Gchil10107.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10107.t1
Unique NameGchil10107.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:939049..939930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S31_343V6.1
PFAMsJAB,MitMem_reg
Max annot lvl35493|Streptophyta
KEGG koko:K03249
KEGG Pathwayko03013,map03013
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009846,GO:0009856,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0016020,GO:0019538,GO:0022414,GO:0031369,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051704,GO:0061458,GO:0071541,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901700
Evalue1.38e-73
EggNOG OGsCOG1310@1|root,KOG2975@2759|Eukaryota,37NSR@33090|Viridiplantae,3GEI1@35493|Streptophyta
DescriptionComponent of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10107Gchil10107Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 939049..939930 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10107.t1.stop1Gchil10107.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 939049..939051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10107.t1.CDS1Gchil10107.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 939049..939930 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10107.t1.exon1Gchil10107.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 939049..939930 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10107.t1.start1Gchil10107.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 939928..939930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10107.t1Gchil10107.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 939049..939930 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10107.t1 ID=Gchil10107.t1|Name=Gchil10107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp
MESTDIFLGGEDSGVREVQVSPVVLFNVLDHFIRRTEGKKRVIGTLLGRF
TASGTVYVTDSFPLPHSENGEEVAVDTDYNNNMYGLHNRVNSAEELVGWY
ATGTETDLKSVIIHEFYGRECVNPVHLLVDAELSSDRFDMSAFVSTAYKI
DELALSSEFRSIPVCMKPEKAEKVGLDVLFKNRRREEGDLSSPVMASEIE
NLQKSMERLLDLLDTIGKNVDAVVAGEIEGDVTTGRFLAETLTMVPRMNA
SDFERLFGDNMRDLLMVAYLCKLTQTQLIVAEKLLCVDTTPKY*
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spliced messenger RNA

>Gchil10107.t1 ID=Gchil10107.t1|Name=Gchil10107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004442_pilon:939049..939930- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCAACCGATATCTTCCTTGGCGGAGAGGATAGCGGAGTTCGTGA
GGTTCAGGTTTCTCCAGTTGTCCTATTCAATGTATTAGATCATTTCATTC
GCCGGACAGAGGGGAAAAAGCGAGTGATTGGGACGTTGTTGGGACGATTC
ACTGCATCAGGCACTGTATACGTAACTGATTCTTTTCCATTACCACATTC
TGAAAACGGTGAAGAAGTCGCAGTGGATACAGACTACAATAACAATATGT
ACGGCCTTCACAACAGGGTGAACTCAGCAGAGGAGCTTGTTGGATGGTAC
GCTACTGGAACTGAGACGGATCTTAAGTCTGTCATCATTCATGAATTTTA
TGGACGGGAGTGTGTAAATCCAGTCCATTTATTAGTGGATGCTGAGTTGT
CTAGCGACCGATTTGATATGAGTGCCTTTGTTTCAACCGCGTACAAGATC
GATGAGCTTGCTCTGAGTTCCGAATTCCGCTCCATTCCTGTTTGCATGAA
ACCAGAGAAAGCAGAAAAGGTAGGTCTCGACGTCCTTTTCAAGAACAGAC
GAAGGGAGGAAGGTGATCTCTCGTCCCCTGTTATGGCTTCCGAAATCGAA
AACCTTCAGAAATCTATGGAAAGGCTCTTAGACCTATTGGATACTATCGG
AAAAAATGTGGATGCCGTTGTCGCTGGAGAGATAGAAGGCGATGTTACAA
CCGGAAGATTTTTGGCGGAAACGTTGACAATGGTGCCAAGGATGAATGCA
TCTGATTTCGAAAGGTTATTTGGTGACAACATGCGCGATCTGCTGATGGT
CGCATATCTCTGCAAACTTACGCAAACACAACTGATTGTTGCTGAAAAGC
TGCTTTGCGTAGATACCACACCGAAGTACTAG
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protein sequence of Gchil10107.t1

