Gchil10125.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10125.t1
Unique NameGchil10125.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1090750..1091711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010525116.1
PFAMsHTH_3,MBF1
Max annot lvl35493|Streptophyta
KEGG koko:K03627
GOsGO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue6.97e-30
EggNOG OGsCOG1813@1|root,KOG3398@2759|Eukaryota,37TRQ@33090|Viridiplantae,3GHY7@35493|Streptophyta,3HTQW@3699|Brassicales
DescriptionMultiprotein bridging factor 1
COG categoryK
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10125Gchil10125Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1090750..1091711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10125.t1Gchil10125.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1090750..1091711 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10125.t1.stop1Gchil10125.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1090750..1090752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10125.t1.CDS1Gchil10125.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1090750..1090820 -
Gchil10125.t1.CDS2Gchil10125.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1090906..1090920 -
Gchil10125.t1.CDS3Gchil10125.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1090989..1091031 -
Gchil10125.t1.CDS4Gchil10125.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1091125..1091273 -
Gchil10125.t1.CDS5Gchil10125.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1091362..1091436 -
Gchil10125.t1.CDS6Gchil10125.t1.CDS6Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1091540..1091614 -
Gchil10125.t1.CDS7Gchil10125.t1.CDS7Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1091687..1091711 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10125.t1.exon1Gchil10125.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1090750..1090820 -
Gchil10125.t1.exon2Gchil10125.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1090906..1090920 -
Gchil10125.t1.exon3Gchil10125.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1090989..1091031 -
Gchil10125.t1.exon4Gchil10125.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1091125..1091273 -
Gchil10125.t1.exon5Gchil10125.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1091362..1091436 -
Gchil10125.t1.exon6Gchil10125.t1.exon6Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1091540..1091614 -
Gchil10125.t1.exon7Gchil10125.t1.exon7Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1091687..1091711 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10125.t1.intron1Gchil10125.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1090821..1090905 -
Gchil10125.t1.intron2Gchil10125.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1090921..1090988 -
Gchil10125.t1.intron3Gchil10125.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1091032..1091124 -
Gchil10125.t1.intron4Gchil10125.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1091274..1091361 -
Gchil10125.t1.intron5Gchil10125.t1.intron5Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1091437..1091539 -
Gchil10125.t1.intron6Gchil10125.t1.intron6Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1091615..1091686 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10125.t1.start1Gchil10125.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1091709..1091711 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10125.t1 ID=Gchil10125.t1|Name=Gchil10125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=151bp
MSQQDWDKVVIRPKASSSKKPEAGAGGAPTEKKFAAGSNSKRGDANMSKL
DADTENLSHKRVGLALGKAIQKARMQKKMTQADLAKIVNEKPAVVNQYEN
GKAIPNGQIIAKIERALGAKLPLKILNPIGNVFYPVLSTELRLTTRDKKS
*
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spliced messenger RNA

>Gchil10125.t1 ID=Gchil10125.t1|Name=Gchil10125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00004442_pilon:1090750..1091711- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAACAAGATTGGGATAAAGTCGTGATTCGCCCAAAGGCATCTTC
ATCGAAGAAGCCGGAGGCAGGAGCTGGAGGTGCCCCAACTGAAAAGAAGT
TCGCCGCTGGCTCAAACTCCAAGCGAGGTGACGCGAATATGTCCAAGCTT
GACGCAGATACTGAGAATCTTTCACACAAGAGAGTCGGCCTCGCTCTTGG
AAAAGCCATACAAAAAGCTCGGATGCAGAAGAAAATGACGCAAGCCGATC
TCGCGAAGATTGTTAACGAAAAGCCAGCCGTTGTTAATCAGTATGAAAAC
GGAAAAGCCATTCCTAACGGACAGATCATTGCGAAGATTGAAAGAGCTCT
TGGAGCAAAACTTCCGCTCAAAATCTTGAATCCCATCGGAAATGTGTTCT
ATCCTGTTCTTTCTACGGAGCTTCGGCTGACTACACGAGACAAGAAATCC
TGA
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protein sequence of Gchil10125.t1

