Gchil10110.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10110.t1
Unique NameGchil10110.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:942428..943183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703510.1
Preferred namePSMA6
PFAMsProteasome,Proteasome_A_N
Max annot lvl2759|Eukaryota
KEGG koko:K02730
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252
Evalue9.84e-123
EggNOG OGsCOG0638@1|root,KOG0182@2759|Eukaryota
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10110Gchil10110Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 942428..943183 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10110.t1.start1Gchil10110.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 942428..942430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10110.t1.CDS1Gchil10110.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 942428..943183 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10110.t1.exon1Gchil10110.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 942428..943183 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10110.t1.stop1Gchil10110.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 943181..943183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10110.t1Gchil10110.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 942428..943183 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10110.t1 ID=Gchil10110.t1|Name=Gchil10110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MSRGSSAGYDRHITIFSPEGRLFQVEYAFKAVKAPGITSIAVRGKDSVCA
VTQKKVPDKLIDPTSVTSAFQLSENHGCIATGVITDAKAMIQRTRSEAAD
FKFDYAYEIPVEYLARRVADENQVYTQHAYMRPLGVSMIIMGMDEEEGPS
LFKCDPAGHYVGYRACAAGAKEQEALNFLQNKFKTKEDETQVELSEDDTV
QTAIAALQNVLSADFKPEEIEVAVVSERTPKFHLLTAKEVEDHLTALAER
D*
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spliced messenger RNA

>Gchil10110.t1 ID=Gchil10110.t1|Name=Gchil10110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004442_pilon:942428..943183+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCGGAAGTAGTGCTGGTTACGATCGTCACATTACCATCTTCTC
ACCGGAGGGGAGATTGTTTCAGGTTGAATATGCTTTCAAGGCTGTTAAAG
CTCCAGGCATAACATCCATTGCAGTACGAGGCAAAGATTCGGTATGTGCT
GTTACGCAGAAGAAAGTGCCTGACAAACTTATTGATCCAACATCGGTCAC
GTCAGCATTTCAACTTTCAGAGAATCACGGCTGCATTGCAACGGGCGTAA
TCACAGATGCAAAGGCAATGATACAGAGAACGCGTTCAGAGGCGGCTGAC
TTTAAGTTTGACTACGCCTACGAAATCCCTGTGGAATATCTCGCCCGCCG
CGTCGCTGACGAAAATCAGGTTTATACCCAACACGCGTACATGCGCCCTC
TCGGAGTATCCATGATCATCATGGGAATGGACGAAGAAGAAGGACCATCG
CTCTTCAAATGCGACCCGGCCGGGCACTACGTTGGTTACAGAGCTTGCGC
TGCAGGAGCGAAAGAACAAGAGGCTCTCAATTTTCTTCAGAACAAGTTCA
AAACTAAGGAGGATGAAACACAGGTTGAGTTGTCGGAGGATGACACCGTT
CAAACAGCGATCGCAGCCTTGCAGAACGTTCTTTCCGCCGATTTTAAACC
TGAGGAAATCGAGGTCGCTGTGGTCTCTGAAAGAACACCGAAGTTTCATC
TGTTGACAGCCAAAGAAGTCGAAGACCACCTTACCGCGTTGGCAGAAAGA
GATTGA
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protein sequence of Gchil10110.t1

>Gchil10110.t1 ID=Gchil10110.t1|Name=Gchil10110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MSRGSSAGYDRHITIFSPEGRLFQVEYAFKAVKAPGITSIAVRGKDSVCA
VTQKKVPDKLIDPTSVTSAFQLSENHGCIATGVITDAKAMIQRTRSEAAD
FKFDYAYEIPVEYLARRVADENQVYTQHAYMRPLGVSMIIMGMDEEEGPS
LFKCDPAGHYVGYRACAAGAKEQEALNFLQNKFKTKEDETQVELSEDDTV
QTAIAALQNVLSADFKPEEIEVAVVSERTPKFHLLTAKEVEDHLTALAER
D*
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mRNA from alignment at tig00004442_pilon:942428..943183+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10110.t1 ID=Gchil10110.t1|Name=Gchil10110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004442_pilon:942428..943183+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCGCGGAAGTAGTGCTGGTTACGATCGTCACATTACCATCTTCTC
ACCGGAGGGGAGATTGTTTCAGGTTGAATATGCTTTCAAGGCTGTTAAAG
CTCCAGGCATAACATCCATTGCAGTACGAGGCAAAGATTCGGTATGTGCT
GTTACGCAGAAGAAAGTGCCTGACAAACTTATTGATCCAACATCGGTCAC
GTCAGCATTTCAACTTTCAGAGAATCACGGCTGCATTGCAACGGGCGTAA
TCACAGATGCAAAGGCAATGATACAGAGAACGCGTTCAGAGGCGGCTGAC
TTTAAGTTTGACTACGCCTACGAAATCCCTGTGGAATATCTCGCCCGCCG
CGTCGCTGACGAAAATCAGGTTTATACCCAACACGCGTACATGCGCCCTC
TCGGAGTATCCATGATCATCATGGGAATGGACGAAGAAGAAGGACCATCG
CTCTTCAAATGCGACCCGGCCGGGCACTACGTTGGTTACAGAGCTTGCGC
TGCAGGAGCGAAAGAACAAGAGGCTCTCAATTTTCTTCAGAACAAGTTCA
AAACTAAGGAGGATGAAACACAGGTTGAGTTGTCGGAGGATGACACCGTT
CAAACAGCGATCGCAGCCTTGCAGAACGTTCTTTCCGCCGATTTTAAACC
TGAGGAAATCGAGGTCGCTGTGGTCTCTGAAAGAACACCGAAGTTTCATC
TGTTGACAGCCAAAGAAGTCGAAGACCACCTTACCGCGTTGGCAGAAAGA
GATTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:942428..943183+

>Gchil10110.t1 ID=Gchil10110.t1|Name=Gchil10110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00004442_pilon:942428..943183+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCGCGGAAGTAGTGCTGGTTACGATCGTCACATTACCATCTTCTC
ACCGGAGGGGAGATTGTTTCAGGTTGAATATGCTTTCAAGGCTGTTAAAG
CTCCAGGCATAACATCCATTGCAGTACGAGGCAAAGATTCGGTATGTGCT
GTTACGCAGAAGAAAGTGCCTGACAAACTTATTGATCCAACATCGGTCAC
GTCAGCATTTCAACTTTCAGAGAATCACGGCTGCATTGCAACGGGCGTAA
TCACAGATGCAAAGGCAATGATACAGAGAACGCGTTCAGAGGCGGCTGAC
TTTAAGTTTGACTACGCCTACGAAATCCCTGTGGAATATCTCGCCCGCCG
CGTCGCTGACGAAAATCAGGTTTATACCCAACACGCGTACATGCGCCCTC
TCGGAGTATCCATGATCATCATGGGAATGGACGAAGAAGAAGGACCATCG
CTCTTCAAATGCGACCCGGCCGGGCACTACGTTGGTTACAGAGCTTGCGC
TGCAGGAGCGAAAGAACAAGAGGCTCTCAATTTTCTTCAGAACAAGTTCA
AAACTAAGGAGGATGAAACACAGGTTGAGTTGTCGGAGGATGACACCGTT
CAAACAGCGATCGCAGCCTTGCAGAACGTTCTTTCCGCCGATTTTAAACC
TGAGGAAATCGAGGTCGCTGTGGTCTCTGAAAGAACACCGAAGTTTCATC
TGTTGACAGCCAAAGAAGTCGAAGACCACCTTACCGCGTTGGCAGAAAGA
GATTGA
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