
AACAGCACAACCTCGCATGTAATATTCGCGCCGAGCCCTGGATACAAGCT
TCAATCGATTCCTCGCGTGTCTTGCAAATATTTGAGCCGGACCTCGTTTG
TCAGAGTAGTATTAATATTCGCTCTGCCATTCAACAACAAGAATTGCACC
CTTCTCTTCTCCGGGATTCTTTGCATCTCCTATCAGATGCAGCAAACCAC
GTCAAGGTTGCCGCTCAAACTTCTCTGCCTTCGCTCTGTAGATCACAACA
TTTGGAGCTGTTTGACGAGTATTACGCGTTGTCCGCCTGGAACTTCTTTC
AAGATGCCCAACATTGCCGTCTAGAAAACGCAATGGCGTACCGAGTCAAC
AGCACCTTGTATGTGCATACAGCCGTCACCAACCACCCTGTGCATCACTA
CGTACCGGATTTACAGCGAGCTATATTGTCCGAGTTTGTCGACAGACGCT
TCCAGACCTTGAAAATGGTACATCCGCGATGGAGTGATTCACAGAATGAA
CTAGCGTCTACGATTGTACAGCAAAGTGAGGGGAGGGCTGAATTTGCCAG
CGTCAGAATGTCCGCCGAACAGAATACAGCCCTGGCTGATGCGTTGAAAC
ACAATCACGTCATCATTGATCTCGCAAGAGACGCCATTGTTCCCAGTAAC
ATTGCTATACTTGCTCTACCTATGATTATGACTCTTGTTCCCGTCGCCTT
TGTCGGTGAATTGAGCACGTTGGCAACTTTGCTGTACGTTGTTCTTACAG
ATTTGTTATCCACCATACCGTTTGTGATCAAAGGCTTTGAACTGTACAAC
TCTGCACGTATCAACAGAAACGAGATGGTTGCATATCATGTTGGCACCAA
AGAAAATGGCAAGATTGAGCTTTGGGTCGCCAGATGCACTGGTTCCGATG
GCTTTCAAAGGGTTGGTATTGGATTTCTCGTCTTTGCACTGTGCACAACT
GCGCTTGGCCTCTTGCTTGAGGTTTATGCGTGGAATAAAATGAGAAAGAA
ACGACTTCAGTCCCAAACACAGGGCCATCCCACGGGCGCTTATTCGCCGC
ATGAACGTCCTCAAGGTCCATTTGGAGAGTTGGTTCATGACACTGGTTTG
TTTGCTCAGAACGACAAGTATGAAATGATTGGGTACGAAATGGACATGAT
TGGGTTGGGAACCAGGAGGAGGCGATGA
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protein sequence of Gchil10134.t1

>Gchil10134.t1 ID=Gchil10134.t1|Name=Gchil10134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MASALRNSAAMSTHLAIHDMFSSILSAVDKRVVQQHNLACNIRAEPWIQA
SIDSSRVLQIFEPDLVCQSSINIRSAIQQQELHPSLLRDSLHLLSDAANH
VKVAAQTSLPSLCRSQHLELFDEYYALSAWNFFQDAQHCRLENAMAYRVN
STLYVHTAVTNHPVHHYVPDLQRAILSEFVDRRFQTLKMVHPRWSDSQNE
LASTIVQQSEGRAEFASVRMSAEQNTALADALKHNHVIIDLARDAIVPSN
IAILALPMIMTLVPVAFVGELSTLATLLYVVLTDLLSTIPFVIKGFELYN
SARINRNEMVAYHVGTKENGKIELWVARCTGSDGFQRVGIGFLVFALCTT
ALGLLLEVYAWNKMRKKRLQSQTQGHPTGAYSPHERPQGPFGELVHDTGL
FAQNDKYEMIGYEMDMIGLGTRRRR*
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mRNA from alignment at tig00004442_pilon:1212135..1213412-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10134.t1 ID=Gchil10134.t1|Name=Gchil10134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004442_pilon:1212135..1213412- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCCGCCTTGCGCAATTCTGCAGCAATGTCTACCCATCTCGCAAT
TCACGACATGTTTTCGTCTATTCTCTCCGCTGTAGATAAGCGTGTTGTTC
AACAGCACAACCTCGCATGTAATATTCGCGCCGAGCCCTGGATACAAGCT
TCAATCGATTCCTCGCGTGTCTTGCAAATATTTGAGCCGGACCTCGTTTG
TCAGAGTAGTATTAATATTCGCTCTGCCATTCAACAACAAGAATTGCACC
CTTCTCTTCTCCGGGATTCTTTGCATCTCCTATCAGATGCAGCAAACCAC
GTCAAGGTTGCCGCTCAAACTTCTCTGCCTTCGCTCTGTAGATCACAACA
