Gchil10131.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10131.t1
Unique Name	Gchil10131.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1141968..1143705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	649638.Trad_0936
PFAMs	Big_2,SBBP
Max annot lvl	1297\|Deinococcus-Thermus
Evalue	2.55e-09
EggNOG OGs	COG1520@1\|root,COG1520@2\|Bacteria,1WKKN@1297\|Deinococcus-Thermus
Description	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
COG category	N

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10131	Gchil10131	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1141968..1143705 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10131.t1	Gchil10131.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1141968..1143705 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10131.t1.start1	Gchil10131.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1141968..1141970 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10131.t1.CDS1	Gchil10131.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1141968..1143605 +
Gchil10131.t1.CDS2	Gchil10131.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1143682..1143705 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10131.t1.exon1	Gchil10131.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1141968..1143605 +
Gchil10131.t1.exon2	Gchil10131.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1143682..1143705 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10131.t1.intron1	Gchil10131.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004442_pilon 1143606..1143681 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10131.t1.stop1	Gchil10131.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1143703..1143705 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1141968..1143705+
coding sequence from alignment at tig00004442_pilon:1141968..1143705+

mRNA sequence

>Gchil10131.t1 ID=Gchil10131.t1|Name=Gchil10131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=554bp
MTSICLLSIALISMTLYVAHTLPSTESQFRAFRVGLSSEGYTSAVSLTTD
NHGNTFVVGNTNGSFGKADGENVSADSIFIAKFSRSGILIWLTRTGSASL
DKATSIYHFGANLYVTGYTLGNVTLSEQSIGTKFSRGTKDGFVMVYNSFA
GKRIWAKQYGSKHAETQIEHVVVSRLAGVVIAGRTDAPLFVNDKRVVSDG
EFFLLRLSHTTGRIAEKRQLETNAAWPFPWPQRLLIVEESSSLYVVLHTE
EGDVRNMGVVVRMPLQHFDTFERVLTVGEDVLDENIYYGLAHEGQTGKLA
LSFTKGSTDSLANPMRPAFALRIISNNSRPRQWTERMFSFDQGDEDIVKD
VVVNDAGFAMVMGVSKDEGLNKDNRTGVNSWPSLWVYDVRKMMTVGSHVS
KNLDGFHCDKITKFDLDSDGNLVYSGVRTRADGTGEVLLGSFGVPPEYKW
RAGEGVSKPVKIYVLGNGSITTNEMMAVQDSKRSNDSKVETKEDSLSMGA
IASICVGSALVALAFAGFYALVVKRKKRAGRQQNVDSEVRPERLENLFRE
GVS*

