Gchil10118.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10118.t1
Unique NameGchil10118.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length593
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:1027627..1030167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10118Gchil10118Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 1027627..1030167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10118.t1Gchil10118.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 1027627..1030167 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10118.t1.stop1Gchil10118.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 1027627..1027629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10118.t1.CDS1Gchil10118.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1027627..1027651 -
Gchil10118.t1.CDS2Gchil10118.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 1028414..1030167 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10118.t1.exon1Gchil10118.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1027627..1027651 -
Gchil10118.t1.exon2Gchil10118.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 1028414..1030167 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10118.t1.intron1Gchil10118.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 1027652..1028413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10118.t1.start1Gchil10118.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 1030165..1030167 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10118.t1 ID=Gchil10118.t1|Name=Gchil10118.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=593bp
MHPTHNQPPHSPHPLPPSLAHSNHQLLHPKLLHHSQSLSSHSAVLPLPHL
PWAHSKPLTSVPPPPPPPPPPPPPPPPPPLPLPPLNPLPLPPQPTSETPP
NLIESSTNTNVTNTTTTSQNANFALLRFLAVYNLPLSISSSHHFRQLFHL
FQDSPNIPDLNFLRTTVLKAHVQSVHAKVSSALLNTDAIVLKVENGPMGH
RFIVCEYFHPPLQRCTVLLDIVTEEEVWPPSAPAPHTPSLPPPHPSPASG
YANGCVARRYGGRKSEHHKAVFERLILRISATVDRWKIRSKLLSIVLSEP
IFSGDQVLDLYHMLPQTSGSPMELADRYKASRAQHHLNGGAELSYDEAHC
DNAPLSMPRERLPIISCVIRTLTTILEQVVSHDDLIERRFIQPMSRAMHK
VLSDRQFCLSEAAGAWWSTRLHLPMRDSTLWDLSSFLAYFSDHIETVRTV
INRDSDNQAYDFLFVLKDDVVYLYSMVSIFVDAVKSLCYDHMASHSSPAN
GFANGSCTSMGEHTPTLSFTESLSAGIPALRMVLNKLEELPQPVSEEVRA
LKKLAMESLTLHLLCMEQQDVFLCSTILDPRYKQRDGRRICL*
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spliced messenger RNA

>Gchil10118.t1 ID=Gchil10118.t1|Name=Gchil10118.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00004442_pilon:1027627..1030167- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCCACCCACAACCAGCCCCCGCATTCTCCACATCCGCTTCCGCC
GTCCCTCGCCCACTCCAACCACCAGCTGCTTCACCCCAAGCTGCTTCATC