TTTGGAGCTGTTTGACGAGTATTACGCGTTGTCCGCCTGGAACTTCTTTC
AAGATGCCCAACATTGCCGTCTAGAAAACGCAATGGCGTACCGAGTCAAC
AGCACCTTGTATGTGCATACAGCCGTCACCAACCACCCTGTGCATCACTA
CGTACCGGATTTACAGCGAGCTATATTGTCCGAGTTTGTCGACAGACGCT
TCCAGACCTTGAAAATGGTACATCCGCGATGGAGTGATTCACAGAATGAA
CTAGCGTCTACGATTGTACAGCAAAGTGAGGGGAGGGCTGAATTTGCCAG
CGTCAGAATGTCCGCCGAACAGAATACAGCCCTGGCTGATGCGTTGAAAC
ACAATCACGTCATCATTGATCTCGCAAGAGACGCCATTGTTCCCAGTAAC
ATTGCTATACTTGCTCTACCTATGATTATGACTCTTGTTCCCGTCGCCTT
TGTCGGTGAATTGAGCACGTTGGCAACTTTGCTGTACGTTGTTCTTACAG
ATTTGTTATCCACCATACCGTTTGTGATCAAAGGCTTTGAACTGTACAAC
TCTGCACGTATCAACAGAAACGAGATGGTTGCATATCATGTTGGCACCAA
AGAAAATGGCAAGATTGAGCTTTGGGTCGCCAGATGCACTGGTTCCGATG
GCTTTCAAAGGGTTGGTATTGGATTTCTCGTCTTTGCACTGTGCACAACT
GCGCTTGGCCTCTTGCTTGAGGTTTATGCGTGGAATAAAATGAGAAAGAA
ACGACTTCAGTCCCAAACACAGGGCCATCCCACGGGCGCTTATTCGCCGC
ATGAACGTCCTCAAGGTCCATTTGGAGAGTTGGTTCATGACACTGGTTTG
TTTGCTCAGAACGACAAGTATGAAATGATTGGGTACGAAATGGACATGAT
TGGGTTGGGAACCAGGAGGAGGCGATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1212135..1213412-

>Gchil10134.t1 ID=Gchil10134.t1|Name=Gchil10134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004442_pilon:1212135..1213412- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCCGCCTTGCGCAATTCTGCAGCAATGTCTACCCATCTCGCAAT
TCACGACATGTTTTCGTCTATTCTCTCCGCTGTAGATAAGCGTGTTGTTC
AACAGCACAACCTCGCATGTAATATTCGCGCCGAGCCCTGGATACAAGCT
TCAATCGATTCCTCGCGTGTCTTGCAAATATTTGAGCCGGACCTCGTTTG
TCAGAGTAGTATTAATATTCGCTCTGCCATTCAACAACAAGAATTGCACC
CTTCTCTTCTCCGGGATTCTTTGCATCTCCTATCAGATGCAGCAAACCAC
GTCAAGGTTGCCGCTCAAACTTCTCTGCCTTCGCTCTGTAGATCACAACA
TTTGGAGCTGTTTGACGAGTATTACGCGTTGTCCGCCTGGAACTTCTTTC
AAGATGCCCAACATTGCCGTCTAGAAAACGCAATGGCGTACCGAGTCAAC
AGCACCTTGTATGTGCATACAGCCGTCACCAACCACCCTGTGCATCACTA
CGTACCGGATTTACAGCGAGCTATATTGTCCGAGTTTGTCGACAGACGCT
TCCAGACCTTGAAAATGGTACATCCGCGATGGAGTGATTCACAGAATGAA
CTAGCGTCTACGATTGTACAGCAAAGTGAGGGGAGGGCTGAATTTGCCAG
CGTCAGAATGTCCGCCGAACAGAATACAGCCCTGGCTGATGCGTTGAAAC
ACAATCACGTCATCATTGATCTCGCAAGAGACGCCATTGTTCCCAGTAAC
ATTGCTATACTTGCTCTACCTATGATTATGACTCTTGTTCCCGTCGCCTT
TGTCGGTGAATTGAGCACGTTGGCAACTTTGCTGTACGTTGTTCTTACAG
ATTTGTTATCCACCATACCGTTTGTGATCAAAGGCTTTGAACTGTACAAC
TCTGCACGTATCAACAGAAACGAGATGGTTGCATATCATGTTGGCACCAA
AGAAAATGGCAAGATTGAGCTTTGGGTCGCCAGATGCACTGGTTCCGATG
GCTTTCAAAGGGTTGGTATTGGATTTCTCGTCTTTGCACTGTGCACAACT
GCGCTTGGCCTCTTGCTTGAGGTTTATGCGTGGAATAAAATGAGAAAGAA
ACGACTTCAGTCCCAAACACAGGGCCATCCCACGGGCGCTTATTCGCCGC
ATGAACGTCCTCAAGGTCCATTTGGAGAGTTGGTTCATGACACTGGTTTG
TTTGCTCAGAACGACAAGTATGAAATGATTGGGTACGAAATGGACATGAT
TGGGTTGGGAACCAGGAGGAGGCGATGA
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