Gchil10104.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10104.t1
Unique Name	Gchil10104.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	531

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:931287..932879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO33919
Preferred name	URI1
PFAMs	Prefoldin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K17560
GOs	GO:0000003,GO:0000122,GO:0000428,GO:0001558,GO:0003674,GO:0003682,GO:0003712,GO:0003714,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0007276,GO:0007283,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010921,GO:0010923,GO:0010941,GO:0014070,GO:0016591,GO:0019208,GO:0019212,GO:0019219,GO:0019220,GO:0019222,GO:0019953,GO:0022414,GO:0023051,GO:0023057,GO:0030234,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032870,GO:0032991,GO:0033993,GO:0035303,GO:0035305,GO:0040008,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045892,GO:0045934,GO:0045936,GO:0048232,GO:0048519,GO:0048523,GO:0048545,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051219,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0051716,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0080090,GO:0098772,GO:0140110,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue	8.07e-11
EggNOG OGs	KOG3130@1\|root,KOG3130@2759\|Eukaryota,38DAV@33154\|Opisthokonta,3BDM1@33208\|Metazoa
Description	Unconventional prefoldin RPB5
COG category	K
BRITE	ko00000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10104	Gchil10104	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 931287..932879 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10104.t1.start1	Gchil10104.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 931287..931289 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10104.t1.CDS1	Gchil10104.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 931287..932879 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10104.t1.exon1	Gchil10104.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 931287..932879 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10104.t1.stop1	Gchil10104.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 932877..932879 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10104.t1	Gchil10104.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 931287..932879 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:931287..932879+
coding sequence from alignment at tig00004442_pilon:931287..932879+

mRNA sequence

>Gchil10104.t1 ID=Gchil10104.t1|Name=Gchil10104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=531bp
MAEALTPQSALHPPQTSVHDRLLALETKQLAYRSLSHRLLQLPHKLRRRA
LVPVGPRLYLPGELVRTNEILVLLGSAGEATYFAERSAWQAHEIVRRRLG
RVERGLRELLDDVDSEFNVDESLGHSNDVGRSKAPVKSADNSPERVLVHS
ANNVAHSQVVHSCAQSAPSAHIDESQAVETGTTNQVVLSREVQPVSVLKT
KTPQPSPAKQKRRVRFSDPLIHPCLHSTPQPCFLSPPKLNTKAKKKNMAS
SSSKKEELSSEQNEEHETLVSASGHVKKAESDANAEELTKAKVMEQFRLA
VENAQRQVLDDGIVNITEVYEKDEETPSRVVLPPGFEPDKNVSFADGSDE
FLDMSGTTEEVAEGEVSRQDYFDALTEVEKESKAEEERQETEKRRNDLER
EKREFGRGFSKGFFGAAPKKRTQIEKESMSKCERTPSEIPSTQVVNSSST
SVMAGVVERKPSRKSKRRNRRPRSGTVMFPPSVPTALLRADAVGNMEIEG
LGQGEEEGEGESEGSMFRRLRDLQQRQGTV*

