Gchil10109.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10109.t1
Unique NameGchil10109.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:941435..942001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA13G29291.1
PFAMsubiquitin
Max annot lvl35493|Streptophyta
KEGG koko:K13113
KEGG Pathwayko04212,map04212
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0019538,GO:0031386,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1901564
Evalue1.42e-33
EggNOG OGsKOG3493@1|root,KOG3493@2759|Eukaryota,37VXX@33090|Viridiplantae,3GK34@35493|Streptophyta,4JQIB@91835|fabids
DescriptionUbiquitin-like protein
COG categoryO
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10109Gchil10109Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 941435..942001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10109.t1Gchil10109.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 941435..942001 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10109.t1.stop1Gchil10109.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 941435..941437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10109.t1.CDS1Gchil10109.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 941435..941483 -
Gchil10109.t1.CDS2Gchil10109.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 941590..941731 -
Gchil10109.t1.CDS3Gchil10109.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 941815..942001 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10109.t1.exon1Gchil10109.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 941435..941483 -
Gchil10109.t1.exon2Gchil10109.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 941590..941731 -
Gchil10109.t1.exon3Gchil10109.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 941815..942001 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10109.t1.intron1Gchil10109.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 941484..941589 -
Gchil10109.t1.intron2Gchil10109.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 941732..941814 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10109.t1.start1Gchil10109.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 941999..942001 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10109.t1 ID=Gchil10109.t1|Name=Gchil10109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=126bp
MRIYQSDAPHCFILNTETSTRNSSEQHSSISASYLEKFVHFVLRIRSFTH
PGMIEVILNDRLGQKVRVKCEPDDTIGQLKLLVAALTGTRAEKLRIQRAS
IVYKDHITLADYEIKDGQGLELFYN*
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spliced messenger RNA

>Gchil10109.t1 ID=Gchil10109.t1|Name=Gchil10109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00004442_pilon:941435..942001- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAATTTACCAGTCTGACGCACCACATTGCTTCATCTTGAATACGGA
AACTTCTACCAGGAATTCTTCAGAACAACACAGCTCAATTTCGGCGTCAT
ATCTTGAGAAATTTGTTCATTTTGTGCTACGAATTCGTTCTTTCACCCAC
CCGGGAATGATTGAAGTCATACTCAACGACCGGCTTGGACAAAAAGTTCG
CGTAAAATGCGAGCCAGACGACACCATAGGCCAGTTGAAATTGCTGGTTG
CTGCTCTCACCGGAACGCGTGCGGAGAAACTCCGGATTCAGAGGGCGAGT
ATCGTGTACAAAGATCACATCACACTTGCAGACTACGAGATTAAGGATGG
GCAAGGACTCGAATTGTTCTACAACTAA
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protein sequence of Gchil10109.t1

>Gchil10109.t1 ID=Gchil10109.t1|Name=Gchil10109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=126bp
MRIYQSDAPHCFILNTETSTRNSSEQHSSISASYLEKFVHFVLRIRSFTH
PGMIEVILNDRLGQKVRVKCEPDDTIGQLKLLVAALTGTRAEKLRIQRAS
IVYKDHITLADYEIKDGQGLELFYN*
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mRNA from alignment at tig00004442_pilon:941435..942001-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10109.t1 ID=Gchil10109.t1|Name=Gchil10109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00004442_pilon:941435..942001- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAATTTACCAGTCTGACGCACCACATTGCTTCATCTTGAATACGGA
AACTTCTACCAGGAATTCTTCAGAACAACACAGCTCAATTTCGGCGTCAT
ATCTTGAGAAATTTGTTCATTTTGTGCTACGAATTCGTTCTTTCACCCAC
CCGGGAATGATTGAAGTCATACTCAACGACCGGCTTGGTACGTCATGAAT
TCAGAAAGATACCCATCATGGATCAAAGGATTCGAACTAATCTCAGGATA
TTTCTTGGTTTGAACTACAGGACAAAAAGTTCGCGTAAAATGCGAGCCAG
ACGACACCATAGGCCAGTTGAAATTGCTGGTTGCTGCTCTCACCGGAACG
CGTGCGGAGAAACTCCGGATTCAGAGGGCGAGTATCGTGTACAAAGATCA
CATCACACTTGCGTAAGTAACCATCCATGCTCGTCCTTCAAAATAAGTCG
GAGAATTTCAACGAATCGGAAGATCAAGTAATAACATTGCTAGTGAATGT
TTATGTGCCACATGCTAGAGACTACGAGATTAAGGATGGGCAAGGACTCG
AATTGTTCTACAACTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:941435..942001-

>Gchil10109.t1 ID=Gchil10109.t1|Name=Gchil10109.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00004442_pilon:941435..942001- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAATTTACCAGTCTGACGCACCACATTGCTTCATCTTGAATACGGA
AACTTCTACCAGGAATTCTTCAGAACAACACAGCTCAATTTCGGCGTCAT
ATCTTGAGAAATTTGTTCATTTTGTGCTACGAATTCGTTCTTTCACCCAC
CCGGGAATGATTGAAGTCATACTCAACGACCGGCTTGGACAAAAAGTTCG
CGTAAAATGCGAGCCAGACGACACCATAGGCCAGTTGAAATTGCTGGTTG
CTGCTCTCACCGGAACGCGTGCGGAGAAACTCCGGATTCAGAGGGCGAGT
ATCGTGTACAAAGATCACATCACACTTGCAGACTACGAGATTAAGGATGG
GCAAGGACTCGAATTGTTCTACAACTAA
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