Gchil10111.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10111.t1
Unique NameGchil10111.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:943410..944263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10111Gchil10111Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 943410..944263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10111.t1Gchil10111.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 943410..944263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10111.t1.stop1Gchil10111.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 943410..943412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10111.t1.CDS1Gchil10111.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 943410..944115 -
Gchil10111.t1.CDS2Gchil10111.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 944196..944263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10111.t1.exon1Gchil10111.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 943410..944115 -
Gchil10111.t1.exon2Gchil10111.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 944196..944263 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10111.t1.intron1Gchil10111.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 944116..944195 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10111.t1.start1Gchil10111.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 944261..944263 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10111.t1 ID=Gchil10111.t1|Name=Gchil10111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp
MLRLSLMCDLISFLLISTMLSRTFMYIMKRRSGSVGPSMAPVLVRFWAVH
GAVQFIYQVLHIYLAPFHGKILISFVRAPLLVLLCYGRRLPVSCHVYQTS
IAPFYESNEPEIEERLQRARTTKSELDEAFRQLAVYLLQRMAAGGLSNII
PIPRFNAIQPVPSVDVSSPPRKEKEKSNPLPLSTAVFPSSRNFFGGESDH
RVRTVFAANRDNLGGAIQPNRVSEMPKAAYDNLRAFRKQLRDRLKKTTSD
TTKAAPG*
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spliced messenger RNA

>Gchil10111.t1 ID=Gchil10111.t1|Name=Gchil10111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004442_pilon:943410..944263- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGTTTATCGCTAATGTGCGACCTTATCAGTTTCTTACTCATTTC
CACTATGTTAAGTCGAACATTTATGTATATAATGAAAAGGAGATCTGGTT
CAGTAGGGCCGTCGATGGCACCAGTTCTTGTCCGTTTCTGGGCTGTGCAT
GGCGCCGTCCAGTTCATCTATCAAGTCTTACATATCTATCTTGCACCGTT
TCACGGAAAAATCCTAATATCATTTGTGAGAGCACCTCTACTCGTGCTTC
TTTGTTACGGTCGTCGTCTTCCAGTATCATGTCATGTATACCAAACAAGT
ATTGCCCCATTTTATGAATCGAATGAACCCGAAATAGAAGAACGTTTGCA
ACGTGCCAGAACAACAAAATCCGAGCTGGATGAAGCCTTTCGCCAGCTTG
CTGTTTATTTGTTACAAAGAATGGCAGCCGGGGGCTTATCGAATATAATA
CCAATACCAAGGTTTAATGCAATTCAACCTGTTCCAAGCGTGGATGTCTC
TAGCCCACCCAGAAAAGAGAAAGAAAAGAGCAACCCCTTGCCGCTGAGCA
CAGCAGTGTTTCCGAGTAGCCGAAATTTCTTTGGGGGTGAATCTGATCAT
CGCGTTAGAACCGTCTTTGCTGCAAATCGAGACAATCTTGGAGGCGCAAT
CCAGCCAAATCGAGTTTCAGAAATGCCGAAGGCTGCTTACGACAATTTGC
GTGCTTTTAGAAAGCAGCTGCGAGACCGACTTAAGAAGACAACAAGTGAC
ACTACTAAGGCTGCCCCTGGGTGA
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protein sequence of Gchil10111.t1

