Gchil10130.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10130.t1
Unique Name	Gchil10130.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1139867..1141216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G1I4
Preferred name	FLOT2
PFAMs	Band_7,Flot
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07192
KEGG Pathway	ko04910,map04910
GOs	GO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Evalue	1.5e-27
EggNOG OGs	COG2268@1\|root,KOG2668@2759\|Eukaryota
Description	protein localization to membrane raft
COG category	U
BRITE	ko00000,ko00001,ko03036,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10130	Gchil10130	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1139867..1141216 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10130.t1.start1	Gchil10130.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1139867..1139869 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10130.t1.CDS1	Gchil10130.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1139867..1141216 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10130.t1.exon1	Gchil10130.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1139867..1141216 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10130.t1.stop1	Gchil10130.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1141214..1141216 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10130.t1	Gchil10130.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1139867..1141216 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1139867..1141216+
coding sequence from alignment at tig00004442_pilon:1139867..1141216+

mRNA sequence

>Gchil10130.t1 ID=Gchil10130.t1|Name=Gchil10130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp
MFERIDFLNLELRTFNVETRSGICLNGARVNVVGCCQVKIQGWNPSWEES
SASRQSRERIDSSLYADEASILLAAQHFLGKNPQEIDHAIQQTIAAHQRA
IISTLSIEQLIHDRKLFCEKIIDHCRDDLRNMGLAIVSYTLVAVSDDNGY
IDALGYLENARIQREKIESEAQHRSRAKLNEMRRIVTAHINQNKERIRAI
LSQKEMVILDAKAKEKVDRVRAIREKAYPITTAEREAELLVKKQYAKAAE
IAAELVILRREVERKRLAMEKTIQVEADAAYYKRVIKCHRSIAKARARAE
KEIQMGRANAESLAQNVKKTGFAEAAVEAAKIRQKGLAEAEAIRSQGLAD
AEIEMLKAQTIRAEGMAKMDVLEDELRIWSEHGNEAYLIERSIEGFERDM
RAIVDPLVRVDGITVVDVEAQQANVTDTINILAAQLPVIFDALVTNNIS*

spliced messenger RNA

>Gchil10130.t1 ID=Gchil10130.t1|Name=Gchil10130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00004442_pilon:1139867..1141216+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAAAGGATAGATTTCTTGAACCTCGAGCTGCGCACTTTCAATGT
CGAAACCCGAAGCGGTATATGCCTCAACGGCGCACGGGTAAACGTCGTCG
GCTGTTGTCAGGTAAAAATACAAGGCTGGAATCCTTCATGGGAAGAGTCT
TCCGCCAGCCGTCAATCTCGGGAGCGAATTGACTCCTCGTTGTATGCAGA
CGAAGCTTCCATTTTGCTGGCGGCTCAGCACTTTCTTGGCAAGAACCCAC
AAGAGATTGATCATGCCATTCAGCAAACAATTGCCGCTCATCAAAGAGCA
ATTATTAGCACTTTAAGCATCGAGCAACTCATTCACGATCGCAAATTGTT
CTGCGAGAAAATAATCGATCATTGTCGCGATGATTTGCGCAATATGGGAC
TGGCTATCGTATCCTACACACTCGTCGCGGTTTCTGATGACAATGGATAC
ATAGATGCATTAGGCTATCTCGAGAATGCGCGTATTCAAAGAGAAAAGAT
CGAAAGCGAAGCACAACACCGGAGTAGGGCCAAACTGAATGAGATGAGAA
GGATAGTGACAGCCCATATTAATCAGAACAAAGAACGTATACGTGCAATA
CTTTCACAAAAAGAGATGGTGATTCTAGACGCGAAAGCGAAAGAAAAAGT
TGATCGTGTCAGGGCTATTCGAGAGAAGGCGTACCCTATCACCACGGCGG
AAAGGGAAGCAGAATTATTGGTCAAGAAACAATATGCAAAAGCTGCAGAA
ATAGCCGCGGAACTGGTGATCTTGCGTCGAGAAGTTGAAAGAAAAAGACT
TGCGATGGAAAAGACAATACAGGTAGAAGCAGATGCGGCGTACTACAAGC
GTGTTATCAAGTGCCACCGATCAATTGCTAAGGCACGGGCAAGAGCAGAG
AAGGAAATACAAATGGGAAGAGCGAACGCTGAGTCGCTGGCACAGAACGT
GAAGAAGACGGGATTCGCAGAAGCTGCTGTAGAAGCTGCCAAAATTCGAC
AGAAGGGCCTAGCTGAAGCTGAAGCTATTCGATCGCAAGGTTTGGCTGAT
GCCGAAATTGAAATGTTAAAAGCGCAGACGATACGTGCGGAAGGAATGGC
GAAAATGGATGTCCTTGAGGACGAACTCCGTATTTGGAGCGAGCACGGAA
ACGAGGCCTACCTTATAGAACGAAGTATAGAAGGTTTTGAACGAGACATG
CGAGCTATAGTTGACCCTTTGGTTAGGGTTGATGGAATCACTGTTGTTGA
TGTAGAAGCTCAGCAAGCTAATGTTACAGACACGATCAACATCTTGGCCG
CCCAGCTCCCAGTAATCTTTGACGCCTTGGTAACAAATAATATTTCGTAA

