Gchil10114.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10114.t1
Unique Name	Gchil10114.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:949995..951971 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703270.1
Preferred name	AVL9
PFAMs	Avl9,SPA
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006892,GO:0006928,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0016477,GO:0030427,GO:0031410,GO:0031982,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048193,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055037,GO:0097708
Evalue	5.3e-76
EggNOG OGs	KOG3823@1\|root,KOG3823@2759\|Eukaryota
Description	cell migration
COG category	EH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10114	Gchil10114	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 949995..951971 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10114.t1.stop1	Gchil10114.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 949995..949997 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10114.t1.CDS1	Gchil10114.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 949995..951971 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10114.t1.exon1	Gchil10114.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 949995..951971 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10114.t1.start1	Gchil10114.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 951969..951971 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10114.t1	Gchil10114.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 949995..951971 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:949995..951971-
coding sequence from alignment at tig00004442_pilon:949995..951971-

mRNA sequence

>Gchil10114.t1 ID=Gchil10114.t1|Name=Gchil10114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=659bp
MTPTAQSTDASIVAHVVVVGFHAQLGHRIEFAYPRLRGTPILRSPKISDT
SDISADVSPTISRRISTELLKESGLQENSGTWGTLPAEWAFMPLMALPDG
VHEHHHDLVYFTLPPDVHCVSCFRQVDAVDAKTHSASAGHLYEQGVAARG
SVQKSVVLLCRKPLFGVLSDRLVPAVRAYFDQGDFARTDVLSSLYHSLNV
SLSRPSLNSADTLFHGLDLRAIIRRLGPQMLAVIKLVLLERRVVIYSQPV
HHASNAVIALASVLPGALDSISPTMPPLEAADRYGAGFPLTLFSSQGRVV
LQPHAPLPLISKLIPNNMSNACLLGTSHNVGLLLSSAAASAARKALSARK
SAATPVDRLRKFNQSSSAPAGFVTPEKSRKAVYMESSRSSLSPFTPVALT
NDETLDPSSASERASGGVPIVDALVNLSSGKVSVSGVLEPLCRITRQERR
FMRDLMVSAATSSASASASGATGSFVGSDDYIRERLRLYLSNFLRSVAAV
DGVRGGPLAGEAYSTEMVSDFDFSMFEPYNIQFVRAWMTTRNAGLWSRSC
PIHSRLFVPPPKPEVDDALTEETLIPVDRVAAGLSGLRQNVAELGRFSSI
VSTKAAEGLSSLFKRIEQEVARMDTGGQPSPHTPASTSRVRKPDMRTTDR
SEPKSAPR*

