Gchil10113.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10113.t1
Unique NameGchil10113.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:948512..949510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD08301
Preferred nameDCAF7
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K11805
GOsGO:0000151,GO:0001558,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0008150,GO:0008152,GO:0008361,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010556,GO:0010564,GO:0010646,GO:0010648,GO:0010769,GO:0010975,GO:0016043,GO:0016363,GO:0016604,GO:0017016,GO:0017048,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019904,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030274,GO:0030334,GO:0030336,GO:0030516,GO:0031267,GO:0031323,GO:0031326,GO:0031344,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032991,GO:0033262,GO:0034399,GO:0035330,GO:0035331,GO:0036211,GO:0040008,GO:0040012,GO:0040013,GO:0042692,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045445,GO:0045595,GO:0045664,GO:0045806,GO:0045927,GO:0048365,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048627,GO:0048638,GO:0048699,GO:0048731,GO:0048747,GO:0048856,GO:0048869,GO:0050764,GO:0050765,GO:0050767,GO:0050770,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051052,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051239,GO:0051270,GO:0051271,GO:0051336,GO:0051726,GO:0051960,GO:0055001,GO:0055002,GO:0060099,GO:0060101,GO:0060255,GO:0060284,GO:0060627,GO:0061061,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090066,GO:0090329,GO:0120035,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1903463,GO:1905153,GO:1905154,GO:1990234,GO:2000026,GO:2000112,GO:2000145,GO:2000146
Evalue3.4e-126
EggNOG OGsKOG0290@1|root,KOG0290@2759|Eukaryota
Descriptionepidermal cell fate specification
COG categoryM
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10113Gchil10113Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 948512..949510 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10113.t1.start1Gchil10113.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 948512..948514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10113.t1.CDS1Gchil10113.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 948512..949510 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10113.t1.exon1Gchil10113.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 948512..949510 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10113.t1.stop1Gchil10113.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 949508..949510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10113.t1Gchil10113.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 948512..949510 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10113.t1 ID=Gchil10113.t1|Name=Gchil10113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp
MSSATSGADTLQFDAKSMLYSLGWSYRTDQPPRLAVGTFIEEYNNTVQVL
QQNSESLDFLSSFDHPYPTTKVAWIPDVNATHPDLIATSGDFLRLWQVHP
EGSPRMKCQLDNNQQSEFCAPLTALDWNQENPALIGTSSIDTTCTVWDVE
AQQAKTQLIAHDSEVYDFAFAARGTDVFASVGADGSVRLFDLRSLEHSTI
IYESRDVTPLLRLRWNTRNPNYLATVQLDSPNVIILDIRHPSLPLATLDH
RSSTSDNCVNAISWAPHSAVQLASGGDGCLALIWNIANIPKRIEDPASSY
GAGDAINNIQWAPTDSEWLAITVRDTVRVLRI*
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spliced messenger RNA

>Gchil10113.t1 ID=Gchil10113.t1|Name=Gchil10113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004442_pilon:948512..949510+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCGCCACGAGTGGAGCAGATACGCTCCAATTCGACGCCAAGTC
TATGTTGTACAGTCTTGGTTGGAGCTATCGCACTGACCAACCGCCACGGT
TAGCCGTTGGCACTTTCATCGAGGAGTACAATAACACTGTGCAAGTACTG
CAACAAAATTCTGAATCCCTCGATTTCTTGTCTTCGTTTGACCATCCCTA
TCCGACCACCAAAGTTGCATGGATACCAGATGTTAATGCAACCCACCCCG
ATCTCATAGCCACTTCAGGCGATTTTTTGCGATTATGGCAGGTTCATCCG
GAGGGTTCTCCGAGAATGAAGTGTCAGCTTGACAACAATCAGCAAAGCGA
GTTCTGCGCACCCCTCACTGCCTTAGATTGGAATCAAGAAAATCCGGCAT
TGATCGGTACATCGTCAATAGACACTACATGCACTGTCTGGGATGTTGAG
GCGCAGCAGGCAAAGACTCAACTCATTGCGCACGACAGCGAAGTATACGA
CTTTGCATTTGCGGCTCGAGGAACTGACGTTTTTGCCTCTGTGGGAGCAG
ATGGATCGGTGCGACTCTTTGACCTTCGCTCTTTGGAGCATTCAACCATA
ATCTACGAATCACGAGATGTGACTCCTCTTCTTCGTCTTCGATGGAACAC
GAGAAACCCAAACTATCTCGCAACGGTCCAATTAGATTCTCCTAATGTTA
TTATACTTGACATTCGTCATCCGTCTTTGCCCTTGGCAACCTTGGACCAC
AGGAGTTCCACATCTGATAACTGTGTCAATGCTATATCGTGGGCTCCGCA
TTCTGCTGTGCAACTTGCATCAGGGGGGGACGGTTGTCTTGCTCTTATAT
GGAATATTGCTAACATCCCGAAACGCATCGAAGACCCTGCTTCTTCGTAC
GGCGCTGGTGACGCCATCAACAATATTCAGTGGGCACCAACGGATTCTGA
GTGGCTAGCCATAACGGTAAGAGATACCGTCCGAGTGCTACGCATCTAG
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protein sequence of Gchil10113.t1