protein sequence of Gchil10130.t1

>Gchil10130.t1 ID=Gchil10130.t1|Name=Gchil10130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=450bp
MFERIDFLNLELRTFNVETRSGICLNGARVNVVGCCQVKIQGWNPSWEES
SASRQSRERIDSSLYADEASILLAAQHFLGKNPQEIDHAIQQTIAAHQRA
IISTLSIEQLIHDRKLFCEKIIDHCRDDLRNMGLAIVSYTLVAVSDDNGY
IDALGYLENARIQREKIESEAQHRSRAKLNEMRRIVTAHINQNKERIRAI
LSQKEMVILDAKAKEKVDRVRAIREKAYPITTAEREAELLVKKQYAKAAE
IAAELVILRREVERKRLAMEKTIQVEADAAYYKRVIKCHRSIAKARARAE
KEIQMGRANAESLAQNVKKTGFAEAAVEAAKIRQKGLAEAEAIRSQGLAD
AEIEMLKAQTIRAEGMAKMDVLEDELRIWSEHGNEAYLIERSIEGFERDM
RAIVDPLVRVDGITVVDVEAQQANVTDTINILAAQLPVIFDALVTNNIS*

mRNA from alignment at tig00004442_pilon:1139867..1141216+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10130.t1 ID=Gchil10130.t1|Name=Gchil10130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00004442_pilon:1139867..1141216+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGAAAGGATAGATTTCTTGAACCTCGAGCTGCGCACTTTCAATGT
CGAAACCCGAAGCGGTATATGCCTCAACGGCGCACGGGTAAACGTCGTCG
GCTGTTGTCAGGTAAAAATACAAGGCTGGAATCCTTCATGGGAAGAGTCT
TCCGCCAGCCGTCAATCTCGGGAGCGAATTGACTCCTCGTTGTATGCAGA
CGAAGCTTCCATTTTGCTGGCGGCTCAGCACTTTCTTGGCAAGAACCCAC
AAGAGATTGATCATGCCATTCAGCAAACAATTGCCGCTCATCAAAGAGCA
ATTATTAGCACTTTAAGCATCGAGCAACTCATTCACGATCGCAAATTGTT
CTGCGAGAAAATAATCGATCATTGTCGCGATGATTTGCGCAATATGGGAC
TGGCTATCGTATCCTACACACTCGTCGCGGTTTCTGATGACAATGGATAC
ATAGATGCATTAGGCTATCTCGAGAATGCGCGTATTCAAAGAGAAAAGAT
CGAAAGCGAAGCACAACACCGGAGTAGGGCCAAACTGAATGAGATGAGAA
GGATAGTGACAGCCCATATTAATCAGAACAAAGAACGTATACGTGCAATA
CTTTCACAAAAAGAGATGGTGATTCTAGACGCGAAAGCGAAAGAAAAAGT
TGATCGTGTCAGGGCTATTCGAGAGAAGGCGTACCCTATCACCACGGCGG
AAAGGGAAGCAGAATTATTGGTCAAGAAACAATATGCAAAAGCTGCAGAA
ATAGCCGCGGAACTGGTGATCTTGCGTCGAGAAGTTGAAAGAAAAAGACT
TGCGATGGAAAAGACAATACAGGTAGAAGCAGATGCGGCGTACTACAAGC
GTGTTATCAAGTGCCACCGATCAATTGCTAAGGCACGGGCAAGAGCAGAG
AAGGAAATACAAATGGGAAGAGCGAACGCTGAGTCGCTGGCACAGAACGT
GAAGAAGACGGGATTCGCAGAAGCTGCTGTAGAAGCTGCCAAAATTCGAC
AGAAGGGCCTAGCTGAAGCTGAAGCTATTCGATCGCAAGGTTTGGCTGAT
GCCGAAATTGAAATGTTAAAAGCGCAGACGATACGTGCGGAAGGAATGGC
GAAAATGGATGTCCTTGAGGACGAACTCCGTATTTGGAGCGAGCACGGAA
ACGAGGCCTACCTTATAGAACGAAGTATAGAAGGTTTTGAACGAGACATG
CGAGCTATAGTTGACCCTTTGGTTAGGGTTGATGGAATCACTGTTGTTGA
TGTAGAAGCTCAGCAAGCTAATGTTACAGACACGATCAACATCTTGGCCG
CCCAGCTCCCAGTAATCTTTGACGCCTTGGTAACAAATAATATTTCGTAA

