Gchil10105.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10105.t1
Unique NameGchil10105.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:934591..936198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704435.1
PFAMsDUF295,F-box,RHD3
Max annot lvl2759|Eukaryota
Evalue1.13e-132
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota
DescriptionGTP binding
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10105Gchil10105Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 934591..936198 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10105.t1.stop1Gchil10105.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 934591..934593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10105.t1.CDS1Gchil10105.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 934591..936198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10105.t1.exon1Gchil10105.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 934591..936198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10105.t1.start1Gchil10105.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 936196..936198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10105.t1Gchil10105.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 934591..936198 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10105.t1 ID=Gchil10105.t1|Name=Gchil10105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=536bp
MDISSQQSVLQLVNSRGDFNSDEFEKFVIQHFQEDQTDQDTNLVTIAVLG
PRSSGKSTLANRLFGTDFDVARPFAGRGTQGCVAAVSSSNFLILDSQGSD
GRDGENQKVARVSTLALTLADALIFNLWAADLGRYEAAGYSLLRSIFTEH
IRIFQGEPVKSLIVFVIRDHDDDSPLDSLKSILMSDIESLWKDINANGAP
LSDMFKFEFVSLPHIRHRKTQFDEAIEDLSQRFCNPNHSQYLLDSEFSRK
VPIEGLYTYADIVWKDSEQDKSVELPGKKDLVAAYRCDVAYDAQQRPSLT
QLNRWTSEVDRGNTVQAFGVKASNLLDSALEKYDRDTLSHASSPIRAKKR
SELQSSLQSRVRSLFNKQILLLQNAALQRFKKILLSKVTNPMSGTVTSVA
LRTVDEWFARNAESLLVPSMRLSFRSARQEVQNALHTYGEGFANSPTAQL
QAMQQMERQAQRAPPRQRNIEFGLGLNAACRPSGFGNFQLITGYARGPHT
MQFTLVNDKDAAEQEGQGQVPFFRIQPTINTTVDL*
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spliced messenger RNA

>Gchil10105.t1 ID=Gchil10105.t1|Name=Gchil10105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00004442_pilon:934591..936198- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTTCCTCGCAGCAGTCTGTACTACAGCTTGTCAACTCACGCGG
TGATTTCAACTCAGACGAGTTCGAAAAGTTTGTCATACAGCATTTCCAAG
AGGATCAGACCGATCAGGACACCAATCTTGTCACCATAGCAGTATTGGGC
CCTCGTAGTTCGGGGAAGAGCACCTTGGCCAACCGTCTTTTTGGTACGGA
TTTTGATGTGGCTCGCCCTTTTGCCGGTCGCGGCACTCAGGGTTGCGTCG
CTGCCGTTTCTTCGTCAAATTTCCTCATTTTGGATTCACAGGGCTCAGAT
GGGCGTGACGGTGAGAATCAAAAGGTCGCTCGTGTGAGTACCTTAGCGCT
TACCCTCGCTGATGCTCTCATATTCAATTTGTGGGCTGCTGATCTTGGTC
GCTATGAGGCTGCTGGCTATTCTCTGTTGAGATCCATTTTCACAGAACAC
ATTCGTATCTTCCAGGGAGAGCCTGTCAAGTCCTTAATTGTGTTTGTAAT
TCGTGATCATGATGATGATTCTCCTCTGGATTCTCTGAAGAGTATTCTAA
TGAGTGATATTGAGTCTTTGTGGAAGGATATTAACGCAAATGGAGCACCG
CTTTCTGACATGTTTAAGTTCGAATTCGTATCTTTGCCTCACATCCGCCA