spliced messenger RNA

>Gchil10104.t1 ID=Gchil10104.t1|Name=Gchil10104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00004442_pilon:931287..932879+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGCCCTAACCCCCCAATCCGCGTTGCACCCGCCGCAAACTTC
CGTGCACGATCGTCTCTTAGCTTTGGAGACTAAGCAACTCGCATATCGCA
GTCTGTCGCATCGTCTGCTGCAGCTTCCGCACAAACTTCGTCGCCGCGCT
TTGGTTCCCGTCGGTCCTCGTTTGTATCTACCTGGCGAACTGGTGCGCAC
AAATGAAATTCTTGTTTTGCTGGGTTCTGCGGGCGAGGCGACGTACTTTG
CAGAACGCTCTGCGTGGCAGGCTCACGAGATTGTGCGTCGGCGGTTGGGA
AGGGTTGAGCGTGGTTTGCGCGAGTTGTTGGACGACGTTGACTCCGAGTT
CAACGTGGATGAGTCTCTCGGACACAGCAATGACGTTGGAAGAAGCAAGG
CACCTGTGAAGTCAGCTGATAACAGCCCGGAACGCGTGCTGGTTCACAGT
GCCAACAACGTGGCTCATTCTCAAGTTGTCCATAGTTGCGCTCAGTCGGC
CCCGTCTGCTCATATTGATGAAAGCCAAGCGGTCGAAACCGGCACTACAA
ACCAAGTCGTGCTTTCGAGAGAGGTGCAACCAGTTAGCGTCCTCAAGACA
AAAACACCACAACCGTCTCCGGCTAAACAAAAGAGGAGAGTCAGATTTAG
TGATCCTCTCATACATCCTTGCCTCCACTCAACACCACAACCATGTTTCC
TCTCGCCGCCAAAACTGAACACAAAGGCTAAGAAAAAGAATATGGCCTCA
TCCTCCAGCAAGAAAGAGGAGCTGTCTAGTGAGCAAAACGAAGAGCATGA
AACACTAGTTAGTGCTTCTGGGCATGTCAAAAAGGCGGAAAGTGATGCAA
ACGCTGAGGAGCTGACAAAAGCAAAAGTAATGGAGCAATTTCGATTGGCA
GTCGAGAACGCTCAGAGACAGGTGCTTGACGACGGAATCGTGAACATTAC
TGAGGTCTACGAAAAGGATGAGGAAACGCCGAGTAGAGTTGTGCTACCAC
CCGGCTTTGAGCCGGACAAGAACGTGAGTTTTGCTGATGGCAGCGACGAG
TTCTTGGATATGAGTGGTACAACCGAAGAAGTCGCTGAGGGCGAAGTTTC
TCGGCAGGATTATTTTGATGCCCTAACTGAGGTTGAAAAGGAATCAAAGG
CCGAAGAAGAACGCCAAGAGACTGAAAAGAGAAGAAACGATCTAGAACGA
GAGAAAAGGGAGTTTGGAAGGGGGTTTTCAAAGGGGTTCTTCGGAGCAGC
GCCAAAGAAACGGACGCAAATTGAAAAAGAAAGTATGTCGAAGTGTGAGA
GGACACCTAGCGAAATTCCGAGCACACAGGTGGTGAACTCAAGTTCGACA
TCGGTTATGGCTGGGGTGGTGGAGAGGAAGCCGTCTCGGAAGTCAAAACG
GCGGAATCGAAGGCCCCGCTCGGGCACAGTTATGTTTCCGCCATCGGTGC
CGACTGCGCTTCTGAGAGCAGACGCGGTGGGGAACATGGAGATTGAGGGT
CTGGGACAAGGTGAGGAGGAAGGTGAGGGAGAAAGCGAAGGGTCGATGTT
TCGAAGGCTACGGGACTTGCAGCAGAGGCAAGGCACAGTCTAG

protein sequence of Gchil10104.t1

>Gchil10104.t1 ID=Gchil10104.t1|Name=Gchil10104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=531bp
MAEALTPQSALHPPQTSVHDRLLALETKQLAYRSLSHRLLQLPHKLRRRA
LVPVGPRLYLPGELVRTNEILVLLGSAGEATYFAERSAWQAHEIVRRRLG
RVERGLRELLDDVDSEFNVDESLGHSNDVGRSKAPVKSADNSPERVLVHS
ANNVAHSQVVHSCAQSAPSAHIDESQAVETGTTNQVVLSREVQPVSVLKT
KTPQPSPAKQKRRVRFSDPLIHPCLHSTPQPCFLSPPKLNTKAKKKNMAS
SSSKKEELSSEQNEEHETLVSASGHVKKAESDANAEELTKAKVMEQFRLA
VENAQRQVLDDGIVNITEVYEKDEETPSRVVLPPGFEPDKNVSFADGSDE
FLDMSGTTEEVAEGEVSRQDYFDALTEVEKESKAEEERQETEKRRNDLER
EKREFGRGFSKGFFGAAPKKRTQIEKESMSKCERTPSEIPSTQVVNSSST
SVMAGVVERKPSRKSKRRNRRPRSGTVMFPPSVPTALLRADAVGNMEIEG
LGQGEEEGEGESEGSMFRRLRDLQQRQGTV*