Coding sequence (CDS) from alignment at tig00004442_pilon:1139867..1141216+

>Gchil10130.t1 ID=Gchil10130.t1|Name=Gchil10130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00004442_pilon:1139867..1141216+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGAAAGGATAGATTTCTTGAACCTCGAGCTGCGCACTTTCAATGT
CGAAACCCGAAGCGGTATATGCCTCAACGGCGCACGGGTAAACGTCGTCG
GCTGTTGTCAGGTAAAAATACAAGGCTGGAATCCTTCATGGGAAGAGTCT
TCCGCCAGCCGTCAATCTCGGGAGCGAATTGACTCCTCGTTGTATGCAGA
CGAAGCTTCCATTTTGCTGGCGGCTCAGCACTTTCTTGGCAAGAACCCAC
AAGAGATTGATCATGCCATTCAGCAAACAATTGCCGCTCATCAAAGAGCA
ATTATTAGCACTTTAAGCATCGAGCAACTCATTCACGATCGCAAATTGTT
CTGCGAGAAAATAATCGATCATTGTCGCGATGATTTGCGCAATATGGGAC
TGGCTATCGTATCCTACACACTCGTCGCGGTTTCTGATGACAATGGATAC
ATAGATGCATTAGGCTATCTCGAGAATGCGCGTATTCAAAGAGAAAAGAT
CGAAAGCGAAGCACAACACCGGAGTAGGGCCAAACTGAATGAGATGAGAA
GGATAGTGACAGCCCATATTAATCAGAACAAAGAACGTATACGTGCAATA
CTTTCACAAAAAGAGATGGTGATTCTAGACGCGAAAGCGAAAGAAAAAGT
TGATCGTGTCAGGGCTATTCGAGAGAAGGCGTACCCTATCACCACGGCGG
AAAGGGAAGCAGAATTATTGGTCAAGAAACAATATGCAAAAGCTGCAGAA
ATAGCCGCGGAACTGGTGATCTTGCGTCGAGAAGTTGAAAGAAAAAGACT
TGCGATGGAAAAGACAATACAGGTAGAAGCAGATGCGGCGTACTACAAGC
GTGTTATCAAGTGCCACCGATCAATTGCTAAGGCACGGGCAAGAGCAGAG
AAGGAAATACAAATGGGAAGAGCGAACGCTGAGTCGCTGGCACAGAACGT
GAAGAAGACGGGATTCGCAGAAGCTGCTGTAGAAGCTGCCAAAATTCGAC
AGAAGGGCCTAGCTGAAGCTGAAGCTATTCGATCGCAAGGTTTGGCTGAT
GCCGAAATTGAAATGTTAAAAGCGCAGACGATACGTGCGGAAGGAATGGC
GAAAATGGATGTCCTTGAGGACGAACTCCGTATTTGGAGCGAGCACGGAA
ACGAGGCCTACCTTATAGAACGAAGTATAGAAGGTTTTGAACGAGACATG
CGAGCTATAGTTGACCCTTTGGTTAGGGTTGATGGAATCACTGTTGTTGA
TGTAGAAGCTCAGCAAGCTAATGTTACAGACACGATCAACATCTTGGCCG
CCCAGCTCCCAGTAATCTTTGACGCCTTGGTAACAAATAATATTTCGTAA