Gchil10124.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10124.t1
Unique Name	Gchil10124.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	559

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1088996..1090672 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr43631
Max annot lvl	2836\|Bacillariophyta
Evalue	6.86e-16
EggNOG OGs	290Z0@1\|root,2R7UK@2759\|Eukaryota,2XD90@2836\|Bacillariophyta
Description	Pfam:TPM
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10124	Gchil10124	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1088996..1090672 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10124.t1.start1	Gchil10124.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1088996..1088998 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10124.t1.CDS1	Gchil10124.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1088996..1090672 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10124.t1.exon1	Gchil10124.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1088996..1090672 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10124.t1.stop1	Gchil10124.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1090670..1090672 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10124.t1	Gchil10124.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1088996..1090672 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1088996..1090672+
coding sequence from alignment at tig00004442_pilon:1088996..1090672+

mRNA sequence

>Gchil10124.t1 ID=Gchil10124.t1|Name=Gchil10124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=559bp
MKIYTAFLLVFAVLRIEHAVAVTDTVSPESLPPPWTDSTHICHPVHNVPV
GSSSVCDPSGLLSEHHISNLDRVLTQIYTGTRPYSLIKCGENQHSDSLSA
QAHGFRVAIALVRRMRFDGQTLATRAEHFAETIFSNWQMAENCGASVLLF
VSLEDRRMYIKTGETAVEYLSEHQIDDVYSRMIPKLKKTRTAAALRAGLE
RIGHYIASYKGEHPRAMPTDGEHQQGFGPLFFRNWPSWWDLELSIVSVIF
VVFSIIACCNGVGGIEAARKRREKKKLLRKLDIVRDEYFGSMNEHYAPAT
CPICHDKITLSWEPANVSASEGDSLVVESDSVQRRRSVRTLRCGHSFHDN
CFEDDYLTPGGPAPSCPVCGDPGTGTTTPEPLQETRMRDVSFRLNRLHDQ
YPHILTADVLAKLESEPPNIWPNPMRDSYLKPIQRSQALDEGDEEQTNSS
TPFWTGVGGALAAGGIGALIGSLFGGWGRRDNDSNYSSIGGNDGGQGFWR
RNSGGGHGAGWGNNISSAFSGGGGGGFGSGWGGGGGGHGAGFGGGGGGGG
GGGHGTGW*

