Gchil10127.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10127.t1
Unique Name	Gchil10127.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1094029..1095168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010255380.1
Preferred name	SPPL1
PFAMs	Peptidase_A22B
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09598
GOs	GO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0030660,GO:0031090,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071458,GO:0071556,GO:0097708,GO:0098552,GO:0098553,GO:0098554,GO:0098562,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852
Evalue	1.98e-49
EggNOG OGs	KOG2443@1\|root,KOG2443@2759\|Eukaryota,37R1T@33090\|Viridiplantae,3GB07@35493\|Streptophyta
Description	signal peptide peptidase-like
COG category	S
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10127	Gchil10127	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1094029..1095168 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10127.t1.start1	Gchil10127.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1094029..1094031 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10127.t1.CDS1	Gchil10127.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1094029..1095168 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10127.t1.exon1	Gchil10127.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1094029..1095168 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10127.t1.stop1	Gchil10127.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1095166..1095168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10127.t1	Gchil10127.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1094029..1095168 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1094029..1095168+
coding sequence from alignment at tig00004442_pilon:1094029..1095168+

mRNA sequence

>Gchil10127.t1 ID=Gchil10127.t1|Name=Gchil10127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=380bp
MASELLILLTDGTTLCMVLTATLTAAYSAYRANEPLFKRGSSRVQALSPS
LSEQFVDENRRLLEGSTALAFPIVATVSIIFLFFFIKSFGYILTLLSTVS
SVFSVSFFLWPFAETIISRIRAFGAQIRSNTVFESLIVVPASLAIISYWL
VTGNWLPNNVIGISLCVLFASLCKVPNLKVTVMLFAGLFVYDIFFVFFSE
RFFGRNVMVEVATSAPKNPASAIASFFNLPFTPVKHLALPAKLVFPAGGK
DYAILGLGDIILPEILLTYLLEADLLRSPRRAPWYKGYFPRALVAYTLAL
YASFYCNFVFKNAQPALLYIVPALLVTTLIYARSKGEVFALWTGLAIRHS
SAQVESDLNLDSDGNAVDPKDLESTALVA*

spliced messenger RNA

>Gchil10127.t1 ID=Gchil10127.t1|Name=Gchil10127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00004442_pilon:1094029..1095168+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCGAGCTTCTTATTCTTCTCACCGATGGAACGACCCTGTGTAT
GGTACTTACCGCCACTCTCACAGCTGCTTACTCTGCGTACAGAGCCAATG
AACCTCTCTTCAAGAGGGGTTCATCCCGAGTGCAAGCTTTGTCACCATCG
CTCTCTGAGCAATTCGTGGATGAAAACAGACGCCTGTTAGAGGGTTCTAC
GGCACTTGCGTTTCCCATCGTCGCCACCGTATCAATCATCTTCTTGTTCT
TTTTTATCAAGTCCTTCGGTTATATACTCACCTTGCTTTCCACGGTTTCC
AGTGTTTTCTCCGTCTCTTTCTTCCTGTGGCCGTTTGCTGAAACCATCAT
CTCTCGAATTCGAGCATTTGGCGCTCAAATCCGCTCTAACACTGTCTTCG
AATCTCTGATTGTCGTGCCGGCTTCGCTGGCCATAATTTCCTACTGGTTG
GTTACGGGCAACTGGCTACCGAACAATGTCATTGGAATCAGCTTATGTGT
CCTCTTTGCCTCACTGTGCAAAGTTCCAAATCTCAAAGTAACCGTCATGC
TTTTTGCCGGACTTTTCGTGTATGATATTTTCTTCGTGTTCTTCTCGGAA
CGGTTCTTTGGCCGAAACGTGATGGTAGAAGTCGCCACCTCGGCTCCTAA
GAACCCTGCTTCAGCAATTGCATCCTTTTTTAATTTACCGTTTACGCCAG
TGAAGCATTTAGCTTTACCAGCCAAACTTGTGTTCCCCGCCGGTGGGAAG
GACTATGCCATATTGGGGCTTGGAGATATCATTCTGCCAGAGATTCTTCT
GACCTACCTTCTTGAAGCGGACTTGTTGCGATCTCCTCGACGAGCCCCAT
GGTACAAGGGTTATTTTCCGAGAGCACTCGTAGCGTACACGTTGGCTCTG
TACGCAAGCTTTTATTGCAATTTTGTCTTTAAGAACGCACAGCCCGCTCT
TCTGTATATAGTTCCCGCTCTTCTAGTGACTACTCTGATATATGCTCGAA
GCAAAGGAGAAGTTTTCGCTCTTTGGACTGGTTTAGCAATTCGACACTCC
TCGGCACAAGTTGAATCAGATTTGAACCTTGACAGTGATGGTAATGCAGT
TGACCCAAAAGATCTTGAGTCGACGGCGCTTGTAGCATGA

protein sequence of Gchil10127.t1

>Gchil10127.t1 ID=Gchil10127.t1|Name=Gchil10127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=380bp
MASELLILLTDGTTLCMVLTATLTAAYSAYRANEPLFKRGSSRVQALSPS
LSEQFVDENRRLLEGSTALAFPIVATVSIIFLFFFIKSFGYILTLLSTVS
SVFSVSFFLWPFAETIISRIRAFGAQIRSNTVFESLIVVPASLAIISYWL
VTGNWLPNNVIGISLCVLFASLCKVPNLKVTVMLFAGLFVYDIFFVFFSE
RFFGRNVMVEVATSAPKNPASAIASFFNLPFTPVKHLALPAKLVFPAGGK
DYAILGLGDIILPEILLTYLLEADLLRSPRRAPWYKGYFPRALVAYTLAL
YASFYCNFVFKNAQPALLYIVPALLVTTLIYARSKGEVFALWTGLAIRHS
SAQVESDLNLDSDGNAVDPKDLESTALVA*