>Gchil10125.t1 ID=Gchil10125.t1|Name=Gchil10125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=151bp
MSQQDWDKVVIRPKASSSKKPEAGAGGAPTEKKFAAGSNSKRGDANMSKL
DADTENLSHKRVGLALGKAIQKARMQKKMTQADLAKIVNEKPAVVNQYEN
GKAIPNGQIIAKIERALGAKLPLKILNPIGNVFYPVLSTELRLTTRDKKS
*
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mRNA from alignment at tig00004442_pilon:1090750..1091711-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10125.t1 ID=Gchil10125.t1|Name=Gchil10125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=962bp|location=Sequence derived from alignment at tig00004442_pilon:1090750..1091711- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAACAAGATTGGGATAAAGGTATGAGTTCATGTTCAGCCGACCT
CTTTTTCGTCACATAGCCTCAACTGACATTCGTTTTGCTCTCGGCAGTCG
TGATTCGCCCAAAGGCATCTTCATCGAAGAAGCCGGAGGCAGGAGCTGGA
GGTGCCCCAACTGAAAAGAAGTGTACGTTTACATCATTGCAACCCTGTGA
TTCTACTTTGAGTGCCATCGTATCTCCAATGATTGCTAACTTTATCTGAA
TCTTCATATTTATGCTTCAAAACAGTCGCCGCTGGCTCAAACTCCAAGCG
AGGTGACGCGAATATGTCCAAGCTTGACGCAGATACTGAGAATCTTTCAC
GTACGTACAATAGTTACAGGCTTTCAGTGAGCTGATGACATTAGTGCCTA
GACACCCCTGCTAATAACCTCGTTTCCTTTCCTTGTAGACAAGAGAGTCG
GCCTCGCTCTTGGAAAAGCCATACAAAAAGCTCGGATGCAGAAGAAAATG
ACGCAAGCCGATCTCGCGAAGATTGTTAACGAAAAGCCAGCCGTTGTTAA
TCAGTATGAAAACGGAAAAGCCATTCCTAACGGACAGGTATGTTCACTCT
CCGTCATTTCCAATGTGCCGCGATTGTAGCATTTTATGGTCATCATCTAA
CGAGCATTCAAATTCTCCTCTATTGTGCAGATCATTGCGAAGATTGAAAG
AGCTCTTGGAGCAAAACTTCCGCGTCCAGCGAAGAAATAGAAATTGCACA
TCTCCGTAAGCAGCGAAAAACTTAACTTCGCAGCCTTGAAGTCAAAATCT
TGAATCGTAAGTGTTGTTTCTATTATATACTTGCCGGGGTGCGCTGGAGC
GGCGTCTCCATTTCACTAATGGATCGACTACATCATCATAGCCATCGGAA
ATGTGTTCTATCCTGTTCTTTCTACGGAGCTTCGGCTGACTACACGAGAC
AAGAAATCCTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1090750..1091711-

>Gchil10125.t1 ID=Gchil10125.t1|Name=Gchil10125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00004442_pilon:1090750..1091711- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAACAAGATTGGGATAAAGTCGTGATTCGCCCAAAGGCATCTTC
ATCGAAGAAGCCGGAGGCAGGAGCTGGAGGTGCCCCAACTGAAAAGAAGT
TCGCCGCTGGCTCAAACTCCAAGCGAGGTGACGCGAATATGTCCAAGCTT
GACGCAGATACTGAGAATCTTTCACACAAGAGAGTCGGCCTCGCTCTTGG
AAAAGCCATACAAAAAGCTCGGATGCAGAAGAAAATGACGCAAGCCGATC
TCGCGAAGATTGTTAACGAAAAGCCAGCCGTTGTTAATCAGTATGAAAAC
GGAAAAGCCATTCCTAACGGACAGATCATTGCGAAGATTGAAAGAGCTCT
TGGAGCAAAACTTCCGCTCAAAATCTTGAATCCCATCGGAAATGTGTTCT
ATCCTGTTCTTTCTACGGAGCTTCGGCTGACTACACGAGACAAGAAATCC
TGA
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