Gchil10116.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10116.t1
Unique NameGchil10116.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:955798..957348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4529.ORUFI09G10710.1
PFAMsRubis-subs-bind,SET
Max annot lvl35493|Streptophyta
KEGG rclassRC01974
KEGG koko:K00592
KEGG ReactionR05179
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018026,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue7.06e-49
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,37I7T@33090|Viridiplantae,3G7DF@35493|Streptophyta,3KMSE@4447|Liliopsida,3I41X@38820|Poales
EC2.1.1.127,2.1.1.259
DescriptionRubisco LSMT substrate-binding
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10116Gchil10116Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 955798..957348 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10116.t1.stop1Gchil10116.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 955798..955800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10116.t1.CDS1Gchil10116.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 955798..957348 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10116.t1.exon1Gchil10116.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 955798..957348 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10116.t1.start1Gchil10116.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 957346..957348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10116.t1Gchil10116.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 955798..957348 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10116.t1 ID=Gchil10116.t1|Name=Gchil10116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=517bp
MSAFVSLITLDPTGGGWNVRRSPFRSSHTGRSPCRAQRIKKPVTYQRHLL
SMEAGGIDECISWLTANSGKVNNVLNFSRMDTRSNRGVCISTGSKVLERT
ELVSLPEGTYIGVKEAKKLLDEAYPGLSSCGVVGEAGDFLALALLLERSK
GSDSFFAPFLKTFPEQNNLDCLPVWNNEEHEMLRGSAVHTDVMNWLENTK
EEWAALDGRIFQKGRHAFPEEHFSLKAYRWALCLTSSRGLYVSQSEPTVL
APILNLFSPVKPDSTQTARLEINGGVFFAKKKLTLKANRDMNDREFVTVS
YRRSMRNAELAFAKGLTIDDSRYNSFFLSFQISSLDRFYDDKRDVLEASD
VETNPKFEIVGGSKSGEYEAPDDMDSFLRLLCLTGADAFLLEGVFRGEVW
DFMALPVSADNEMAMCELVINACADLLDEYSDDLKGMETAKMSERQKMAR
QIIEGEKEILQDVQRAYQRRLDSLDGLEYYAERRLKMLDLLRPIDENEIV
DSESGGRVARAFDENY*
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spliced messenger RNA

>Gchil10116.t1 ID=Gchil10116.t1|Name=Gchil10116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00004442_pilon:955798..957348- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCTTTGTATCTCTCATAACGCTGGATCCGACCGGAGGAGGGTG
GAATGTGAGGCGTTCACCTTTTCGTTCTTCGCATACAGGCCGTTCTCCAT
GTAGGGCACAACGCATTAAGAAGCCAGTGACATATCAACGGCATCTCTTG
TCCATGGAGGCGGGCGGAATTGACGAGTGCATTTCATGGCTTACCGCAAA
TTCTGGAAAAGTCAACAATGTGCTGAACTTCTCACGTATGGACACACGCT
CGAATAGAGGAGTCTGCATATCGACTGGAAGCAAAGTGCTAGAAAGAACG
GAACTGGTCAGTCTTCCAGAAGGAACTTATATCGGCGTGAAAGAAGCGAA
GAAGCTCCTCGATGAAGCGTATCCGGGGCTTTCTTCTTGTGGTGTTGTCG
