Gchil10120.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10120.t1
Unique NameGchil10120.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1080642..1081541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10120Gchil10120Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1080642..1081541 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10120.t1.start1Gchil10120.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1080642..1080644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10120.t1.CDS1Gchil10120.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1080642..1081541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10120.t1.exon1Gchil10120.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1080642..1081541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10120.t1.stop1Gchil10120.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1081539..1081541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10120.t1Gchil10120.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1080642..1081541 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10120.t1 ID=Gchil10120.t1|Name=Gchil10120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MTSSLGLPIENFLSSLDWLSNSHSSSPSAQNATNSCNACTSLSANCCVAD
SDLHQSIITGVARFHLACHQQLCFAPVSNETDVLSDISAVIGMEQDNIRI
VLRTCESAGNLCLTIDETKMIKPVRTSQQQHMHMIHFTFPSVILVFQSRT
AVSADSSEASTANAREQKKLDSLKEAVNKLREKDGTSATEQLSEQNQSLE
DKEGVDLEQVFTDVLSKGAKMVMPPCFPYVTGAGGGEDAGNSSASHIAFV
QACMRQETAISDALKQTEGWVHFARRKRMSVEHSPTKNGTKARRTSELL*
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spliced messenger RNA

>Gchil10120.t1 ID=Gchil10120.t1|Name=Gchil10120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004442_pilon:1080642..1081541+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCCTCATTAGGACTGCCCATCGAAAATTTCCTTTCATCCCTGGA
CTGGCTCTCAAATTCGCATTCTTCCTCTCCTTCTGCGCAAAATGCAACAA
ACAGTTGCAACGCATGTACCAGTCTCAGTGCAAACTGCTGCGTGGCTGAC
TCAGATCTTCATCAGAGCATCATAACCGGTGTTGCACGCTTTCACCTCGC
ATGTCACCAACAGCTGTGTTTCGCTCCAGTTTCAAATGAAACGGATGTTC
TTTCCGACATTTCAGCCGTGATTGGAATGGAGCAAGATAACATTCGCATA
GTGCTACGAACATGCGAATCTGCTGGTAATTTGTGTTTGACGATCGATGA
GACGAAGATGATCAAACCTGTACGGACAAGTCAGCAACAACACATGCATA
TGATTCATTTTACGTTTCCATCTGTCATTCTGGTGTTTCAAAGCCGAACG
GCCGTCTCAGCTGATAGCAGTGAGGCATCCACTGCAAATGCTCGGGAGCA
GAAAAAGTTAGACAGTCTTAAGGAGGCTGTCAATAAGCTTCGAGAGAAGG
ACGGTACATCAGCGACGGAGCAGTTGTCAGAGCAAAACCAAAGTCTAGAA
GACAAGGAAGGAGTGGATTTGGAACAAGTGTTTACAGATGTTCTGTCGAA
AGGAGCTAAGATGGTTATGCCTCCGTGCTTCCCGTACGTTACTGGCGCTG
GAGGGGGCGAAGACGCCGGAAACAGTAGCGCAAGCCATATTGCGTTTGTC
CAAGCTTGCATGCGACAGGAAACGGCAATCAGCGATGCTCTGAAGCAAAC
AGAAGGCTGGGTACACTTTGCCAGACGAAAGCGAATGTCTGTGGAGCACA
GCCCCACGAAGAATGGAACGAAGGCACGAAGAACGAGTGAGCTTCTATGA
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protein sequence of Gchil10120.t1