TCGTAAGACCCAATTCGACGAAGCCATCGAGGATTTATCGCAGCGCTTCT
GTAACCCGAACCACTCACAATACTTGCTGGATTCCGAATTCTCCCGAAAG
GTTCCAATAGAAGGGCTCTACACCTATGCCGATATTGTATGGAAGGATTC
TGAGCAAGACAAATCGGTCGAGCTCCCGGGAAAAAAGGACCTGGTTGCGG
CGTACAGGTGCGATGTAGCGTATGATGCGCAGCAGCGTCCGTCTTTAACT
CAGCTGAATCGCTGGACCTCCGAAGTTGACAGAGGAAACACCGTACAGGC
TTTTGGTGTGAAGGCCTCCAACTTGCTGGACTCAGCTTTGGAGAAGTACG
ACCGAGACACTTTGTCTCATGCTTCCTCTCCCATCCGCGCGAAGAAAAGA
TCAGAATTGCAATCATCGTTACAATCTCGTGTCCGTTCACTATTCAACAA
GCAAATACTCTTGTTACAGAATGCAGCACTACAGCGCTTCAAGAAAATTT
TGTTGTCCAAGGTCACGAACCCCATGTCTGGTACTGTAACATCCGTTGCA
CTACGCACTGTGGATGAATGGTTCGCTAGAAATGCCGAGAGTTTGCTTGT
GCCATCAATGCGTCTTTCATTCCGATCGGCAAGGCAGGAGGTGCAGAATG
CGCTGCATACGTATGGCGAGGGCTTTGCAAACTCCCCAACAGCGCAACTG
CAAGCAATGCAGCAAATGGAAAGGCAAGCGCAGCGTGCCCCTCCTCGACA
AAGAAATATTGAATTCGGCCTTGGACTCAATGCTGCATGTCGCCCAAGTG
GCTTTGGAAACTTTCAACTTATCACCGGGTATGCGCGCGGTCCGCATACC
ATGCAGTTCACGTTAGTTAATGACAAGGATGCCGCTGAACAAGAAGGACA
AGGTCAAGTGCCGTTCTTCCGGATTCAACCTACAATCAATACCACAGTTG
ATCTTTAA
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protein sequence of Gchil10105.t1

>Gchil10105.t1 ID=Gchil10105.t1|Name=Gchil10105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=536bp
MDISSQQSVLQLVNSRGDFNSDEFEKFVIQHFQEDQTDQDTNLVTIAVLG
PRSSGKSTLANRLFGTDFDVARPFAGRGTQGCVAAVSSSNFLILDSQGSD
GRDGENQKVARVSTLALTLADALIFNLWAADLGRYEAAGYSLLRSIFTEH
IRIFQGEPVKSLIVFVIRDHDDDSPLDSLKSILMSDIESLWKDINANGAP
LSDMFKFEFVSLPHIRHRKTQFDEAIEDLSQRFCNPNHSQYLLDSEFSRK
VPIEGLYTYADIVWKDSEQDKSVELPGKKDLVAAYRCDVAYDAQQRPSLT
QLNRWTSEVDRGNTVQAFGVKASNLLDSALEKYDRDTLSHASSPIRAKKR
SELQSSLQSRVRSLFNKQILLLQNAALQRFKKILLSKVTNPMSGTVTSVA
LRTVDEWFARNAESLLVPSMRLSFRSARQEVQNALHTYGEGFANSPTAQL
QAMQQMERQAQRAPPRQRNIEFGLGLNAACRPSGFGNFQLITGYARGPHT
MQFTLVNDKDAAEQEGQGQVPFFRIQPTINTTVDL*
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mRNA from alignment at tig00004442_pilon:934591..936198-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10105.t1 ID=Gchil10105.t1|Name=Gchil10105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00004442_pilon:934591..936198- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTTCCTCGCAGCAGTCTGTACTACAGCTTGTCAACTCACGCGG
TGATTTCAACTCAGACGAGTTCGAAAAGTTTGTCATACAGCATTTCCAAG
AGGATCAGACCGATCAGGACACCAATCTTGTCACCATAGCAGTATTGGGC
CCTCGTAGTTCGGGGAAGAGCACCTTGGCCAACCGTCTTTTTGGTACGGA
TTTTGATGTGGCTCGCCCTTTTGCCGGTCGCGGCACTCAGGGTTGCGTCG
CTGCCGTTTCTTCGTCAAATTTCCTCATTTTGGATTCACAGGGCTCAGAT
GGGCGTGACGGTGAGAATCAAAAGGTCGCTCGTGTGAGTACCTTAGCGCT
TACCCTCGCTGATGCTCTCATATTCAATTTGTGGGCTGCTGATCTTGGTC
GCTATGAGGCTGCTGGCTATTCTCTGTTGAGATCCATTTTCACAGAACAC
ATTCGTATCTTCCAGGGAGAGCCTGTCAAGTCCTTAATTGTGTTTGTAAT
TCGTGATCATGATGATGATTCTCCTCTGGATTCTCTGAAGAGTATTCTAA
TGAGTGATATTGAGTCTTTGTGGAAGGATATTAACGCAAATGGAGCACCG
CTTTCTGACATGTTTAAGTTCGAATTCGTATCTTTGCCTCACATCCGCCA
TCGTAAGACCCAATTCGACGAAGCCATCGAGGATTTATCGCAGCGCTTCT
GTAACCCGAACCACTCACAATACTTGCTGGATTCCGAATTCTCCCGAAAG