>Gchil10111.t1 ID=Gchil10111.t1|Name=Gchil10111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=258bp
MLRLSLMCDLISFLLISTMLSRTFMYIMKRRSGSVGPSMAPVLVRFWAVH
GAVQFIYQVLHIYLAPFHGKILISFVRAPLLVLLCYGRRLPVSCHVYQTS
IAPFYESNEPEIEERLQRARTTKSELDEAFRQLAVYLLQRMAAGGLSNII
PIPRFNAIQPVPSVDVSSPPRKEKEKSNPLPLSTAVFPSSRNFFGGESDH
RVRTVFAANRDNLGGAIQPNRVSEMPKAAYDNLRAFRKQLRDRLKKTTSD
TTKAAPG*
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mRNA from alignment at tig00004442_pilon:943410..944263-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10111.t1 ID=Gchil10111.t1|Name=Gchil10111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=854bp|location=Sequence derived from alignment at tig00004442_pilon:943410..944263- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACGTTTATCGCTAATGTGCGACCTTATCAGTTTCTTACTCATTTC
CACTATGTTAAGTCGAACGTAAGTCATTTTATATCTCTTATTGCCTTTGC
GATGCTGAACTATCCGATCTCTGACTCCTGCCGTTTCGAGAGCAACAGAT
TTATGTATATAATGAAAAGGAGATCTGGTTCAGTAGGGCCGTCGATGGCA
CCAGTTCTTGTCCGTTTCTGGGCTGTGCATGGCGCCGTCCAGTTCATCTA
TCAAGTCTTACATATCTATCTTGCACCGTTTCACGGAAAAATCCTAATAT
CATTTGTGAGAGCACCTCTACTCGTGCTTCTTTGTTACGGTCGTCGTCTT
CCAGTATCATGTCATGTATACCAAACAAGTATTGCCCCATTTTATGAATC
GAATGAACCCGAAATAGAAGAACGTTTGCAACGTGCCAGAACAACAAAAT
CCGAGCTGGATGAAGCCTTTCGCCAGCTTGCTGTTTATTTGTTACAAAGA
ATGGCAGCCGGGGGCTTATCGAATATAATACCAATACCAAGGTTTAATGC
AATTCAACCTGTTCCAAGCGTGGATGTCTCTAGCCCACCCAGAAAAGAGA
AAGAAAAGAGCAACCCCTTGCCGCTGAGCACAGCAGTGTTTCCGAGTAGC
CGAAATTTCTTTGGGGGTGAATCTGATCATCGCGTTAGAACCGTCTTTGC
TGCAAATCGAGACAATCTTGGAGGCGCAATCCAGCCAAATCGAGTTTCAG
AAATGCCGAAGGCTGCTTACGACAATTTGCGTGCTTTTAGAAAGCAGCTG
CGAGACCGACTTAAGAAGACAACAAGTGACACTACTAAGGCTGCCCCTGG
GTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:943410..944263-

>Gchil10111.t1 ID=Gchil10111.t1|Name=Gchil10111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00004442_pilon:943410..944263- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACGTTTATCGCTAATGTGCGACCTTATCAGTTTCTTACTCATTTC
CACTATGTTAAGTCGAACATTTATGTATATAATGAAAAGGAGATCTGGTT
CAGTAGGGCCGTCGATGGCACCAGTTCTTGTCCGTTTCTGGGCTGTGCAT
GGCGCCGTCCAGTTCATCTATCAAGTCTTACATATCTATCTTGCACCGTT
TCACGGAAAAATCCTAATATCATTTGTGAGAGCACCTCTACTCGTGCTTC
TTTGTTACGGTCGTCGTCTTCCAGTATCATGTCATGTATACCAAACAAGT
ATTGCCCCATTTTATGAATCGAATGAACCCGAAATAGAAGAACGTTTGCA
ACGTGCCAGAACAACAAAATCCGAGCTGGATGAAGCCTTTCGCCAGCTTG
CTGTTTATTTGTTACAAAGAATGGCAGCCGGGGGCTTATCGAATATAATA
CCAATACCAAGGTTTAATGCAATTCAACCTGTTCCAAGCGTGGATGTCTC
TAGCCCACCCAGAAAAGAGAAAGAAAAGAGCAACCCCTTGCCGCTGAGCA
CAGCAGTGTTTCCGAGTAGCCGAAATTTCTTTGGGGGTGAATCTGATCAT
CGCGTTAGAACCGTCTTTGCTGCAAATCGAGACAATCTTGGAGGCGCAAT
CCAGCCAAATCGAGTTTCAGAAATGCCGAAGGCTGCTTACGACAATTTGC
GTGCTTTTAGAAAGCAGCTGCGAGACCGACTTAAGAAGACAACAAGTGAC
ACTACTAAGGCTGCCCCTGGGTGA
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