spliced messenger RNA

>Gchil10131.t1 ID=Gchil10131.t1|Name=Gchil10131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00004442_pilon:1141968..1143705+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCAATCTGCTTACTTTCAATTGCATTGATAAGCATGACTTTATA
CGTAGCTCACACACTACCGTCAACAGAATCTCAATTTCGCGCCTTTCGAG
TCGGTTTATCGTCCGAAGGATACACCTCGGCCGTGTCATTAACAACAGAC
AACCACGGTAACACTTTCGTTGTGGGAAATACCAATGGCTCATTTGGTAA
GGCAGACGGTGAAAATGTGAGCGCAGATAGCATATTTATTGCTAAGTTTA
GTCGCTCTGGGATACTGATATGGCTTACCAGAACTGGGTCGGCGTCTCTC
GACAAGGCAACTTCGATATATCACTTCGGAGCGAATCTATACGTAACAGG
GTATACTTTAGGAAACGTAACCCTTAGTGAACAGTCAATAGGAACAAAAT
TCTCCCGTGGTACAAAAGATGGATTTGTGATGGTTTACAATTCCTTTGCT
GGGAAAAGGATATGGGCCAAACAGTATGGATCAAAGCATGCAGAAACACA
AATCGAGCATGTGGTCGTTTCCAGACTTGCAGGTGTTGTAATCGCAGGCA
GGACGGATGCCCCACTATTCGTGAATGACAAGCGAGTAGTGAGCGACGGT
GAATTCTTTCTGCTTCGATTGAGCCATACCACCGGTCGTATTGCAGAAAA
ACGACAGTTGGAGACCAACGCAGCGTGGCCGTTTCCATGGCCCCAAAGAC
TTCTGATCGTCGAAGAGAGTTCTTCTCTGTATGTTGTTTTACACACAGAA
GAGGGTGATGTACGCAACATGGGGGTTGTGGTACGTATGCCGTTGCAGCA
TTTCGACACGTTTGAACGAGTGTTAACTGTAGGAGAAGATGTGCTTGATG
AAAACATCTATTATGGGCTGGCACACGAAGGACAAACCGGAAAACTGGCC
CTCTCATTCACCAAAGGGTCAACGGACTCTTTAGCAAACCCCATGAGGCC
GGCTTTTGCATTGCGGATTATTTCGAATAATTCCAGACCTAGGCAATGGA
CGGAGAGGATGTTCAGCTTTGATCAAGGTGATGAAGACATCGTAAAGGAT
GTCGTCGTAAATGACGCCGGATTCGCTATGGTAATGGGGGTTTCAAAAGA
CGAGGGGTTGAATAAAGACAACCGAACCGGCGTAAATTCATGGCCGTCTC
TATGGGTGTATGATGTTCGCAAGATGATGACAGTGGGTTCCCATGTTTCA
AAAAATTTAGATGGGTTTCATTGCGACAAAATTACGAAGTTTGATTTGGA
CAGTGATGGAAACCTTGTGTACTCCGGAGTACGAACCAGAGCAGATGGAA
CAGGAGAAGTTTTGTTGGGAAGTTTTGGTGTACCGCCCGAATATAAGTGG
AGAGCAGGAGAAGGAGTATCGAAGCCAGTGAAAATATACGTACTGGGTAA
CGGCTCAATTACAACCAATGAAATGATGGCGGTGCAAGATTCAAAAAGGT
CGAACGACAGTAAGGTGGAAACAAAAGAAGATTCGCTTAGCATGGGTGCC
ATTGCCAGCATATGTGTTGGTTCGGCTTTGGTTGCACTGGCTTTTGCAGG
GTTTTATGCCTTAGTTGTGAAGAGAAAGAAGCGAGCGGGTAGGCAGCAGA
ACGTGGATTCTGAAGTTCGTCCAGAGCGCTTGGAAAATCTTTTTCGCGAA
GGGGTTTCCTGA

protein sequence of Gchil10131.t1

>Gchil10131.t1 ID=Gchil10131.t1|Name=Gchil10131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=554bp
MTSICLLSIALISMTLYVAHTLPSTESQFRAFRVGLSSEGYTSAVSLTTD
NHGNTFVVGNTNGSFGKADGENVSADSIFIAKFSRSGILIWLTRTGSASL
DKATSIYHFGANLYVTGYTLGNVTLSEQSIGTKFSRGTKDGFVMVYNSFA
GKRIWAKQYGSKHAETQIEHVVVSRLAGVVIAGRTDAPLFVNDKRVVSDG
EFFLLRLSHTTGRIAEKRQLETNAAWPFPWPQRLLIVEESSSLYVVLHTE
EGDVRNMGVVVRMPLQHFDTFERVLTVGEDVLDENIYYGLAHEGQTGKLA
LSFTKGSTDSLANPMRPAFALRIISNNSRPRQWTERMFSFDQGDEDIVKD
VVVNDAGFAMVMGVSKDEGLNKDNRTGVNSWPSLWVYDVRKMMTVGSHVS
KNLDGFHCDKITKFDLDSDGNLVYSGVRTRADGTGEVLLGSFGVPPEYKW
RAGEGVSKPVKIYVLGNGSITTNEMMAVQDSKRSNDSKVETKEDSLSMGA
IASICVGSALVALAFAGFYALVVKRKKRAGRQQNVDSEVRPERLENLFRE
GVS*