mRNA from alignment at tig00004442_pilon:931287..932879+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10104.t1 ID=Gchil10104.t1|Name=Gchil10104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00004442_pilon:931287..932879+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAAGCCCTAACCCCCCAATCCGCGTTGCACCCGCCGCAAACTTC
CGTGCACGATCGTCTCTTAGCTTTGGAGACTAAGCAACTCGCATATCGCA
GTCTGTCGCATCGTCTGCTGCAGCTTCCGCACAAACTTCGTCGCCGCGCT
TTGGTTCCCGTCGGTCCTCGTTTGTATCTACCTGGCGAACTGGTGCGCAC
AAATGAAATTCTTGTTTTGCTGGGTTCTGCGGGCGAGGCGACGTACTTTG
CAGAACGCTCTGCGTGGCAGGCTCACGAGATTGTGCGTCGGCGGTTGGGA
AGGGTTGAGCGTGGTTTGCGCGAGTTGTTGGACGACGTTGACTCCGAGTT
CAACGTGGATGAGTCTCTCGGACACAGCAATGACGTTGGAAGAAGCAAGG
CACCTGTGAAGTCAGCTGATAACAGCCCGGAACGCGTGCTGGTTCACAGT
GCCAACAACGTGGCTCATTCTCAAGTTGTCCATAGTTGCGCTCAGTCGGC
CCCGTCTGCTCATATTGATGAAAGCCAAGCGGTCGAAACCGGCACTACAA
ACCAAGTCGTGCTTTCGAGAGAGGTGCAACCAGTTAGCGTCCTCAAGACA
AAAACACCACAACCGTCTCCGGCTAAACAAAAGAGGAGAGTCAGATTTAG
TGATCCTCTCATACATCCTTGCCTCCACTCAACACCACAACCATGTTTCC
TCTCGCCGCCAAAACTGAACACAAAGGCTAAGAAAAAGAATATGGCCTCA
TCCTCCAGCAAGAAAGAGGAGCTGTCTAGTGAGCAAAACGAAGAGCATGA
AACACTAGTTAGTGCTTCTGGGCATGTCAAAAAGGCGGAAAGTGATGCAA
ACGCTGAGGAGCTGACAAAAGCAAAAGTAATGGAGCAATTTCGATTGGCA
GTCGAGAACGCTCAGAGACAGGTGCTTGACGACGGAATCGTGAACATTAC
TGAGGTCTACGAAAAGGATGAGGAAACGCCGAGTAGAGTTGTGCTACCAC
CCGGCTTTGAGCCGGACAAGAACGTGAGTTTTGCTGATGGCAGCGACGAG
TTCTTGGATATGAGTGGTACAACCGAAGAAGTCGCTGAGGGCGAAGTTTC
TCGGCAGGATTATTTTGATGCCCTAACTGAGGTTGAAAAGGAATCAAAGG
CCGAAGAAGAACGCCAAGAGACTGAAAAGAGAAGAAACGATCTAGAACGA
GAGAAAAGGGAGTTTGGAAGGGGGTTTTCAAAGGGGTTCTTCGGAGCAGC
GCCAAAGAAACGGACGCAAATTGAAAAAGAAAGTATGTCGAAGTGTGAGA
GGACACCTAGCGAAATTCCGAGCACACAGGTGGTGAACTCAAGTTCGACA
TCGGTTATGGCTGGGGTGGTGGAGAGGAAGCCGTCTCGGAAGTCAAAACG
GCGGAATCGAAGGCCCCGCTCGGGCACAGTTATGTTTCCGCCATCGGTGC
CGACTGCGCTTCTGAGAGCAGACGCGGTGGGGAACATGGAGATTGAGGGT
CTGGGACAAGGTGAGGAGGAAGGTGAGGGAGAAAGCGAAGGGTCGATGTT
TCGAAGGCTACGGGACTTGCAGCAGAGGCAAGGCACAGTCTAG