spliced messenger RNA

>Gchil10124.t1 ID=Gchil10124.t1|Name=Gchil10124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00004442_pilon:1088996..1090672+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATATACACAGCTTTTCTACTTGTCTTCGCCGTTCTACGCATCGA
GCATGCGGTTGCGGTGACAGACACGGTTTCTCCCGAGTCACTTCCTCCAC
CGTGGACCGATAGTACTCACATATGCCACCCAGTCCATAACGTTCCTGTC
GGATCCAGTTCTGTTTGTGATCCATCTGGTCTGCTAAGCGAGCATCACAT
TTCAAATCTCGACCGAGTTCTGACGCAGATATACACTGGTACTCGCCCAT
ACTCACTTATAAAATGCGGTGAAAACCAGCACTCTGACTCCCTATCTGCA
CAAGCTCATGGATTTCGCGTCGCTATTGCACTTGTGAGACGGATGAGGTT
TGATGGACAAACACTCGCTACGCGAGCGGAGCACTTTGCAGAAACCATCT
TCTCGAATTGGCAGATGGCCGAAAACTGCGGTGCGAGTGTTCTTCTTTTC
GTATCATTGGAAGATCGAAGAATGTACATTAAAACCGGAGAAACCGCAGT
CGAGTACCTCAGTGAACATCAGATCGACGACGTGTACTCCAGAATGATTC
CCAAACTCAAGAAAACGCGAACAGCGGCCGCCCTAAGAGCTGGTTTAGAA
AGAATAGGCCATTATATTGCAAGTTATAAAGGGGAACATCCGCGAGCGAT
GCCAACAGATGGTGAACATCAGCAAGGGTTTGGTCCGCTGTTTTTCAGGA
ATTGGCCATCCTGGTGGGATTTAGAGCTCTCGATTGTCTCGGTGATCTTT
GTCGTCTTCTCCATTATTGCTTGTTGTAATGGGGTTGGCGGCATTGAGGC
TGCCAGAAAGAGGAGGGAGAAGAAGAAACTGTTACGCAAGCTTGACATCG
TCCGTGATGAGTATTTTGGCAGCATGAACGAGCACTACGCACCGGCAACT
TGCCCTATATGTCACGACAAGATAACTCTTTCATGGGAACCCGCTAATGT
TTCTGCGTCTGAGGGTGATTCTCTCGTCGTTGAATCCGATTCAGTGCAGA
GAAGGCGGTCGGTGCGAACTTTGCGATGCGGTCATTCTTTCCACGACAAT
TGCTTTGAGGACGACTATTTGACTCCAGGTGGTCCGGCACCTTCATGCCC
AGTTTGCGGAGACCCGGGAACTGGAACGACCACTCCTGAGCCCTTGCAAG
AAACCCGCATGCGAGACGTTTCCTTTCGTTTGAATCGGTTACATGACCAA
TACCCGCACATCCTGACTGCTGATGTGTTGGCGAAATTGGAGTCTGAACC
ACCAAACATTTGGCCAAATCCGATGAGAGACTCATATCTGAAACCTATTC
AACGTTCTCAAGCTCTTGACGAAGGTGATGAGGAACAAACGAACAGCAGC
ACGCCTTTCTGGACAGGAGTGGGCGGTGCATTGGCTGCAGGCGGCATTGG
AGCTCTCATTGGCTCCCTCTTTGGGGGATGGGGTAGACGTGACAACGATT
CAAACTACTCAAGCATTGGCGGGAATGATGGAGGCCAAGGCTTTTGGAGA
CGTAATTCAGGAGGAGGTCATGGCGCGGGATGGGGAAATAACATATCCAG
CGCATTCTCTGGAGGAGGTGGAGGGGGTTTTGGCTCAGGATGGGGTGGTG
GTGGTGGCGGGCACGGAGCAGGTTTCGGCGGAGGGGGTGGTGGAGGTGGC
GGCGGAGGTCATGGTACCGGATGGTAA

protein sequence of Gchil10124.t1

>Gchil10124.t1 ID=Gchil10124.t1|Name=Gchil10124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=559bp
MKIYTAFLLVFAVLRIEHAVAVTDTVSPESLPPPWTDSTHICHPVHNVPV
GSSSVCDPSGLLSEHHISNLDRVLTQIYTGTRPYSLIKCGENQHSDSLSA
QAHGFRVAIALVRRMRFDGQTLATRAEHFAETIFSNWQMAENCGASVLLF
VSLEDRRMYIKTGETAVEYLSEHQIDDVYSRMIPKLKKTRTAAALRAGLE
RIGHYIASYKGEHPRAMPTDGEHQQGFGPLFFRNWPSWWDLELSIVSVIF
VVFSIIACCNGVGGIEAARKRREKKKLLRKLDIVRDEYFGSMNEHYAPAT
CPICHDKITLSWEPANVSASEGDSLVVESDSVQRRRSVRTLRCGHSFHDN
CFEDDYLTPGGPAPSCPVCGDPGTGTTTPEPLQETRMRDVSFRLNRLHDQ
YPHILTADVLAKLESEPPNIWPNPMRDSYLKPIQRSQALDEGDEEQTNSS
TPFWTGVGGALAAGGIGALIGSLFGGWGRRDNDSNYSSIGGNDGGQGFWR
RNSGGGHGAGWGNNISSAFSGGGGGGFGSGWGGGGGGHGAGFGGGGGGGG
GGGHGTGW*