mRNA from alignment at tig00004442_pilon:1141968..1143705+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10131.t1 ID=Gchil10131.t1|Name=Gchil10131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1738bp|location=Sequence derived from alignment at tig00004442_pilon:1141968..1143705+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCAATCTGCTTACTTTCAATTGCATTGATAAGCATGACTTTATA
CGTAGCTCACACACTACCGTCAACAGAATCTCAATTTCGCGCCTTTCGAG
TCGGTTTATCGTCCGAAGGATACACCTCGGCCGTGTCATTAACAACAGAC
AACCACGGTAACACTTTCGTTGTGGGAAATACCAATGGCTCATTTGGTAA
GGCAGACGGTGAAAATGTGAGCGCAGATAGCATATTTATTGCTAAGTTTA
GTCGCTCTGGGATACTGATATGGCTTACCAGAACTGGGTCGGCGTCTCTC
GACAAGGCAACTTCGATATATCACTTCGGAGCGAATCTATACGTAACAGG
GTATACTTTAGGAAACGTAACCCTTAGTGAACAGTCAATAGGAACAAAAT
TCTCCCGTGGTACAAAAGATGGATTTGTGATGGTTTACAATTCCTTTGCT
GGGAAAAGGATATGGGCCAAACAGTATGGATCAAAGCATGCAGAAACACA
AATCGAGCATGTGGTCGTTTCCAGACTTGCAGGTGTTGTAATCGCAGGCA
GGACGGATGCCCCACTATTCGTGAATGACAAGCGAGTAGTGAGCGACGGT
GAATTCTTTCTGCTTCGATTGAGCCATACCACCGGTCGTATTGCAGAAAA
ACGACAGTTGGAGACCAACGCAGCGTGGCCGTTTCCATGGCCCCAAAGAC
TTCTGATCGTCGAAGAGAGTTCTTCTCTGTATGTTGTTTTACACACAGAA
GAGGGTGATGTACGCAACATGGGGGTTGTGGTACGTATGCCGTTGCAGCA
TTTCGACACGTTTGAACGAGTGTTAACTGTAGGAGAAGATGTGCTTGATG
AAAACATCTATTATGGGCTGGCACACGAAGGACAAACCGGAAAACTGGCC
CTCTCATTCACCAAAGGGTCAACGGACTCTTTAGCAAACCCCATGAGGCC
GGCTTTTGCATTGCGGATTATTTCGAATAATTCCAGACCTAGGCAATGGA
CGGAGAGGATGTTCAGCTTTGATCAAGGTGATGAAGACATCGTAAAGGAT
GTCGTCGTAAATGACGCCGGATTCGCTATGGTAATGGGGGTTTCAAAAGA
CGAGGGGTTGAATAAAGACAACCGAACCGGCGTAAATTCATGGCCGTCTC
TATGGGTGTATGATGTTCGCAAGATGATGACAGTGGGTTCCCATGTTTCA
AAAAATTTAGATGGGTTTCATTGCGACAAAATTACGAAGTTTGATTTGGA
CAGTGATGGAAACCTTGTGTACTCCGGAGTACGAACCAGAGCAGATGGAA
CAGGAGAAGTTTTGTTGGGAAGTTTTGGTGTACCGCCCGAATATAAGTGG
AGAGCAGGAGAAGGAGTATCGAAGCCAGTGAAAATATACGTACTGGGTAA
CGGCTCAATTACAACCAATGAAATGATGGCGGTGCAAGATTCAAAAAGGT
CGAACGACAGTAAGGTGGAAACAAAAGAAGATTCGCTTAGCATGGGTGCC
ATTGCCAGCATATGTGTTGGTTCGGCTTTGGTTGCACTGGCTTTTGCAGG
GTTTTATGCCTTAGTTGTGAAGAGAAAGAAGCGAGCGGGTAGGCAGCAGA
ACGTGGATTCTGAAGTTCGTCCAGAGCGCTTGGAAAATGTAAGACCACTG
ATCGCAGCACCAACACGGACGAGACACATCTCAGACCTTTTCTGACCTTT
TCCTATGTTGATAGCTTTTTCGCGAAGGGGTTTCCTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:1141968..1143705+