>Gchil10120.t1 ID=Gchil10120.t1|Name=Gchil10120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MTSSLGLPIENFLSSLDWLSNSHSSSPSAQNATNSCNACTSLSANCCVAD
SDLHQSIITGVARFHLACHQQLCFAPVSNETDVLSDISAVIGMEQDNIRI
VLRTCESAGNLCLTIDETKMIKPVRTSQQQHMHMIHFTFPSVILVFQSRT
AVSADSSEASTANAREQKKLDSLKEAVNKLREKDGTSATEQLSEQNQSLE
DKEGVDLEQVFTDVLSKGAKMVMPPCFPYVTGAGGGEDAGNSSASHIAFV
QACMRQETAISDALKQTEGWVHFARRKRMSVEHSPTKNGTKARRTSELL*
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mRNA from alignment at tig00004442_pilon:1080642..1081541+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10120.t1 ID=Gchil10120.t1|Name=Gchil10120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004442_pilon:1080642..1081541+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCCTCATTAGGACTGCCCATCGAAAATTTCCTTTCATCCCTGGA
CTGGCTCTCAAATTCGCATTCTTCCTCTCCTTCTGCGCAAAATGCAACAA
ACAGTTGCAACGCATGTACCAGTCTCAGTGCAAACTGCTGCGTGGCTGAC
TCAGATCTTCATCAGAGCATCATAACCGGTGTTGCACGCTTTCACCTCGC
ATGTCACCAACAGCTGTGTTTCGCTCCAGTTTCAAATGAAACGGATGTTC
TTTCCGACATTTCAGCCGTGATTGGAATGGAGCAAGATAACATTCGCATA
GTGCTACGAACATGCGAATCTGCTGGTAATTTGTGTTTGACGATCGATGA
GACGAAGATGATCAAACCTGTACGGACAAGTCAGCAACAACACATGCATA
TGATTCATTTTACGTTTCCATCTGTCATTCTGGTGTTTCAAAGCCGAACG
GCCGTCTCAGCTGATAGCAGTGAGGCATCCACTGCAAATGCTCGGGAGCA
GAAAAAGTTAGACAGTCTTAAGGAGGCTGTCAATAAGCTTCGAGAGAAGG
ACGGTACATCAGCGACGGAGCAGTTGTCAGAGCAAAACCAAAGTCTAGAA
GACAAGGAAGGAGTGGATTTGGAACAAGTGTTTACAGATGTTCTGTCGAA
AGGAGCTAAGATGGTTATGCCTCCGTGCTTCCCGTACGTTACTGGCGCTG
GAGGGGGCGAAGACGCCGGAAACAGTAGCGCAAGCCATATTGCGTTTGTC
CAAGCTTGCATGCGACAGGAAACGGCAATCAGCGATGCTCTGAAGCAAAC
AGAAGGCTGGGTACACTTTGCCAGACGAAAGCGAATGTCTGTGGAGCACA
GCCCCACGAAGAATGGAACGAAGGCACGAAGAACGAGTGAGCTTCTATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1080642..1081541+

>Gchil10120.t1 ID=Gchil10120.t1|Name=Gchil10120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00004442_pilon:1080642..1081541+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCCTCATTAGGACTGCCCATCGAAAATTTCCTTTCATCCCTGGA
CTGGCTCTCAAATTCGCATTCTTCCTCTCCTTCTGCGCAAAATGCAACAA
ACAGTTGCAACGCATGTACCAGTCTCAGTGCAAACTGCTGCGTGGCTGAC
TCAGATCTTCATCAGAGCATCATAACCGGTGTTGCACGCTTTCACCTCGC
ATGTCACCAACAGCTGTGTTTCGCTCCAGTTTCAAATGAAACGGATGTTC
TTTCCGACATTTCAGCCGTGATTGGAATGGAGCAAGATAACATTCGCATA
GTGCTACGAACATGCGAATCTGCTGGTAATTTGTGTTTGACGATCGATGA
GACGAAGATGATCAAACCTGTACGGACAAGTCAGCAACAACACATGCATA
TGATTCATTTTACGTTTCCATCTGTCATTCTGGTGTTTCAAAGCCGAACG
GCCGTCTCAGCTGATAGCAGTGAGGCATCCACTGCAAATGCTCGGGAGCA
GAAAAAGTTAGACAGTCTTAAGGAGGCTGTCAATAAGCTTCGAGAGAAGG
ACGGTACATCAGCGACGGAGCAGTTGTCAGAGCAAAACCAAAGTCTAGAA
GACAAGGAAGGAGTGGATTTGGAACAAGTGTTTACAGATGTTCTGTCGAA
AGGAGCTAAGATGGTTATGCCTCCGTGCTTCCCGTACGTTACTGGCGCTG
GAGGGGGCGAAGACGCCGGAAACAGTAGCGCAAGCCATATTGCGTTTGTC
CAAGCTTGCATGCGACAGGAAACGGCAATCAGCGATGCTCTGAAGCAAAC
AGAAGGCTGGGTACACTTTGCCAGACGAAAGCGAATGTCTGTGGAGCACA
GCCCCACGAAGAATGGAACGAAGGCACGAAGAACGAGTGAGCTTCTATGA
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