Coding sequence (CDS) from alignment at tig00004442_pilon:931287..932879+

>Gchil10104.t1 ID=Gchil10104.t1|Name=Gchil10104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1593bp|location=Sequence derived from alignment at tig00004442_pilon:931287..932879+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAAGCCCTAACCCCCCAATCCGCGTTGCACCCGCCGCAAACTTC
CGTGCACGATCGTCTCTTAGCTTTGGAGACTAAGCAACTCGCATATCGCA
GTCTGTCGCATCGTCTGCTGCAGCTTCCGCACAAACTTCGTCGCCGCGCT
TTGGTTCCCGTCGGTCCTCGTTTGTATCTACCTGGCGAACTGGTGCGCAC
AAATGAAATTCTTGTTTTGCTGGGTTCTGCGGGCGAGGCGACGTACTTTG
CAGAACGCTCTGCGTGGCAGGCTCACGAGATTGTGCGTCGGCGGTTGGGA
AGGGTTGAGCGTGGTTTGCGCGAGTTGTTGGACGACGTTGACTCCGAGTT
CAACGTGGATGAGTCTCTCGGACACAGCAATGACGTTGGAAGAAGCAAGG
CACCTGTGAAGTCAGCTGATAACAGCCCGGAACGCGTGCTGGTTCACAGT
GCCAACAACGTGGCTCATTCTCAAGTTGTCCATAGTTGCGCTCAGTCGGC
CCCGTCTGCTCATATTGATGAAAGCCAAGCGGTCGAAACCGGCACTACAA
ACCAAGTCGTGCTTTCGAGAGAGGTGCAACCAGTTAGCGTCCTCAAGACA
AAAACACCACAACCGTCTCCGGCTAAACAAAAGAGGAGAGTCAGATTTAG
TGATCCTCTCATACATCCTTGCCTCCACTCAACACCACAACCATGTTTCC
TCTCGCCGCCAAAACTGAACACAAAGGCTAAGAAAAAGAATATGGCCTCA
TCCTCCAGCAAGAAAGAGGAGCTGTCTAGTGAGCAAAACGAAGAGCATGA
AACACTAGTTAGTGCTTCTGGGCATGTCAAAAAGGCGGAAAGTGATGCAA
ACGCTGAGGAGCTGACAAAAGCAAAAGTAATGGAGCAATTTCGATTGGCA
GTCGAGAACGCTCAGAGACAGGTGCTTGACGACGGAATCGTGAACATTAC
TGAGGTCTACGAAAAGGATGAGGAAACGCCGAGTAGAGTTGTGCTACCAC
CCGGCTTTGAGCCGGACAAGAACGTGAGTTTTGCTGATGGCAGCGACGAG
TTCTTGGATATGAGTGGTACAACCGAAGAAGTCGCTGAGGGCGAAGTTTC
TCGGCAGGATTATTTTGATGCCCTAACTGAGGTTGAAAAGGAATCAAAGG
CCGAAGAAGAACGCCAAGAGACTGAAAAGAGAAGAAACGATCTAGAACGA
GAGAAAAGGGAGTTTGGAAGGGGGTTTTCAAAGGGGTTCTTCGGAGCAGC
GCCAAAGAAACGGACGCAAATTGAAAAAGAAAGTATGTCGAAGTGTGAGA
GGACACCTAGCGAAATTCCGAGCACACAGGTGGTGAACTCAAGTTCGACA
TCGGTTATGGCTGGGGTGGTGGAGAGGAAGCCGTCTCGGAAGTCAAAACG
GCGGAATCGAAGGCCCCGCTCGGGCACAGTTATGTTTCCGCCATCGGTGC
CGACTGCGCTTCTGAGAGCAGACGCGGTGGGGAACATGGAGATTGAGGGT
CTGGGACAAGGTGAGGAGGAAGGTGAGGGAGAAAGCGAAGGGTCGATGTT
TCGAAGGCTACGGGACTTGCAGCAGAGGCAAGGCACAGTCTAG