mRNA from alignment at tig00004442_pilon:1094029..1095168+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10127.t1 ID=Gchil10127.t1|Name=Gchil10127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00004442_pilon:1094029..1095168+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCCGAGCTTCTTATTCTTCTCACCGATGGAACGACCCTGTGTAT
GGTACTTACCGCCACTCTCACAGCTGCTTACTCTGCGTACAGAGCCAATG
AACCTCTCTTCAAGAGGGGTTCATCCCGAGTGCAAGCTTTGTCACCATCG
CTCTCTGAGCAATTCGTGGATGAAAACAGACGCCTGTTAGAGGGTTCTAC
GGCACTTGCGTTTCCCATCGTCGCCACCGTATCAATCATCTTCTTGTTCT
TTTTTATCAAGTCCTTCGGTTATATACTCACCTTGCTTTCCACGGTTTCC
AGTGTTTTCTCCGTCTCTTTCTTCCTGTGGCCGTTTGCTGAAACCATCAT
CTCTCGAATTCGAGCATTTGGCGCTCAAATCCGCTCTAACACTGTCTTCG
AATCTCTGATTGTCGTGCCGGCTTCGCTGGCCATAATTTCCTACTGGTTG
GTTACGGGCAACTGGCTACCGAACAATGTCATTGGAATCAGCTTATGTGT
CCTCTTTGCCTCACTGTGCAAAGTTCCAAATCTCAAAGTAACCGTCATGC
TTTTTGCCGGACTTTTCGTGTATGATATTTTCTTCGTGTTCTTCTCGGAA
CGGTTCTTTGGCCGAAACGTGATGGTAGAAGTCGCCACCTCGGCTCCTAA
GAACCCTGCTTCAGCAATTGCATCCTTTTTTAATTTACCGTTTACGCCAG
TGAAGCATTTAGCTTTACCAGCCAAACTTGTGTTCCCCGCCGGTGGGAAG
GACTATGCCATATTGGGGCTTGGAGATATCATTCTGCCAGAGATTCTTCT
GACCTACCTTCTTGAAGCGGACTTGTTGCGATCTCCTCGACGAGCCCCAT
GGTACAAGGGTTATTTTCCGAGAGCACTCGTAGCGTACACGTTGGCTCTG
TACGCAAGCTTTTATTGCAATTTTGTCTTTAAGAACGCACAGCCCGCTCT
TCTGTATATAGTTCCCGCTCTTCTAGTGACTACTCTGATATATGCTCGAA
GCAAAGGAGAAGTTTTCGCTCTTTGGACTGGTTTAGCAATTCGACACTCC
TCGGCACAAGTTGAATCAGATTTGAACCTTGACAGTGATGGTAATGCAGT
TGACCCAAAAGATCTTGAGTCGACGGCGCTTGTAGCATGA

Coding sequence (CDS) from alignment at tig00004442_pilon:1094029..1095168+

>Gchil10127.t1 ID=Gchil10127.t1|Name=Gchil10127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00004442_pilon:1094029..1095168+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCCGAGCTTCTTATTCTTCTCACCGATGGAACGACCCTGTGTAT
GGTACTTACCGCCACTCTCACAGCTGCTTACTCTGCGTACAGAGCCAATG
AACCTCTCTTCAAGAGGGGTTCATCCCGAGTGCAAGCTTTGTCACCATCG
CTCTCTGAGCAATTCGTGGATGAAAACAGACGCCTGTTAGAGGGTTCTAC
GGCACTTGCGTTTCCCATCGTCGCCACCGTATCAATCATCTTCTTGTTCT
TTTTTATCAAGTCCTTCGGTTATATACTCACCTTGCTTTCCACGGTTTCC
AGTGTTTTCTCCGTCTCTTTCTTCCTGTGGCCGTTTGCTGAAACCATCAT
CTCTCGAATTCGAGCATTTGGCGCTCAAATCCGCTCTAACACTGTCTTCG
AATCTCTGATTGTCGTGCCGGCTTCGCTGGCCATAATTTCCTACTGGTTG
GTTACGGGCAACTGGCTACCGAACAATGTCATTGGAATCAGCTTATGTGT
CCTCTTTGCCTCACTGTGCAAAGTTCCAAATCTCAAAGTAACCGTCATGC
TTTTTGCCGGACTTTTCGTGTATGATATTTTCTTCGTGTTCTTCTCGGAA
CGGTTCTTTGGCCGAAACGTGATGGTAGAAGTCGCCACCTCGGCTCCTAA
GAACCCTGCTTCAGCAATTGCATCCTTTTTTAATTTACCGTTTACGCCAG
TGAAGCATTTAGCTTTACCAGCCAAACTTGTGTTCCCCGCCGGTGGGAAG
GACTATGCCATATTGGGGCTTGGAGATATCATTCTGCCAGAGATTCTTCT
GACCTACCTTCTTGAAGCGGACTTGTTGCGATCTCCTCGACGAGCCCCAT
GGTACAAGGGTTATTTTCCGAGAGCACTCGTAGCGTACACGTTGGCTCTG
TACGCAAGCTTTTATTGCAATTTTGTCTTTAAGAACGCACAGCCCGCTCT
TCTGTATATAGTTCCCGCTCTTCTAGTGACTACTCTGATATATGCTCGAA
GCAAAGGAGAAGTTTTCGCTCTTTGGACTGGTTTAGCAATTCGACACTCC
TCGGCACAAGTTGAATCAGATTTGAACCTTGACAGTGATGGTAATGCAGT
TGACCCAAAAGATCTTGAGTCGACGGCGCTTGTAGCATGA