Gchil10132.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10132.t1
Unique NameGchil10132.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length545
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1206836..1208470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10132Gchil10132Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1206836..1208470 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10132.t1.start1Gchil10132.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1206836..1206838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10132.t1.CDS1Gchil10132.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1206836..1208470 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10132.t1.exon1Gchil10132.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1206836..1208470 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10132.t1.stop1Gchil10132.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1208468..1208470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10132.t1Gchil10132.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1206836..1208470 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10132.t1 ID=Gchil10132.t1|Name=Gchil10132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=545bp
MDQRRDDPTSEKGCNLHRELDWVKNMPDAARKRQILSARDGIDETCPSRV
DFSRDASQDNYTMKNSQDVKKIFKEAVLSMKSAVLSSRASPLKSKLEKWK
DTVFPLAGWDLRRLSQQCELLSVSAFRVKGKLFMRVAVTNRPVDDFVLDY
DRQVIEEWVKEDFQDSLNMTHPREVRSVDNESDFEVSTTLLEKWSGRAGL
ASHGSMSMDDNPAIDEALRQNSVAIDLAVDAVAVSNIAILILPLTMNLIP
VAFLAELNTLAMLAYIMFTDVFSTLPFLVKGVELIRAVDLERHETVAYYV
GDKKFGEIEVWNASCRGEGKFHAIGVSFVVIAVVAIVLGVFLEGFAGFVM
RRRRRKEGSAAEGPFGRAAFDSTKLSLLGSGTDKDGLERRYSIDTDDVRD
ESDTETRQSSEESTNRKNHRWWMWGSKSASPQTASAMAAEVMLSVDSDVL
SADVMARDGSYFSDEKELRRARIQAGSWMMKGFEKLLNLFGGSRGEESEE
FSVGVGSDGMSSAERAARERGCEGYTSGYDEEEGGGGGRHSFSV*
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spliced messenger RNA

>Gchil10132.t1 ID=Gchil10132.t1|Name=Gchil10132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00004442_pilon:1206836..1208470+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAACGTCGCGATGATCCGACCAGTGAAAAGGGATGCAATCTCCA
TCGGGAGTTGGATTGGGTTAAAAATATGCCGGACGCGGCCAGGAAACGTC
AAATACTTAGTGCAAGAGACGGGATTGATGAAACCTGTCCTTCACGAGTG
GATTTTTCCAGGGATGCGTCACAAGACAACTATACGATGAAAAACAGCCA
GGACGTGAAAAAAATCTTCAAAGAAGCTGTGCTTTCGATGAAGTCTGCTG
TGTTATCTAGCAGAGCATCACCGTTGAAATCAAAATTGGAGAAATGGAAA
GACACTGTTTTTCCTCTCGCTGGTTGGGACCTCCGGCGCCTTTCTCAGCA
ATGTGAGTTGCTATCAGTATCTGCTTTTCGAGTGAAAGGGAAACTATTCA
TGCGAGTCGCGGTTACAAATCGGCCAGTCGATGACTTCGTTTTGGACTAT
GATCGTCAAGTAATCGAGGAATGGGTCAAAGAAGACTTTCAAGACTCCCT
TAACATGACCCATCCCAGGGAAGTTCGTTCAGTAGATAACGAGAGTGATT
TCGAAGTATCGACGACTCTCCTGGAAAAGTGGAGTGGGAGAGCTGGTCTA
GCTTCGCATGGGTCCATGTCCATGGATGATAATCCCGCTATTGATGAAGC
GTTGAGGCAGAATTCGGTTGCTATTGATCTGGCAGTAGATGCCGTTGCAG
TCAGCAACATTGCCATCCTTATCCTGCCCTTAACTATGAACCTTATCCCT