ACTCCCAGTCACTTTCCTCCCATTCTGCTGTGCTCCCCCTGCCTCACCTG
CCTTGGGCCCACTCCAAGCCGCTCACCTCAGTGCCACCGCCACCACCACC
ACCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCTGCCGCTGCCGC
CTCTCAATCCGCTCCCGCTTCCGCCCCAGCCCACCTCTGAAACGCCCCCA
AACCTCATCGAGTCCTCCACCAATACCAATGTCACCAACACCACAACCAC
CTCTCAGAACGCCAATTTTGCGCTGCTCCGCTTTCTGGCCGTCTACAACC
TCCCCCTCTCCATATCCTCCTCCCACCACTTTCGGCAGCTGTTCCACCTC
TTTCAGGACAGTCCCAACATTCCGGATCTCAATTTCTTGCGAACCACCGT
CCTCAAGGCGCATGTTCAGAGCGTTCATGCCAAGGTCAGCTCCGCCCTGC
TCAACACTGATGCTATCGTGCTCAAGGTGGAGAACGGTCCCATGGGCCAC
CGCTTCATCGTATGCGAATACTTCCACCCCCCGCTGCAGAGGTGCACTGT
GTTGCTCGACATTGTCACTGAAGAGGAGGTCTGGCCTCCCTCAGCACCCG
CCCCGCACACGCCCTCGCTACCGCCTCCTCATCCCTCGCCCGCCAGCGGC
TACGCCAATGGATGCGTTGCCCGACGCTACGGCGGCCGAAAGTCAGAGCA
CCACAAGGCTGTGTTTGAGCGTTTAATACTTCGCATCTCGGCCACCGTCG
ATCGCTGGAAAATTCGCAGCAAGCTGTTGTCCATTGTGCTCTCTGAACCC
ATCTTCTCCGGCGACCAAGTGCTCGACCTCTATCACATGCTGCCCCAGAC
GTCAGGCAGTCCCATGGAGCTTGCCGATCGGTACAAGGCCTCCCGAGCGC
AGCACCATCTCAACGGCGGCGCTGAGCTCAGCTACGACGAAGCACACTGT
GACAACGCGCCTCTTTCCATGCCGCGCGAACGCCTTCCCATCATCAGCTG
CGTGATTCGCACCCTCACAACCATTCTCGAGCAGGTTGTCTCGCACGATG
ATCTCATAGAGCGTCGGTTTATCCAACCGATGAGCCGTGCCATGCACAAG
GTTCTCTCGGACCGCCAGTTTTGTCTCTCAGAGGCCGCTGGCGCATGGTG
GTCCACACGTCTGCATCTGCCGATGCGCGATTCTACGCTGTGGGATCTGA
GCTCGTTTCTTGCCTACTTTTCGGACCACATTGAGACTGTGAGGACCGTG
ATCAACCGAGACTCTGACAACCAAGCGTACGATTTCCTCTTTGTGCTTAA
AGACGATGTGGTGTACCTGTATAGCATGGTTAGTATATTTGTGGATGCTG
TAAAGAGCCTCTGCTATGACCACATGGCAAGTCACAGCAGCCCTGCAAAT
GGATTTGCAAATGGAAGCTGTACCAGTATGGGAGAGCATACTCCTACTCT
TTCGTTCACAGAGAGCTTATCAGCTGGAATCCCTGCGCTGCGGATGGTGC
TCAACAAGCTGGAGGAGCTACCCCAGCCCGTGAGCGAAGAAGTACGCGCG
CTGAAAAAGTTGGCAATGGAGAGCCTAACACTGCATCTCCTCTGCATGGA
ACAACAGGATGTATTTTTGTGCTCCACAATACTAGACCCCCGCTACAAGC
AGAGAGATGGCAGGCGCATTTGCCTCTGA
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protein sequence of Gchil10118.t1

>Gchil10118.t1 ID=Gchil10118.t1|Name=Gchil10118.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=593bp
MHPTHNQPPHSPHPLPPSLAHSNHQLLHPKLLHHSQSLSSHSAVLPLPHL
PWAHSKPLTSVPPPPPPPPPPPPPPPPPPLPLPPLNPLPLPPQPTSETPP
NLIESSTNTNVTNTTTTSQNANFALLRFLAVYNLPLSISSSHHFRQLFHL
FQDSPNIPDLNFLRTTVLKAHVQSVHAKVSSALLNTDAIVLKVENGPMGH
RFIVCEYFHPPLQRCTVLLDIVTEEEVWPPSAPAPHTPSLPPPHPSPASG
YANGCVARRYGGRKSEHHKAVFERLILRISATVDRWKIRSKLLSIVLSEP
IFSGDQVLDLYHMLPQTSGSPMELADRYKASRAQHHLNGGAELSYDEAHC
DNAPLSMPRERLPIISCVIRTLTTILEQVVSHDDLIERRFIQPMSRAMHK
VLSDRQFCLSEAAGAWWSTRLHLPMRDSTLWDLSSFLAYFSDHIETVRTV
INRDSDNQAYDFLFVLKDDVVYLYSMVSIFVDAVKSLCYDHMASHSSPAN
GFANGSCTSMGEHTPTLSFTESLSAGIPALRMVLNKLEELPQPVSEEVRA
LKKLAMESLTLHLLCMEQQDVFLCSTILDPRYKQRDGRRICL*