GTTCCAATAGAAGGGCTCTACACCTATGCCGATATTGTATGGAAGGATTC
TGAGCAAGACAAATCGGTCGAGCTCCCGGGAAAAAAGGACCTGGTTGCGG
CGTACAGGTGCGATGTAGCGTATGATGCGCAGCAGCGTCCGTCTTTAACT
CAGCTGAATCGCTGGACCTCCGAAGTTGACAGAGGAAACACCGTACAGGC
TTTTGGTGTGAAGGCCTCCAACTTGCTGGACTCAGCTTTGGAGAAGTACG
ACCGAGACACTTTGTCTCATGCTTCCTCTCCCATCCGCGCGAAGAAAAGA
TCAGAATTGCAATCATCGTTACAATCTCGTGTCCGTTCACTATTCAACAA
GCAAATACTCTTGTTACAGAATGCAGCACTACAGCGCTTCAAGAAAATTT
TGTTGTCCAAGGTCACGAACCCCATGTCTGGTACTGTAACATCCGTTGCA
CTACGCACTGTGGATGAATGGTTCGCTAGAAATGCCGAGAGTTTGCTTGT
GCCATCAATGCGTCTTTCATTCCGATCGGCAAGGCAGGAGGTGCAGAATG
CGCTGCATACGTATGGCGAGGGCTTTGCAAACTCCCCAACAGCGCAACTG
CAAGCAATGCAGCAAATGGAAAGGCAAGCGCAGCGTGCCCCTCCTCGACA
AAGAAATATTGAATTCGGCCTTGGACTCAATGCTGCATGTCGCCCAAGTG
GCTTTGGAAACTTTCAACTTATCACCGGGTATGCGCGCGGTCCGCATACC
ATGCAGTTCACGTTAGTTAATGACAAGGATGCCGCTGAACAAGAAGGACA
AGGTCAAGTGCCGTTCTTCCGGATTCAACCTACAATCAATACCACAGTTG
ATCTTTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:934591..936198-

>Gchil10105.t1 ID=Gchil10105.t1|Name=Gchil10105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00004442_pilon:934591..936198- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTTCCTCGCAGCAGTCTGTACTACAGCTTGTCAACTCACGCGG
TGATTTCAACTCAGACGAGTTCGAAAAGTTTGTCATACAGCATTTCCAAG
AGGATCAGACCGATCAGGACACCAATCTTGTCACCATAGCAGTATTGGGC
CCTCGTAGTTCGGGGAAGAGCACCTTGGCCAACCGTCTTTTTGGTACGGA
TTTTGATGTGGCTCGCCCTTTTGCCGGTCGCGGCACTCAGGGTTGCGTCG
CTGCCGTTTCTTCGTCAAATTTCCTCATTTTGGATTCACAGGGCTCAGAT
GGGCGTGACGGTGAGAATCAAAAGGTCGCTCGTGTGAGTACCTTAGCGCT
TACCCTCGCTGATGCTCTCATATTCAATTTGTGGGCTGCTGATCTTGGTC
GCTATGAGGCTGCTGGCTATTCTCTGTTGAGATCCATTTTCACAGAACAC
ATTCGTATCTTCCAGGGAGAGCCTGTCAAGTCCTTAATTGTGTTTGTAAT
TCGTGATCATGATGATGATTCTCCTCTGGATTCTCTGAAGAGTATTCTAA
TGAGTGATATTGAGTCTTTGTGGAAGGATATTAACGCAAATGGAGCACCG
CTTTCTGACATGTTTAAGTTCGAATTCGTATCTTTGCCTCACATCCGCCA
TCGTAAGACCCAATTCGACGAAGCCATCGAGGATTTATCGCAGCGCTTCT
GTAACCCGAACCACTCACAATACTTGCTGGATTCCGAATTCTCCCGAAAG
GTTCCAATAGAAGGGCTCTACACCTATGCCGATATTGTATGGAAGGATTC
TGAGCAAGACAAATCGGTCGAGCTCCCGGGAAAAAAGGACCTGGTTGCGG
CGTACAGGTGCGATGTAGCGTATGATGCGCAGCAGCGTCCGTCTTTAACT
CAGCTGAATCGCTGGACCTCCGAAGTTGACAGAGGAAACACCGTACAGGC
TTTTGGTGTGAAGGCCTCCAACTTGCTGGACTCAGCTTTGGAGAAGTACG
ACCGAGACACTTTGTCTCATGCTTCCTCTCCCATCCGCGCGAAGAAAAGA
TCAGAATTGCAATCATCGTTACAATCTCGTGTCCGTTCACTATTCAACAA
GCAAATACTCTTGTTACAGAATGCAGCACTACAGCGCTTCAAGAAAATTT
TGTTGTCCAAGGTCACGAACCCCATGTCTGGTACTGTAACATCCGTTGCA
CTACGCACTGTGGATGAATGGTTCGCTAGAAATGCCGAGAGTTTGCTTGT
GCCATCAATGCGTCTTTCATTCCGATCGGCAAGGCAGGAGGTGCAGAATG
CGCTGCATACGTATGGCGAGGGCTTTGCAAACTCCCCAACAGCGCAACTG
CAAGCAATGCAGCAAATGGAAAGGCAAGCGCAGCGTGCCCCTCCTCGACA
AAGAAATATTGAATTCGGCCTTGGACTCAATGCTGCATGTCGCCCAAGTG
GCTTTGGAAACTTTCAACTTATCACCGGGTATGCGCGCGGTCCGCATACC
ATGCAGTTCACGTTAGTTAATGACAAGGATGCCGCTGAACAAGAAGGACA
AGGTCAAGTGCCGTTCTTCCGGATTCAACCTACAATCAATACCACAGTTG
ATCTTTAA
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