GTTGCCTTTTTGGCAGAATTGAACACTCTTGCAATGCTTGCGTACATTAT
GTTCACGGATGTTTTTTCGACGCTTCCGTTTCTTGTCAAGGGCGTGGAGC
TTATTCGAGCAGTTGATCTTGAGCGCCATGAAACGGTTGCGTACTATGTG
GGAGATAAAAAGTTTGGAGAGATTGAAGTGTGGAATGCAAGTTGTAGGGG
CGAAGGTAAATTCCACGCGATCGGAGTGTCATTTGTGGTGATTGCTGTGG
TTGCGATTGTACTTGGTGTATTTCTGGAGGGGTTTGCGGGATTTGTGATG
AGAAGGAGACGGAGAAAAGAGGGTTCAGCTGCCGAAGGGCCGTTTGGAAG
GGCGGCTTTCGATTCCACGAAGTTGAGTCTGCTAGGTAGTGGGACCGACA
AGGATGGATTAGAGAGAAGGTACTCCATCGATACAGACGATGTTCGAGAC
GAATCTGACACAGAAACTAGGCAGTCTTCTGAGGAGTCTACTAATAGAAA
GAATCATAGGTGGTGGATGTGGGGTTCGAAGAGCGCTTCTCCTCAAACTG
CGTCGGCCATGGCAGCTGAAGTGATGTTGAGTGTGGATAGTGATGTTTTA
AGCGCTGATGTGATGGCTAGAGATGGATCTTACTTTTCGGACGAGAAAGA
GCTGAGAAGGGCAAGAATTCAGGCTGGAAGCTGGATGATGAAAGGGTTTG
AGAAGCTTTTGAATTTGTTTGGTGGAAGCCGAGGTGAAGAAAGTGAAGAG
TTCTCCGTTGGGGTTGGAAGTGATGGAATGTCTAGCGCTGAACGGGCTGC
GAGAGAAAGGGGGTGCGAGGGATACACATCTGGGTATGATGAAGAGGAGG
GAGGAGGAGGCGGGAGACATTCGTTCTCGGTATGA
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protein sequence of Gchil10132.t1

>Gchil10132.t1 ID=Gchil10132.t1|Name=Gchil10132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=545bp
MDQRRDDPTSEKGCNLHRELDWVKNMPDAARKRQILSARDGIDETCPSRV
DFSRDASQDNYTMKNSQDVKKIFKEAVLSMKSAVLSSRASPLKSKLEKWK
DTVFPLAGWDLRRLSQQCELLSVSAFRVKGKLFMRVAVTNRPVDDFVLDY
DRQVIEEWVKEDFQDSLNMTHPREVRSVDNESDFEVSTTLLEKWSGRAGL
ASHGSMSMDDNPAIDEALRQNSVAIDLAVDAVAVSNIAILILPLTMNLIP
VAFLAELNTLAMLAYIMFTDVFSTLPFLVKGVELIRAVDLERHETVAYYV
GDKKFGEIEVWNASCRGEGKFHAIGVSFVVIAVVAIVLGVFLEGFAGFVM
RRRRRKEGSAAEGPFGRAAFDSTKLSLLGSGTDKDGLERRYSIDTDDVRD
ESDTETRQSSEESTNRKNHRWWMWGSKSASPQTASAMAAEVMLSVDSDVL
SADVMARDGSYFSDEKELRRARIQAGSWMMKGFEKLLNLFGGSRGEESEE
FSVGVGSDGMSSAERAARERGCEGYTSGYDEEEGGGGGRHSFSV*
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mRNA from alignment at tig00004442_pilon:1206836..1208470+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10132.t1 ID=Gchil10132.t1|Name=Gchil10132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at tig00004442_pilon:1206836..1208470+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAACGTCGCGATGATCCGACCAGTGAAAAGGGATGCAATCTCCA
TCGGGAGTTGGATTGGGTTAAAAATATGCCGGACGCGGCCAGGAAACGTC
AAATACTTAGTGCAAGAGACGGGATTGATGAAACCTGTCCTTCACGAGTG
GATTTTTCCAGGGATGCGTCACAAGACAACTATACGATGAAAAACAGCCA
GGACGTGAAAAAAATCTTCAAAGAAGCTGTGCTTTCGATGAAGTCTGCTG
TGTTATCTAGCAGAGCATCACCGTTGAAATCAAAATTGGAGAAATGGAAA
GACACTGTTTTTCCTCTCGCTGGTTGGGACCTCCGGCGCCTTTCTCAGCA
ATGTGAGTTGCTATCAGTATCTGCTTTTCGAGTGAAAGGGAAACTATTCA
TGCGAGTCGCGGTTACAAATCGGCCAGTCGATGACTTCGTTTTGGACTAT
GATCGTCAAGTAATCGAGGAATGGGTCAAAGAAGACTTTCAAGACTCCCT
TAACATGACCCATCCCAGGGAAGTTCGTTCAGTAGATAACGAGAGTGATT
TCGAAGTATCGACGACTCTCCTGGAAAAGTGGAGTGGGAGAGCTGGTCTA
GCTTCGCATGGGTCCATGTCCATGGATGATAATCCCGCTATTGATGAAGC
GTTGAGGCAGAATTCGGTTGCTATTGATCTGGCAGTAGATGCCGTTGCAG
TCAGCAACATTGCCATCCTTATCCTGCCCTTAACTATGAACCTTATCCCT
GTTGCCTTTTTGGCAGAATTGAACACTCTTGCAATGCTTGCGTACATTAT
GTTCACGGATGTTTTTTCGACGCTTCCGTTTCTTGTCAAGGGCGTGGAGC