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mRNA from alignment at tig00004442_pilon:1027627..1030167-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10118.t1 ID=Gchil10118.t1|Name=Gchil10118.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2541bp|location=Sequence derived from alignment at tig00004442_pilon:1027627..1030167- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCCCACCCACAACCAGCCCCCGCATTCTCCACATCCGCTTCCGCC
GTCCCTCGCCCACTCCAACCACCAGCTGCTTCACCCCAAGCTGCTTCATC
ACTCCCAGTCACTTTCCTCCCATTCTGCTGTGCTCCCCCTGCCTCACCTG
CCTTGGGCCCACTCCAAGCCGCTCACCTCAGTGCCACCGCCACCACCACC
ACCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCTGCCGCTGCCGC
CTCTCAATCCGCTCCCGCTTCCGCCCCAGCCCACCTCTGAAACGCCCCCA
AACCTCATCGAGTCCTCCACCAATACCAATGTCACCAACACCACAACCAC
CTCTCAGAACGCCAATTTTGCGCTGCTCCGCTTTCTGGCCGTCTACAACC
TCCCCCTCTCCATATCCTCCTCCCACCACTTTCGGCAGCTGTTCCACCTC
TTTCAGGACAGTCCCAACATTCCGGATCTCAATTTCTTGCGAACCACCGT
CCTCAAGGCGCATGTTCAGAGCGTTCATGCCAAGGTCAGCTCCGCCCTGC
TCAACACTGATGCTATCGTGCTCAAGGTGGAGAACGGTCCCATGGGCCAC
CGCTTCATCGTATGCGAATACTTCCACCCCCCGCTGCAGAGGTGCACTGT
GTTGCTCGACATTGTCACTGAAGAGGAGGTCTGGCCTCCCTCAGCACCCG
CCCCGCACACGCCCTCGCTACCGCCTCCTCATCCCTCGCCCGCCAGCGGC
TACGCCAATGGATGCGTTGCCCGACGCTACGGCGGCCGAAAGTCAGAGCA
CCACAAGGCTGTGTTTGAGCGTTTAATACTTCGCATCTCGGCCACCGTCG
ATCGCTGGAAAATTCGCAGCAAGCTGTTGTCCATTGTGCTCTCTGAACCC
ATCTTCTCCGGCGACCAAGTGCTCGACCTCTATCACATGCTGCCCCAGAC
GTCAGGCAGTCCCATGGAGCTTGCCGATCGGTACAAGGCCTCCCGAGCGC
AGCACCATCTCAACGGCGGCGCTGAGCTCAGCTACGACGAAGCACACTGT
GACAACGCGCCTCTTTCCATGCCGCGCGAACGCCTTCCCATCATCAGCTG
CGTGATTCGCACCCTCACAACCATTCTCGAGCAGGTTGTCTCGCACGATG
ATCTCATAGAGCGTCGGTTTATCCAACCGATGAGCCGTGCCATGCACAAG
GTTCTCTCGGACCGCCAGTTTTGTCTCTCAGAGGCCGCTGGCGCATGGTG
GTCCACACGTCTGCATCTGCCGATGCGCGATTCTACGCTGTGGGATCTGA
GCTCGTTTCTTGCCTACTTTTCGGACCACATTGAGACTGTGAGGACCGTG
ATCAACCGAGACTCTGACAACCAAGCGTACGATTTCCTCTTTGTGCTTAA
AGACGATGTGGTGTACCTGTATAGCATGGTTAGTATATTTGTGGATGCTG
TAAAGAGCCTCTGCTATGACCACATGGCAAGTCACAGCAGCCCTGCAAAT
GGATTTGCAAATGGAAGCTGTACCAGTATGGGAGAGCATACTCCTACTCT
TTCGTTCACAGAGAGCTTATCAGCTGGAATCCCTGCGCTGCGGATGGTGC
TCAACAAGCTGGAGGAGCTACCCCAGCCCGTGAGCGAAGAAGTACGCGCG
CTGAAAAAGTTGGCAATGGAGAGCCTAACACTGCATCTCCTCTGCATGGA
ACAACAGGATGTATTTTTGTGCTCCACAATACTAGACCCCCGCTACAAGC
AGAGGTACTTTTCGTCCAAGGATGTGGCGCGCACCGCAGAAAGACTGGTT
CTTGATGCTTGTGAAGACGAACGACGCAGAAGTGACAGTCAAAAGAACGT
CAAGAACGCAGATGGTTTATTGAATGGCTGCGTGGGTTCTGAACCCACTT
TCGAGCACTACATGACGTCCATGATTCCGGGGTCTACGAGCAGTTGCTCG
TTAACGCAGTATCTATCAGATCAACAGAGTGAAAAGTGGCGAGGGGAGGA
GTACTGGCGAGAAAACCAGCAAAGATGGCCTGTACTTGCGCGTGTTGCAG
GGCGATATTGCCTGCTGGCAGGCGTGTGTGATTCTGAAGATGTGCGAATA
GCTCTTGAGCGCGAGAGTAATGTGAGGGGGGAGGGAAGCATAACTGGAAA