spliced messenger RNA

>Gchil10114.t1 ID=Gchil10114.t1|Name=Gchil10114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004442_pilon:949995..951971- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCAACTGCCCAGTCGACAGACGCTTCCATCGTCGCGCATGTCGT
AGTAGTTGGTTTTCACGCTCAGCTGGGTCATCGCATAGAATTCGCGTATC
CTCGTCTGCGCGGCACTCCGATTCTGCGCTCCCCAAAGATTTCAGACACC
TCTGATATATCAGCTGATGTGTCGCCCACAATTTCACGCCGCATTAGCAC
CGAGTTGCTTAAAGAGTCTGGGTTGCAGGAGAATTCTGGCACATGGGGCA
CTCTGCCAGCAGAATGGGCTTTTATGCCGCTTATGGCGCTCCCAGACGGT
GTGCACGAGCATCACCATGACTTGGTCTACTTCACCTTGCCCCCCGATGT
GCATTGCGTTTCATGCTTTCGGCAGGTTGATGCTGTTGACGCAAAGACTC
ATTCTGCCTCTGCAGGCCACCTTTACGAACAAGGAGTCGCTGCACGAGGG
TCTGTGCAGAAGTCTGTTGTTCTTTTGTGCAGAAAACCATTGTTTGGAGT
GTTATCTGATCGTTTGGTACCTGCAGTTCGGGCGTATTTCGACCAGGGGG
ACTTTGCTCGCACTGATGTTCTATCCTCTCTCTATCATTCTCTGAACGTA
TCGCTTTCAAGACCATCCTTAAATAGTGCTGATACTTTATTCCATGGACT
TGATTTGCGTGCGATAATTCGCCGATTGGGGCCACAAATGTTGGCCGTTA
TTAAGCTTGTCCTTCTTGAACGTAGAGTAGTTATATACTCGCAACCGGTT
CACCACGCTTCAAATGCTGTCATTGCACTTGCCTCCGTGCTACCTGGAGC
CCTGGATTCTATTTCGCCCACAATGCCTCCTCTTGAAGCCGCCGATAGAT
ACGGTGCAGGCTTCCCACTCACTCTCTTTTCCTCGCAAGGACGTGTTGTT
CTGCAACCGCACGCACCGCTGCCTCTCATTTCCAAGCTTATTCCGAATAA
TATGTCGAATGCATGCTTGCTGGGCACTTCTCATAATGTTGGTCTTTTGT
TATCTTCTGCGGCCGCATCAGCAGCTAGGAAAGCTTTATCCGCGAGAAAA
TCGGCGGCTACACCCGTAGACAGATTGCGCAAGTTCAATCAGTCCAGTTC
GGCTCCAGCTGGGTTTGTCACGCCTGAGAAAAGCCGAAAAGCTGTATATA
TGGAGAGCTCTAGAAGTTCTTTGAGTCCCTTTACTCCTGTCGCGCTTACA
AACGATGAGACGTTGGATCCATCCTCAGCTTCAGAACGTGCAAGCGGAGG
TGTTCCCATTGTTGATGCTCTTGTTAACCTGTCTAGCGGAAAGGTTTCTG
TCTCTGGAGTGCTTGAACCCCTCTGTCGGATAACAAGACAAGAACGACGG
TTTATGCGGGATTTGATGGTTTCTGCAGCCACTTCGTCGGCGTCTGCGTC
TGCCTCAGGTGCGACAGGTAGCTTTGTTGGTTCCGATGACTACATCCGTG
AGCGTCTTCGACTGTATTTAAGCAACTTTTTGCGATCGGTCGCTGCCGTT
GACGGTGTTCGAGGTGGTCCACTAGCTGGTGAAGCGTATAGCACTGAAAT
GGTCAGCGACTTTGACTTCTCAATGTTTGAACCGTACAACATTCAATTCG
TTCGCGCATGGATGACAACACGAAATGCGGGGTTGTGGTCTAGATCATGT
CCTATACATTCAAGACTATTTGTTCCGCCTCCGAAACCCGAAGTTGATGA
CGCTCTTACAGAAGAAACTCTGATCCCCGTGGACAGGGTGGCAGCGGGTT
TGTCAGGTTTGCGTCAAAATGTAGCCGAGCTGGGGCGTTTTTCGAGCATT
GTCTCCACAAAGGCTGCAGAGGGACTTTCAAGTCTCTTCAAACGCATCGA
ACAAGAGGTAGCAAGGATGGATACTGGAGGGCAACCTTCTCCTCATACAC
CGGCTTCTACTAGTCGTGTGAGAAAGCCAGATATGAGAACTACCGATCGT
TCCGAACCGAAGTCGGCTCCTCGATAG

protein sequence of Gchil10114.t1

>Gchil10114.t1 ID=Gchil10114.t1|Name=Gchil10114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=659bp
MTPTAQSTDASIVAHVVVVGFHAQLGHRIEFAYPRLRGTPILRSPKISDT
SDISADVSPTISRRISTELLKESGLQENSGTWGTLPAEWAFMPLMALPDG
VHEHHHDLVYFTLPPDVHCVSCFRQVDAVDAKTHSASAGHLYEQGVAARG
SVQKSVVLLCRKPLFGVLSDRLVPAVRAYFDQGDFARTDVLSSLYHSLNV
SLSRPSLNSADTLFHGLDLRAIIRRLGPQMLAVIKLVLLERRVVIYSQPV
HHASNAVIALASVLPGALDSISPTMPPLEAADRYGAGFPLTLFSSQGRVV
LQPHAPLPLISKLIPNNMSNACLLGTSHNVGLLLSSAAASAARKALSARK
SAATPVDRLRKFNQSSSAPAGFVTPEKSRKAVYMESSRSSLSPFTPVALT
NDETLDPSSASERASGGVPIVDALVNLSSGKVSVSGVLEPLCRITRQERR
FMRDLMVSAATSSASASASGATGSFVGSDDYIRERLRLYLSNFLRSVAAV
DGVRGGPLAGEAYSTEMVSDFDFSMFEPYNIQFVRAWMTTRNAGLWSRSC
PIHSRLFVPPPKPEVDDALTEETLIPVDRVAAGLSGLRQNVAELGRFSSI
VSTKAAEGLSSLFKRIEQEVARMDTGGQPSPHTPASTSRVRKPDMRTTDR
SEPKSAPR*