GAGAAGCAGGGGACTTCCTAGCATTAGCTCTGCTGCTCGAGAGAAGCAAA
GGTTCAGACTCATTCTTTGCGCCGTTCTTGAAAACGTTTCCTGAACAGAA
CAATTTAGATTGTCTACCTGTGTGGAACAATGAAGAGCATGAGATGCTTC
GCGGTTCTGCAGTTCATACGGATGTGATGAACTGGTTGGAGAACACAAAA
GAAGAGTGGGCAGCTCTTGATGGAAGAATTTTTCAGAAGGGTAGGCATGC
ATTCCCTGAAGAACATTTCTCTTTAAAGGCTTACCGATGGGCATTGTGTT
TAACCTCTTCTCGGGGCTTGTATGTCAGTCAGTCAGAACCCACGGTACTT
GCACCAATTCTAAACCTGTTTTCGCCCGTCAAGCCAGATTCTACTCAAAC
TGCTAGACTAGAAATCAATGGAGGCGTGTTTTTTGCGAAGAAAAAGCTTA
CCTTGAAAGCGAACCGAGACATGAATGATCGAGAATTTGTCACCGTGAGC
TACCGAAGAAGCATGAGAAACGCTGAACTCGCTTTTGCAAAAGGGCTGAC
GATAGACGATTCACGCTATAATTCTTTCTTCCTTTCATTCCAAATATCCT
CTCTAGACCGTTTCTACGATGACAAACGGGACGTCCTGGAGGCATCTGAT
GTTGAGACAAATCCGAAGTTTGAGATTGTTGGTGGAAGTAAATCGGGCGA
ATATGAAGCGCCAGATGACATGGACTCATTTCTTCGTCTACTTTGCCTAA
CTGGCGCGGACGCCTTTCTTCTGGAAGGAGTGTTTCGAGGAGAAGTATGG
GACTTCATGGCGTTACCGGTGAGTGCCGACAACGAGATGGCTATGTGTGA
ATTGGTTATCAATGCCTGCGCAGATTTGCTTGATGAATACTCTGACGATT
TGAAGGGAATGGAAACAGCTAAAATGTCGGAAAGGCAAAAAATGGCTAGA
CAAATTATTGAAGGAGAGAAAGAAATTCTGCAGGATGTGCAACGAGCGTA
TCAACGAAGATTAGATTCTCTCGATGGTTTAGAGTATTATGCTGAACGGC
GATTGAAAATGCTAGACTTGCTTCGACCCATTGACGAGAACGAAATCGTT
GATTCTGAGAGTGGGGGTAGAGTGGCTCGCGCTTTTGATGAGAACTACTG
A
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protein sequence of Gchil10116.t1

>Gchil10116.t1 ID=Gchil10116.t1|Name=Gchil10116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=517bp
MSAFVSLITLDPTGGGWNVRRSPFRSSHTGRSPCRAQRIKKPVTYQRHLL
SMEAGGIDECISWLTANSGKVNNVLNFSRMDTRSNRGVCISTGSKVLERT
ELVSLPEGTYIGVKEAKKLLDEAYPGLSSCGVVGEAGDFLALALLLERSK
GSDSFFAPFLKTFPEQNNLDCLPVWNNEEHEMLRGSAVHTDVMNWLENTK
EEWAALDGRIFQKGRHAFPEEHFSLKAYRWALCLTSSRGLYVSQSEPTVL
APILNLFSPVKPDSTQTARLEINGGVFFAKKKLTLKANRDMNDREFVTVS
YRRSMRNAELAFAKGLTIDDSRYNSFFLSFQISSLDRFYDDKRDVLEASD
VETNPKFEIVGGSKSGEYEAPDDMDSFLRLLCLTGADAFLLEGVFRGEVW
DFMALPVSADNEMAMCELVINACADLLDEYSDDLKGMETAKMSERQKMAR
QIIEGEKEILQDVQRAYQRRLDSLDGLEYYAERRLKMLDLLRPIDENEIV
DSESGGRVARAFDENY*
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mRNA from alignment at tig00004442_pilon:955798..957348-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10116.t1 ID=Gchil10116.t1|Name=Gchil10116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00004442_pilon:955798..957348- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCTTTGTATCTCTCATAACGCTGGATCCGACCGGAGGAGGGTG
GAATGTGAGGCGTTCACCTTTTCGTTCTTCGCATACAGGCCGTTCTCCAT
GTAGGGCACAACGCATTAAGAAGCCAGTGACATATCAACGGCATCTCTTG
TCCATGGAGGCGGGCGGAATTGACGAGTGCATTTCATGGCTTACCGCAAA
TTCTGGAAAAGTCAACAATGTGCTGAACTTCTCACGTATGGACACACGCT
CGAATAGAGGAGTCTGCATATCGACTGGAAGCAAAGTGCTAGAAAGAACG
GAACTGGTCAGTCTTCCAGAAGGAACTTATATCGGCGTGAAAGAAGCGAA
GAAGCTCCTCGATGAAGCGTATCCGGGGCTTTCTTCTTGTGGTGTTGTCG
GAGAAGCAGGGGACTTCCTAGCATTAGCTCTGCTGCTCGAGAGAAGCAAA
GGTTCAGACTCATTCTTTGCGCCGTTCTTGAAAACGTTTCCTGAACAGAA
CAATTTAGATTGTCTACCTGTGTGGAACAATGAAGAGCATGAGATGCTTC
GCGGTTCTGCAGTTCATACGGATGTGATGAACTGGTTGGAGAACACAAAA
GAAGAGTGGGCAGCTCTTGATGGAAGAATTTTTCAGAAGGGTAGGCATGC