>Gchil10107.t1 ID=Gchil10107.t1|Name=Gchil10107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MESTDIFLGGEDSGVREVQVSPVVLFNVLDHFIRRTEGKKRVIGTLLGRF
TASGTVYVTDSFPLPHSENGEEVAVDTDYNNNMYGLHNRVNSAEELVGWY
ATGTETDLKSVIIHEFYGRECVNPVHLLVDAELSSDRFDMSAFVSTAYKI
DELALSSEFRSIPVCMKPEKAEKVGLDVLFKNRRREEGDLSSPVMASEIE
NLQKSMERLLDLLDTIGKNVDAVVAGEIEGDVTTGRFLAETLTMVPRMNA
SDFERLFGDNMRDLLMVAYLCKLTQTQLIVAEKLLCVDTTPKY*
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mRNA from alignment at tig00004442_pilon:939049..939930-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10107.t1 ID=Gchil10107.t1|Name=Gchil10107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004442_pilon:939049..939930- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCAACCGATATCTTCCTTGGCGGAGAGGATAGCGGAGTTCGTGA
GGTTCAGGTTTCTCCAGTTGTCCTATTCAATGTATTAGATCATTTCATTC
GCCGGACAGAGGGGAAAAAGCGAGTGATTGGGACGTTGTTGGGACGATTC
ACTGCATCAGGCACTGTATACGTAACTGATTCTTTTCCATTACCACATTC
TGAAAACGGTGAAGAAGTCGCAGTGGATACAGACTACAATAACAATATGT
ACGGCCTTCACAACAGGGTGAACTCAGCAGAGGAGCTTGTTGGATGGTAC
GCTACTGGAACTGAGACGGATCTTAAGTCTGTCATCATTCATGAATTTTA
TGGACGGGAGTGTGTAAATCCAGTCCATTTATTAGTGGATGCTGAGTTGT
CTAGCGACCGATTTGATATGAGTGCCTTTGTTTCAACCGCGTACAAGATC
GATGAGCTTGCTCTGAGTTCCGAATTCCGCTCCATTCCTGTTTGCATGAA
ACCAGAGAAAGCAGAAAAGGTAGGTCTCGACGTCCTTTTCAAGAACAGAC
GAAGGGAGGAAGGTGATCTCTCGTCCCCTGTTATGGCTTCCGAAATCGAA
AACCTTCAGAAATCTATGGAAAGGCTCTTAGACCTATTGGATACTATCGG
AAAAAATGTGGATGCCGTTGTCGCTGGAGAGATAGAAGGCGATGTTACAA
CCGGAAGATTTTTGGCGGAAACGTTGACAATGGTGCCAAGGATGAATGCA
TCTGATTTCGAAAGGTTATTTGGTGACAACATGCGCGATCTGCTGATGGT
CGCATATCTCTGCAAACTTACGCAAACACAACTGATTGTTGCTGAAAAGC
TGCTTTGCGTAGATACCACACCGAAGTACTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:939049..939930-

>Gchil10107.t1 ID=Gchil10107.t1|Name=Gchil10107.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00004442_pilon:939049..939930- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCAACCGATATCTTCCTTGGCGGAGAGGATAGCGGAGTTCGTGA
GGTTCAGGTTTCTCCAGTTGTCCTATTCAATGTATTAGATCATTTCATTC
GCCGGACAGAGGGGAAAAAGCGAGTGATTGGGACGTTGTTGGGACGATTC
ACTGCATCAGGCACTGTATACGTAACTGATTCTTTTCCATTACCACATTC
TGAAAACGGTGAAGAAGTCGCAGTGGATACAGACTACAATAACAATATGT
ACGGCCTTCACAACAGGGTGAACTCAGCAGAGGAGCTTGTTGGATGGTAC
GCTACTGGAACTGAGACGGATCTTAAGTCTGTCATCATTCATGAATTTTA
TGGACGGGAGTGTGTAAATCCAGTCCATTTATTAGTGGATGCTGAGTTGT
CTAGCGACCGATTTGATATGAGTGCCTTTGTTTCAACCGCGTACAAGATC
GATGAGCTTGCTCTGAGTTCCGAATTCCGCTCCATTCCTGTTTGCATGAA
ACCAGAGAAAGCAGAAAAGGTAGGTCTCGACGTCCTTTTCAAGAACAGAC
GAAGGGAGGAAGGTGATCTCTCGTCCCCTGTTATGGCTTCCGAAATCGAA
AACCTTCAGAAATCTATGGAAAGGCTCTTAGACCTATTGGATACTATCGG
AAAAAATGTGGATGCCGTTGTCGCTGGAGAGATAGAAGGCGATGTTACAA
CCGGAAGATTTTTGGCGGAAACGTTGACAATGGTGCCAAGGATGAATGCA
TCTGATTTCGAAAGGTTATTTGGTGACAACATGCGCGATCTGCTGATGGT
CGCATATCTCTGCAAACTTACGCAAACACAACTGATTGTTGCTGAAAAGC
TGCTTTGCGTAGATACCACACCGAAGTACTAG
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