>Gchil10131.t1 ID=Gchil10131.t1|Name=Gchil10131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00004442_pilon:1141968..1143705+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCAATCTGCTTACTTTCAATTGCATTGATAAGCATGACTTTATA
CGTAGCTCACACACTACCGTCAACAGAATCTCAATTTCGCGCCTTTCGAG
TCGGTTTATCGTCCGAAGGATACACCTCGGCCGTGTCATTAACAACAGAC
AACCACGGTAACACTTTCGTTGTGGGAAATACCAATGGCTCATTTGGTAA
GGCAGACGGTGAAAATGTGAGCGCAGATAGCATATTTATTGCTAAGTTTA
GTCGCTCTGGGATACTGATATGGCTTACCAGAACTGGGTCGGCGTCTCTC
GACAAGGCAACTTCGATATATCACTTCGGAGCGAATCTATACGTAACAGG
GTATACTTTAGGAAACGTAACCCTTAGTGAACAGTCAATAGGAACAAAAT
TCTCCCGTGGTACAAAAGATGGATTTGTGATGGTTTACAATTCCTTTGCT
GGGAAAAGGATATGGGCCAAACAGTATGGATCAAAGCATGCAGAAACACA
AATCGAGCATGTGGTCGTTTCCAGACTTGCAGGTGTTGTAATCGCAGGCA
GGACGGATGCCCCACTATTCGTGAATGACAAGCGAGTAGTGAGCGACGGT
GAATTCTTTCTGCTTCGATTGAGCCATACCACCGGTCGTATTGCAGAAAA
ACGACAGTTGGAGACCAACGCAGCGTGGCCGTTTCCATGGCCCCAAAGAC
TTCTGATCGTCGAAGAGAGTTCTTCTCTGTATGTTGTTTTACACACAGAA
GAGGGTGATGTACGCAACATGGGGGTTGTGGTACGTATGCCGTTGCAGCA
TTTCGACACGTTTGAACGAGTGTTAACTGTAGGAGAAGATGTGCTTGATG
AAAACATCTATTATGGGCTGGCACACGAAGGACAAACCGGAAAACTGGCC
CTCTCATTCACCAAAGGGTCAACGGACTCTTTAGCAAACCCCATGAGGCC
GGCTTTTGCATTGCGGATTATTTCGAATAATTCCAGACCTAGGCAATGGA
CGGAGAGGATGTTCAGCTTTGATCAAGGTGATGAAGACATCGTAAAGGAT
GTCGTCGTAAATGACGCCGGATTCGCTATGGTAATGGGGGTTTCAAAAGA
CGAGGGGTTGAATAAAGACAACCGAACCGGCGTAAATTCATGGCCGTCTC
TATGGGTGTATGATGTTCGCAAGATGATGACAGTGGGTTCCCATGTTTCA
AAAAATTTAGATGGGTTTCATTGCGACAAAATTACGAAGTTTGATTTGGA
CAGTGATGGAAACCTTGTGTACTCCGGAGTACGAACCAGAGCAGATGGAA
CAGGAGAAGTTTTGTTGGGAAGTTTTGGTGTACCGCCCGAATATAAGTGG
AGAGCAGGAGAAGGAGTATCGAAGCCAGTGAAAATATACGTACTGGGTAA
CGGCTCAATTACAACCAATGAAATGATGGCGGTGCAAGATTCAAAAAGGT
CGAACGACAGTAAGGTGGAAACAAAAGAAGATTCGCTTAGCATGGGTGCC
ATTGCCAGCATATGTGTTGGTTCGGCTTTGGTTGCACTGGCTTTTGCAGG
GTTTTATGCCTTAGTTGTGAAGAGAAAGAAGCGAGCGGGTAGGCAGCAGA
ACGTGGATTCTGAAGTTCGTCCAGAGCGCTTGGAAAATCTTTTTCGCGAA
GGGGTTTCCTGA