TTATTCGAGCAGTTGATCTTGAGCGCCATGAAACGGTTGCGTACTATGTG
GGAGATAAAAAGTTTGGAGAGATTGAAGTGTGGAATGCAAGTTGTAGGGG
CGAAGGTAAATTCCACGCGATCGGAGTGTCATTTGTGGTGATTGCTGTGG
TTGCGATTGTACTTGGTGTATTTCTGGAGGGGTTTGCGGGATTTGTGATG
AGAAGGAGACGGAGAAAAGAGGGTTCAGCTGCCGAAGGGCCGTTTGGAAG
GGCGGCTTTCGATTCCACGAAGTTGAGTCTGCTAGGTAGTGGGACCGACA
AGGATGGATTAGAGAGAAGGTACTCCATCGATACAGACGATGTTCGAGAC
GAATCTGACACAGAAACTAGGCAGTCTTCTGAGGAGTCTACTAATAGAAA
GAATCATAGGTGGTGGATGTGGGGTTCGAAGAGCGCTTCTCCTCAAACTG
CGTCGGCCATGGCAGCTGAAGTGATGTTGAGTGTGGATAGTGATGTTTTA
AGCGCTGATGTGATGGCTAGAGATGGATCTTACTTTTCGGACGAGAAAGA
GCTGAGAAGGGCAAGAATTCAGGCTGGAAGCTGGATGATGAAAGGGTTTG
AGAAGCTTTTGAATTTGTTTGGTGGAAGCCGAGGTGAAGAAAGTGAAGAG
TTCTCCGTTGGGGTTGGAAGTGATGGAATGTCTAGCGCTGAACGGGCTGC
GAGAGAAAGGGGGTGCGAGGGATACACATCTGGGTATGATGAAGAGGAGG
GAGGAGGAGGCGGGAGACATTCGTTCTCGGTATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1206836..1208470+

>Gchil10132.t1 ID=Gchil10132.t1|Name=Gchil10132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1635bp|location=Sequence derived from alignment at tig00004442_pilon:1206836..1208470+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAACGTCGCGATGATCCGACCAGTGAAAAGGGATGCAATCTCCA
TCGGGAGTTGGATTGGGTTAAAAATATGCCGGACGCGGCCAGGAAACGTC
AAATACTTAGTGCAAGAGACGGGATTGATGAAACCTGTCCTTCACGAGTG
GATTTTTCCAGGGATGCGTCACAAGACAACTATACGATGAAAAACAGCCA
GGACGTGAAAAAAATCTTCAAAGAAGCTGTGCTTTCGATGAAGTCTGCTG
TGTTATCTAGCAGAGCATCACCGTTGAAATCAAAATTGGAGAAATGGAAA
GACACTGTTTTTCCTCTCGCTGGTTGGGACCTCCGGCGCCTTTCTCAGCA
ATGTGAGTTGCTATCAGTATCTGCTTTTCGAGTGAAAGGGAAACTATTCA
TGCGAGTCGCGGTTACAAATCGGCCAGTCGATGACTTCGTTTTGGACTAT
GATCGTCAAGTAATCGAGGAATGGGTCAAAGAAGACTTTCAAGACTCCCT
TAACATGACCCATCCCAGGGAAGTTCGTTCAGTAGATAACGAGAGTGATT
TCGAAGTATCGACGACTCTCCTGGAAAAGTGGAGTGGGAGAGCTGGTCTA
GCTTCGCATGGGTCCATGTCCATGGATGATAATCCCGCTATTGATGAAGC
GTTGAGGCAGAATTCGGTTGCTATTGATCTGGCAGTAGATGCCGTTGCAG
TCAGCAACATTGCCATCCTTATCCTGCCCTTAACTATGAACCTTATCCCT
GTTGCCTTTTTGGCAGAATTGAACACTCTTGCAATGCTTGCGTACATTAT
GTTCACGGATGTTTTTTCGACGCTTCCGTTTCTTGTCAAGGGCGTGGAGC
TTATTCGAGCAGTTGATCTTGAGCGCCATGAAACGGTTGCGTACTATGTG
GGAGATAAAAAGTTTGGAGAGATTGAAGTGTGGAATGCAAGTTGTAGGGG
CGAAGGTAAATTCCACGCGATCGGAGTGTCATTTGTGGTGATTGCTGTGG
TTGCGATTGTACTTGGTGTATTTCTGGAGGGGTTTGCGGGATTTGTGATG
AGAAGGAGACGGAGAAAAGAGGGTTCAGCTGCCGAAGGGCCGTTTGGAAG
GGCGGCTTTCGATTCCACGAAGTTGAGTCTGCTAGGTAGTGGGACCGACA
AGGATGGATTAGAGAGAAGGTACTCCATCGATACAGACGATGTTCGAGAC
GAATCTGACACAGAAACTAGGCAGTCTTCTGAGGAGTCTACTAATAGAAA
GAATCATAGGTGGTGGATGTGGGGTTCGAAGAGCGCTTCTCCTCAAACTG
CGTCGGCCATGGCAGCTGAAGTGATGTTGAGTGTGGATAGTGATGTTTTA
AGCGCTGATGTGATGGCTAGAGATGGATCTTACTTTTCGGACGAGAAAGA
GCTGAGAAGGGCAAGAATTCAGGCTGGAAGCTGGATGATGAAAGGGTTTG
AGAAGCTTTTGAATTTGTTTGGTGGAAGCCGAGGTGAAGAAAGTGAAGAG
TTCTCCGTTGGGGTTGGAAGTGATGGAATGTCTAGCGCTGAACGGGCTGC
GAGAGAAAGGGGGTGCGAGGGATACACATCTGGGTATGATGAAGAGGAGG
GAGGAGGAGGCGGGAGACATTCGTTCTCGGTATGA
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