mRNA from alignment at tig00004442_pilon:949995..951971-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10114.t1 ID=Gchil10114.t1|Name=Gchil10114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004442_pilon:949995..951971- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCAACTGCCCAGTCGACAGACGCTTCCATCGTCGCGCATGTCGT
AGTAGTTGGTTTTCACGCTCAGCTGGGTCATCGCATAGAATTCGCGTATC
CTCGTCTGCGCGGCACTCCGATTCTGCGCTCCCCAAAGATTTCAGACACC
TCTGATATATCAGCTGATGTGTCGCCCACAATTTCACGCCGCATTAGCAC
CGAGTTGCTTAAAGAGTCTGGGTTGCAGGAGAATTCTGGCACATGGGGCA
CTCTGCCAGCAGAATGGGCTTTTATGCCGCTTATGGCGCTCCCAGACGGT
GTGCACGAGCATCACCATGACTTGGTCTACTTCACCTTGCCCCCCGATGT
GCATTGCGTTTCATGCTTTCGGCAGGTTGATGCTGTTGACGCAAAGACTC
ATTCTGCCTCTGCAGGCCACCTTTACGAACAAGGAGTCGCTGCACGAGGG
TCTGTGCAGAAGTCTGTTGTTCTTTTGTGCAGAAAACCATTGTTTGGAGT
GTTATCTGATCGTTTGGTACCTGCAGTTCGGGCGTATTTCGACCAGGGGG
ACTTTGCTCGCACTGATGTTCTATCCTCTCTCTATCATTCTCTGAACGTA
TCGCTTTCAAGACCATCCTTAAATAGTGCTGATACTTTATTCCATGGACT
TGATTTGCGTGCGATAATTCGCCGATTGGGGCCACAAATGTTGGCCGTTA
TTAAGCTTGTCCTTCTTGAACGTAGAGTAGTTATATACTCGCAACCGGTT
CACCACGCTTCAAATGCTGTCATTGCACTTGCCTCCGTGCTACCTGGAGC
CCTGGATTCTATTTCGCCCACAATGCCTCCTCTTGAAGCCGCCGATAGAT
ACGGTGCAGGCTTCCCACTCACTCTCTTTTCCTCGCAAGGACGTGTTGTT
CTGCAACCGCACGCACCGCTGCCTCTCATTTCCAAGCTTATTCCGAATAA
TATGTCGAATGCATGCTTGCTGGGCACTTCTCATAATGTTGGTCTTTTGT
TATCTTCTGCGGCCGCATCAGCAGCTAGGAAAGCTTTATCCGCGAGAAAA
TCGGCGGCTACACCCGTAGACAGATTGCGCAAGTTCAATCAGTCCAGTTC
GGCTCCAGCTGGGTTTGTCACGCCTGAGAAAAGCCGAAAAGCTGTATATA
TGGAGAGCTCTAGAAGTTCTTTGAGTCCCTTTACTCCTGTCGCGCTTACA
AACGATGAGACGTTGGATCCATCCTCAGCTTCAGAACGTGCAAGCGGAGG
TGTTCCCATTGTTGATGCTCTTGTTAACCTGTCTAGCGGAAAGGTTTCTG
TCTCTGGAGTGCTTGAACCCCTCTGTCGGATAACAAGACAAGAACGACGG
TTTATGCGGGATTTGATGGTTTCTGCAGCCACTTCGTCGGCGTCTGCGTC
TGCCTCAGGTGCGACAGGTAGCTTTGTTGGTTCCGATGACTACATCCGTG
AGCGTCTTCGACTGTATTTAAGCAACTTTTTGCGATCGGTCGCTGCCGTT
GACGGTGTTCGAGGTGGTCCACTAGCTGGTGAAGCGTATAGCACTGAAAT
GGTCAGCGACTTTGACTTCTCAATGTTTGAACCGTACAACATTCAATTCG
TTCGCGCATGGATGACAACACGAAATGCGGGGTTGTGGTCTAGATCATGT
CCTATACATTCAAGACTATTTGTTCCGCCTCCGAAACCCGAAGTTGATGA
CGCTCTTACAGAAGAAACTCTGATCCCCGTGGACAGGGTGGCAGCGGGTT
TGTCAGGTTTGCGTCAAAATGTAGCCGAGCTGGGGCGTTTTTCGAGCATT
GTCTCCACAAAGGCTGCAGAGGGACTTTCAAGTCTCTTCAAACGCATCGA
ACAAGAGGTAGCAAGGATGGATACTGGAGGGCAACCTTCTCCTCATACAC
CGGCTTCTACTAGTCGTGTGAGAAAGCCAGATATGAGAACTACCGATCGT
TCCGAACCGAAGTCGGCTCCTCGATAG