GGAGGAACAAACTAACGAGAGGTTGAACATGTTGTTTCTGCGAAGGACAT
ACACTACCCGAGAGTAAATGAAGAAACTGTTGACTGTTATATGGTGATAT
CGATGACTGATTGCCAGTAATCAGGAATATGTGTTGGCGGTAGGGAAGGT
GAAAGTGGAAGGGTTGAGAGCGGAATGGGCGGCGCATACACCGGCGAATC
CTTGCCGCAAATGGGGGCAAAGGGTTGGGGCTATGTCAAAGTCAAGGCCC
AGTGTTGTTTGTATTAATGGTTGGCGAGGCGGTCATGCAACGGTGCTGCG
CCCAGTAAAGCGAGAAATATGGAGAGAAAAGTCAAATGTGAATTTGTTCT
TTTTTTTGTGTGTCAGAGATGGCAGGCGCATTTGCCTCTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:1027627..1030167-

>Gchil10118.t1 ID=Gchil10118.t1|Name=Gchil10118.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00004442_pilon:1027627..1030167- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCCCACCCACAACCAGCCCCCGCATTCTCCACATCCGCTTCCGCC
GTCCCTCGCCCACTCCAACCACCAGCTGCTTCACCCCAAGCTGCTTCATC
ACTCCCAGTCACTTTCCTCCCATTCTGCTGTGCTCCCCCTGCCTCACCTG
CCTTGGGCCCACTCCAAGCCGCTCACCTCAGTGCCACCGCCACCACCACC
ACCGCCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCGCTGCCGCTGCCGC
CTCTCAATCCGCTCCCGCTTCCGCCCCAGCCCACCTCTGAAACGCCCCCA
AACCTCATCGAGTCCTCCACCAATACCAATGTCACCAACACCACAACCAC
CTCTCAGAACGCCAATTTTGCGCTGCTCCGCTTTCTGGCCGTCTACAACC
TCCCCCTCTCCATATCCTCCTCCCACCACTTTCGGCAGCTGTTCCACCTC
TTTCAGGACAGTCCCAACATTCCGGATCTCAATTTCTTGCGAACCACCGT
CCTCAAGGCGCATGTTCAGAGCGTTCATGCCAAGGTCAGCTCCGCCCTGC
TCAACACTGATGCTATCGTGCTCAAGGTGGAGAACGGTCCCATGGGCCAC
CGCTTCATCGTATGCGAATACTTCCACCCCCCGCTGCAGAGGTGCACTGT
GTTGCTCGACATTGTCACTGAAGAGGAGGTCTGGCCTCCCTCAGCACCCG
CCCCGCACACGCCCTCGCTACCGCCTCCTCATCCCTCGCCCGCCAGCGGC
TACGCCAATGGATGCGTTGCCCGACGCTACGGCGGCCGAAAGTCAGAGCA
CCACAAGGCTGTGTTTGAGCGTTTAATACTTCGCATCTCGGCCACCGTCG
ATCGCTGGAAAATTCGCAGCAAGCTGTTGTCCATTGTGCTCTCTGAACCC
ATCTTCTCCGGCGACCAAGTGCTCGACCTCTATCACATGCTGCCCCAGAC
GTCAGGCAGTCCCATGGAGCTTGCCGATCGGTACAAGGCCTCCCGAGCGC
AGCACCATCTCAACGGCGGCGCTGAGCTCAGCTACGACGAAGCACACTGT
GACAACGCGCCTCTTTCCATGCCGCGCGAACGCCTTCCCATCATCAGCTG
CGTGATTCGCACCCTCACAACCATTCTCGAGCAGGTTGTCTCGCACGATG
ATCTCATAGAGCGTCGGTTTATCCAACCGATGAGCCGTGCCATGCACAAG
GTTCTCTCGGACCGCCAGTTTTGTCTCTCAGAGGCCGCTGGCGCATGGTG
GTCCACACGTCTGCATCTGCCGATGCGCGATTCTACGCTGTGGGATCTGA
GCTCGTTTCTTGCCTACTTTTCGGACCACATTGAGACTGTGAGGACCGTG
ATCAACCGAGACTCTGACAACCAAGCGTACGATTTCCTCTTTGTGCTTAA
AGACGATGTGGTGTACCTGTATAGCATGGTTAGTATATTTGTGGATGCTG
TAAAGAGCCTCTGCTATGACCACATGGCAAGTCACAGCAGCCCTGCAAAT
GGATTTGCAAATGGAAGCTGTACCAGTATGGGAGAGCATACTCCTACTCT
TTCGTTCACAGAGAGCTTATCAGCTGGAATCCCTGCGCTGCGGATGGTGC
TCAACAAGCTGGAGGAGCTACCCCAGCCCGTGAGCGAAGAAGTACGCGCG
CTGAAAAAGTTGGCAATGGAGAGCCTAACACTGCATCTCCTCTGCATGGA
ACAACAGGATGTATTTTTGTGCTCCACAATACTAGACCCCCGCTACAAGC
AGAGAGATGGCAGGCGCATTTGCCTCTGA
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