ATTCCCTGAAGAACATTTCTCTTTAAAGGCTTACCGATGGGCATTGTGTT
TAACCTCTTCTCGGGGCTTGTATGTCAGTCAGTCAGAACCCACGGTACTT
GCACCAATTCTAAACCTGTTTTCGCCCGTCAAGCCAGATTCTACTCAAAC
TGCTAGACTAGAAATCAATGGAGGCGTGTTTTTTGCGAAGAAAAAGCTTA
CCTTGAAAGCGAACCGAGACATGAATGATCGAGAATTTGTCACCGTGAGC
TACCGAAGAAGCATGAGAAACGCTGAACTCGCTTTTGCAAAAGGGCTGAC
GATAGACGATTCACGCTATAATTCTTTCTTCCTTTCATTCCAAATATCCT
CTCTAGACCGTTTCTACGATGACAAACGGGACGTCCTGGAGGCATCTGAT
GTTGAGACAAATCCGAAGTTTGAGATTGTTGGTGGAAGTAAATCGGGCGA
ATATGAAGCGCCAGATGACATGGACTCATTTCTTCGTCTACTTTGCCTAA
CTGGCGCGGACGCCTTTCTTCTGGAAGGAGTGTTTCGAGGAGAAGTATGG
GACTTCATGGCGTTACCGGTGAGTGCCGACAACGAGATGGCTATGTGTGA
ATTGGTTATCAATGCCTGCGCAGATTTGCTTGATGAATACTCTGACGATT
TGAAGGGAATGGAAACAGCTAAAATGTCGGAAAGGCAAAAAATGGCTAGA
CAAATTATTGAAGGAGAGAAAGAAATTCTGCAGGATGTGCAACGAGCGTA
TCAACGAAGATTAGATTCTCTCGATGGTTTAGAGTATTATGCTGAACGGC
GATTGAAAATGCTAGACTTGCTTCGACCCATTGACGAGAACGAAATCGTT
GATTCTGAGAGTGGGGGTAGAGTGGCTCGCGCTTTTGATGAGAACTACTG
A
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Coding sequence (CDS) from alignment at tig00004442_pilon:955798..957348-

>Gchil10116.t1 ID=Gchil10116.t1|Name=Gchil10116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00004442_pilon:955798..957348- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCTTTGTATCTCTCATAACGCTGGATCCGACCGGAGGAGGGTG
GAATGTGAGGCGTTCACCTTTTCGTTCTTCGCATACAGGCCGTTCTCCAT
GTAGGGCACAACGCATTAAGAAGCCAGTGACATATCAACGGCATCTCTTG
TCCATGGAGGCGGGCGGAATTGACGAGTGCATTTCATGGCTTACCGCAAA
TTCTGGAAAAGTCAACAATGTGCTGAACTTCTCACGTATGGACACACGCT
CGAATAGAGGAGTCTGCATATCGACTGGAAGCAAAGTGCTAGAAAGAACG
GAACTGGTCAGTCTTCCAGAAGGAACTTATATCGGCGTGAAAGAAGCGAA
GAAGCTCCTCGATGAAGCGTATCCGGGGCTTTCTTCTTGTGGTGTTGTCG
GAGAAGCAGGGGACTTCCTAGCATTAGCTCTGCTGCTCGAGAGAAGCAAA
GGTTCAGACTCATTCTTTGCGCCGTTCTTGAAAACGTTTCCTGAACAGAA
CAATTTAGATTGTCTACCTGTGTGGAACAATGAAGAGCATGAGATGCTTC
GCGGTTCTGCAGTTCATACGGATGTGATGAACTGGTTGGAGAACACAAAA
GAAGAGTGGGCAGCTCTTGATGGAAGAATTTTTCAGAAGGGTAGGCATGC
ATTCCCTGAAGAACATTTCTCTTTAAAGGCTTACCGATGGGCATTGTGTT
TAACCTCTTCTCGGGGCTTGTATGTCAGTCAGTCAGAACCCACGGTACTT
GCACCAATTCTAAACCTGTTTTCGCCCGTCAAGCCAGATTCTACTCAAAC
TGCTAGACTAGAAATCAATGGAGGCGTGTTTTTTGCGAAGAAAAAGCTTA
CCTTGAAAGCGAACCGAGACATGAATGATCGAGAATTTGTCACCGTGAGC
TACCGAAGAAGCATGAGAAACGCTGAACTCGCTTTTGCAAAAGGGCTGAC
GATAGACGATTCACGCTATAATTCTTTCTTCCTTTCATTCCAAATATCCT
CTCTAGACCGTTTCTACGATGACAAACGGGACGTCCTGGAGGCATCTGAT
GTTGAGACAAATCCGAAGTTTGAGATTGTTGGTGGAAGTAAATCGGGCGA
ATATGAAGCGCCAGATGACATGGACTCATTTCTTCGTCTACTTTGCCTAA
CTGGCGCGGACGCCTTTCTTCTGGAAGGAGTGTTTCGAGGAGAAGTATGG
GACTTCATGGCGTTACCGGTGAGTGCCGACAACGAGATGGCTATGTGTGA
ATTGGTTATCAATGCCTGCGCAGATTTGCTTGATGAATACTCTGACGATT
TGAAGGGAATGGAAACAGCTAAAATGTCGGAAAGGCAAAAAATGGCTAGA
CAAATTATTGAAGGAGAGAAAGAAATTCTGCAGGATGTGCAACGAGCGTA
TCAACGAAGATTAGATTCTCTCGATGGTTTAGAGTATTATGCTGAACGGC
GATTGAAAATGCTAGACTTGCTTCGACCCATTGACGAGAACGAAATCGTT
GATTCTGAGAGTGGGGGTAGAGTGGCTCGCGCTTTTGATGAGAACTACTG
A
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