>Gchil10113.t1 ID=Gchil10113.t1|Name=Gchil10113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=333bp
MSSATSGADTLQFDAKSMLYSLGWSYRTDQPPRLAVGTFIEEYNNTVQVL
QQNSESLDFLSSFDHPYPTTKVAWIPDVNATHPDLIATSGDFLRLWQVHP
EGSPRMKCQLDNNQQSEFCAPLTALDWNQENPALIGTSSIDTTCTVWDVE
AQQAKTQLIAHDSEVYDFAFAARGTDVFASVGADGSVRLFDLRSLEHSTI
IYESRDVTPLLRLRWNTRNPNYLATVQLDSPNVIILDIRHPSLPLATLDH
RSSTSDNCVNAISWAPHSAVQLASGGDGCLALIWNIANIPKRIEDPASSY
GAGDAINNIQWAPTDSEWLAITVRDTVRVLRI*
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mRNA from alignment at tig00004442_pilon:948512..949510+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10113.t1 ID=Gchil10113.t1|Name=Gchil10113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004442_pilon:948512..949510+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCGCCACGAGTGGAGCAGATACGCTCCAATTCGACGCCAAGTC
TATGTTGTACAGTCTTGGTTGGAGCTATCGCACTGACCAACCGCCACGGT
TAGCCGTTGGCACTTTCATCGAGGAGTACAATAACACTGTGCAAGTACTG
CAACAAAATTCTGAATCCCTCGATTTCTTGTCTTCGTTTGACCATCCCTA
TCCGACCACCAAAGTTGCATGGATACCAGATGTTAATGCAACCCACCCCG
ATCTCATAGCCACTTCAGGCGATTTTTTGCGATTATGGCAGGTTCATCCG
GAGGGTTCTCCGAGAATGAAGTGTCAGCTTGACAACAATCAGCAAAGCGA
GTTCTGCGCACCCCTCACTGCCTTAGATTGGAATCAAGAAAATCCGGCAT
TGATCGGTACATCGTCAATAGACACTACATGCACTGTCTGGGATGTTGAG
GCGCAGCAGGCAAAGACTCAACTCATTGCGCACGACAGCGAAGTATACGA
CTTTGCATTTGCGGCTCGAGGAACTGACGTTTTTGCCTCTGTGGGAGCAG
ATGGATCGGTGCGACTCTTTGACCTTCGCTCTTTGGAGCATTCAACCATA
ATCTACGAATCACGAGATGTGACTCCTCTTCTTCGTCTTCGATGGAACAC
GAGAAACCCAAACTATCTCGCAACGGTCCAATTAGATTCTCCTAATGTTA
TTATACTTGACATTCGTCATCCGTCTTTGCCCTTGGCAACCTTGGACCAC
AGGAGTTCCACATCTGATAACTGTGTCAATGCTATATCGTGGGCTCCGCA
TTCTGCTGTGCAACTTGCATCAGGGGGGGACGGTTGTCTTGCTCTTATAT
GGAATATTGCTAACATCCCGAAACGCATCGAAGACCCTGCTTCTTCGTAC
GGCGCTGGTGACGCCATCAACAATATTCAGTGGGCACCAACGGATTCTGA
GTGGCTAGCCATAACGGTAAGAGATACCGTCCGAGTGCTACGCATCTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:948512..949510+

>Gchil10113.t1 ID=Gchil10113.t1|Name=Gchil10113.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00004442_pilon:948512..949510+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCGCCACGAGTGGAGCAGATACGCTCCAATTCGACGCCAAGTC
TATGTTGTACAGTCTTGGTTGGAGCTATCGCACTGACCAACCGCCACGGT
TAGCCGTTGGCACTTTCATCGAGGAGTACAATAACACTGTGCAAGTACTG
CAACAAAATTCTGAATCCCTCGATTTCTTGTCTTCGTTTGACCATCCCTA
TCCGACCACCAAAGTTGCATGGATACCAGATGTTAATGCAACCCACCCCG
ATCTCATAGCCACTTCAGGCGATTTTTTGCGATTATGGCAGGTTCATCCG
GAGGGTTCTCCGAGAATGAAGTGTCAGCTTGACAACAATCAGCAAAGCGA
GTTCTGCGCACCCCTCACTGCCTTAGATTGGAATCAAGAAAATCCGGCAT
TGATCGGTACATCGTCAATAGACACTACATGCACTGTCTGGGATGTTGAG
GCGCAGCAGGCAAAGACTCAACTCATTGCGCACGACAGCGAAGTATACGA
CTTTGCATTTGCGGCTCGAGGAACTGACGTTTTTGCCTCTGTGGGAGCAG
ATGGATCGGTGCGACTCTTTGACCTTCGCTCTTTGGAGCATTCAACCATA
ATCTACGAATCACGAGATGTGACTCCTCTTCTTCGTCTTCGATGGAACAC
GAGAAACCCAAACTATCTCGCAACGGTCCAATTAGATTCTCCTAATGTTA
TTATACTTGACATTCGTCATCCGTCTTTGCCCTTGGCAACCTTGGACCAC
AGGAGTTCCACATCTGATAACTGTGTCAATGCTATATCGTGGGCTCCGCA
TTCTGCTGTGCAACTTGCATCAGGGGGGGACGGTTGTCTTGCTCTTATAT
GGAATATTGCTAACATCCCGAAACGCATCGAAGACCCTGCTTCTTCGTAC
GGCGCTGGTGACGCCATCAACAATATTCAGTGGGCACCAACGGATTCTGA
GTGGCTAGCCATAACGGTAAGAGATACCGTCCGAGTGCTACGCATCTAG
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