mRNA from alignment at tig00004442_pilon:1088996..1090672+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10124.t1 ID=Gchil10124.t1|Name=Gchil10124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00004442_pilon:1088996..1090672+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATATACACAGCTTTTCTACTTGTCTTCGCCGTTCTACGCATCGA
GCATGCGGTTGCGGTGACAGACACGGTTTCTCCCGAGTCACTTCCTCCAC
CGTGGACCGATAGTACTCACATATGCCACCCAGTCCATAACGTTCCTGTC
GGATCCAGTTCTGTTTGTGATCCATCTGGTCTGCTAAGCGAGCATCACAT
TTCAAATCTCGACCGAGTTCTGACGCAGATATACACTGGTACTCGCCCAT
ACTCACTTATAAAATGCGGTGAAAACCAGCACTCTGACTCCCTATCTGCA
CAAGCTCATGGATTTCGCGTCGCTATTGCACTTGTGAGACGGATGAGGTT
TGATGGACAAACACTCGCTACGCGAGCGGAGCACTTTGCAGAAACCATCT
TCTCGAATTGGCAGATGGCCGAAAACTGCGGTGCGAGTGTTCTTCTTTTC
GTATCATTGGAAGATCGAAGAATGTACATTAAAACCGGAGAAACCGCAGT
CGAGTACCTCAGTGAACATCAGATCGACGACGTGTACTCCAGAATGATTC
CCAAACTCAAGAAAACGCGAACAGCGGCCGCCCTAAGAGCTGGTTTAGAA
AGAATAGGCCATTATATTGCAAGTTATAAAGGGGAACATCCGCGAGCGAT
GCCAACAGATGGTGAACATCAGCAAGGGTTTGGTCCGCTGTTTTTCAGGA
ATTGGCCATCCTGGTGGGATTTAGAGCTCTCGATTGTCTCGGTGATCTTT
GTCGTCTTCTCCATTATTGCTTGTTGTAATGGGGTTGGCGGCATTGAGGC
TGCCAGAAAGAGGAGGGAGAAGAAGAAACTGTTACGCAAGCTTGACATCG
TCCGTGATGAGTATTTTGGCAGCATGAACGAGCACTACGCACCGGCAACT
TGCCCTATATGTCACGACAAGATAACTCTTTCATGGGAACCCGCTAATGT
TTCTGCGTCTGAGGGTGATTCTCTCGTCGTTGAATCCGATTCAGTGCAGA
GAAGGCGGTCGGTGCGAACTTTGCGATGCGGTCATTCTTTCCACGACAAT
TGCTTTGAGGACGACTATTTGACTCCAGGTGGTCCGGCACCTTCATGCCC
AGTTTGCGGAGACCCGGGAACTGGAACGACCACTCCTGAGCCCTTGCAAG
AAACCCGCATGCGAGACGTTTCCTTTCGTTTGAATCGGTTACATGACCAA
TACCCGCACATCCTGACTGCTGATGTGTTGGCGAAATTGGAGTCTGAACC
ACCAAACATTTGGCCAAATCCGATGAGAGACTCATATCTGAAACCTATTC
AACGTTCTCAAGCTCTTGACGAAGGTGATGAGGAACAAACGAACAGCAGC
ACGCCTTTCTGGACAGGAGTGGGCGGTGCATTGGCTGCAGGCGGCATTGG
AGCTCTCATTGGCTCCCTCTTTGGGGGATGGGGTAGACGTGACAACGATT
CAAACTACTCAAGCATTGGCGGGAATGATGGAGGCCAAGGCTTTTGGAGA
CGTAATTCAGGAGGAGGTCATGGCGCGGGATGGGGAAATAACATATCCAG
CGCATTCTCTGGAGGAGGTGGAGGGGGTTTTGGCTCAGGATGGGGTGGTG
GTGGTGGCGGGCACGGAGCAGGTTTCGGCGGAGGGGGTGGTGGAGGTGGC
GGCGGAGGTCATGGTACCGGATGGTAA