Coding sequence (CDS) from alignment at tig00004442_pilon:949995..951971-

>Gchil10114.t1 ID=Gchil10114.t1|Name=Gchil10114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1977bp|location=Sequence derived from alignment at tig00004442_pilon:949995..951971- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCAACTGCCCAGTCGACAGACGCTTCCATCGTCGCGCATGTCGT
AGTAGTTGGTTTTCACGCTCAGCTGGGTCATCGCATAGAATTCGCGTATC
CTCGTCTGCGCGGCACTCCGATTCTGCGCTCCCCAAAGATTTCAGACACC
TCTGATATATCAGCTGATGTGTCGCCCACAATTTCACGCCGCATTAGCAC
CGAGTTGCTTAAAGAGTCTGGGTTGCAGGAGAATTCTGGCACATGGGGCA
CTCTGCCAGCAGAATGGGCTTTTATGCCGCTTATGGCGCTCCCAGACGGT
GTGCACGAGCATCACCATGACTTGGTCTACTTCACCTTGCCCCCCGATGT
GCATTGCGTTTCATGCTTTCGGCAGGTTGATGCTGTTGACGCAAAGACTC
ATTCTGCCTCTGCAGGCCACCTTTACGAACAAGGAGTCGCTGCACGAGGG
TCTGTGCAGAAGTCTGTTGTTCTTTTGTGCAGAAAACCATTGTTTGGAGT
GTTATCTGATCGTTTGGTACCTGCAGTTCGGGCGTATTTCGACCAGGGGG
ACTTTGCTCGCACTGATGTTCTATCCTCTCTCTATCATTCTCTGAACGTA
TCGCTTTCAAGACCATCCTTAAATAGTGCTGATACTTTATTCCATGGACT
TGATTTGCGTGCGATAATTCGCCGATTGGGGCCACAAATGTTGGCCGTTA
TTAAGCTTGTCCTTCTTGAACGTAGAGTAGTTATATACTCGCAACCGGTT
CACCACGCTTCAAATGCTGTCATTGCACTTGCCTCCGTGCTACCTGGAGC
CCTGGATTCTATTTCGCCCACAATGCCTCCTCTTGAAGCCGCCGATAGAT
ACGGTGCAGGCTTCCCACTCACTCTCTTTTCCTCGCAAGGACGTGTTGTT
CTGCAACCGCACGCACCGCTGCCTCTCATTTCCAAGCTTATTCCGAATAA
TATGTCGAATGCATGCTTGCTGGGCACTTCTCATAATGTTGGTCTTTTGT
TATCTTCTGCGGCCGCATCAGCAGCTAGGAAAGCTTTATCCGCGAGAAAA
TCGGCGGCTACACCCGTAGACAGATTGCGCAAGTTCAATCAGTCCAGTTC
GGCTCCAGCTGGGTTTGTCACGCCTGAGAAAAGCCGAAAAGCTGTATATA
TGGAGAGCTCTAGAAGTTCTTTGAGTCCCTTTACTCCTGTCGCGCTTACA
AACGATGAGACGTTGGATCCATCCTCAGCTTCAGAACGTGCAAGCGGAGG
TGTTCCCATTGTTGATGCTCTTGTTAACCTGTCTAGCGGAAAGGTTTCTG
TCTCTGGAGTGCTTGAACCCCTCTGTCGGATAACAAGACAAGAACGACGG
TTTATGCGGGATTTGATGGTTTCTGCAGCCACTTCGTCGGCGTCTGCGTC
TGCCTCAGGTGCGACAGGTAGCTTTGTTGGTTCCGATGACTACATCCGTG
AGCGTCTTCGACTGTATTTAAGCAACTTTTTGCGATCGGTCGCTGCCGTT
GACGGTGTTCGAGGTGGTCCACTAGCTGGTGAAGCGTATAGCACTGAAAT
GGTCAGCGACTTTGACTTCTCAATGTTTGAACCGTACAACATTCAATTCG
TTCGCGCATGGATGACAACACGAAATGCGGGGTTGTGGTCTAGATCATGT
CCTATACATTCAAGACTATTTGTTCCGCCTCCGAAACCCGAAGTTGATGA
CGCTCTTACAGAAGAAACTCTGATCCCCGTGGACAGGGTGGCAGCGGGTT
TGTCAGGTTTGCGTCAAAATGTAGCCGAGCTGGGGCGTTTTTCGAGCATT
GTCTCCACAAAGGCTGCAGAGGGACTTTCAAGTCTCTTCAAACGCATCGA
ACAAGAGGTAGCAAGGATGGATACTGGAGGGCAACCTTCTCCTCATACAC
CGGCTTCTACTAGTCGTGTGAGAAAGCCAGATATGAGAACTACCGATCGT
TCCGAACCGAAGTCGGCTCCTCGATAG