Coding sequence (CDS) from alignment at tig00004442_pilon:1088996..1090672+

>Gchil10124.t1 ID=Gchil10124.t1|Name=Gchil10124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00004442_pilon:1088996..1090672+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGATATACACAGCTTTTCTACTTGTCTTCGCCGTTCTACGCATCGA
GCATGCGGTTGCGGTGACAGACACGGTTTCTCCCGAGTCACTTCCTCCAC
CGTGGACCGATAGTACTCACATATGCCACCCAGTCCATAACGTTCCTGTC
GGATCCAGTTCTGTTTGTGATCCATCTGGTCTGCTAAGCGAGCATCACAT
TTCAAATCTCGACCGAGTTCTGACGCAGATATACACTGGTACTCGCCCAT
ACTCACTTATAAAATGCGGTGAAAACCAGCACTCTGACTCCCTATCTGCA
CAAGCTCATGGATTTCGCGTCGCTATTGCACTTGTGAGACGGATGAGGTT
TGATGGACAAACACTCGCTACGCGAGCGGAGCACTTTGCAGAAACCATCT
TCTCGAATTGGCAGATGGCCGAAAACTGCGGTGCGAGTGTTCTTCTTTTC
GTATCATTGGAAGATCGAAGAATGTACATTAAAACCGGAGAAACCGCAGT
CGAGTACCTCAGTGAACATCAGATCGACGACGTGTACTCCAGAATGATTC
CCAAACTCAAGAAAACGCGAACAGCGGCCGCCCTAAGAGCTGGTTTAGAA
AGAATAGGCCATTATATTGCAAGTTATAAAGGGGAACATCCGCGAGCGAT
GCCAACAGATGGTGAACATCAGCAAGGGTTTGGTCCGCTGTTTTTCAGGA
ATTGGCCATCCTGGTGGGATTTAGAGCTCTCGATTGTCTCGGTGATCTTT
GTCGTCTTCTCCATTATTGCTTGTTGTAATGGGGTTGGCGGCATTGAGGC
TGCCAGAAAGAGGAGGGAGAAGAAGAAACTGTTACGCAAGCTTGACATCG
TCCGTGATGAGTATTTTGGCAGCATGAACGAGCACTACGCACCGGCAACT
TGCCCTATATGTCACGACAAGATAACTCTTTCATGGGAACCCGCTAATGT
TTCTGCGTCTGAGGGTGATTCTCTCGTCGTTGAATCCGATTCAGTGCAGA
GAAGGCGGTCGGTGCGAACTTTGCGATGCGGTCATTCTTTCCACGACAAT
TGCTTTGAGGACGACTATTTGACTCCAGGTGGTCCGGCACCTTCATGCCC
AGTTTGCGGAGACCCGGGAACTGGAACGACCACTCCTGAGCCCTTGCAAG
AAACCCGCATGCGAGACGTTTCCTTTCGTTTGAATCGGTTACATGACCAA
TACCCGCACATCCTGACTGCTGATGTGTTGGCGAAATTGGAGTCTGAACC
ACCAAACATTTGGCCAAATCCGATGAGAGACTCATATCTGAAACCTATTC
AACGTTCTCAAGCTCTTGACGAAGGTGATGAGGAACAAACGAACAGCAGC
ACGCCTTTCTGGACAGGAGTGGGCGGTGCATTGGCTGCAGGCGGCATTGG
AGCTCTCATTGGCTCCCTCTTTGGGGGATGGGGTAGACGTGACAACGATT
CAAACTACTCAAGCATTGGCGGGAATGATGGAGGCCAAGGCTTTTGGAGA
CGTAATTCAGGAGGAGGTCATGGCGCGGGATGGGGAAATAACATATCCAG
CGCATTCTCTGGAGGAGGTGGAGGGGGTTTTGGCTCAGGATGGGGTGGTG
GTGGTGGCGGGCACGGAGCAGGTTTCGGCGGAGGGGGTGGTGGAGGTGGC
GGCGGAGGTCATGGTACCGGATGGTAA