Gchil10103.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10103.t1
Unique Name	Gchil10103.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	661

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:928729..930711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708079.1
PFAMs	Glyco_transf_49
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09668
KEGG Pathway	ko00515,ko01100,map00515,map01100
Evalue	3.18e-33
EggNOG OGs	KOG3765@1\|root,KOG3765@2759\|Eukaryota
Description	protein O-linked glycosylation
COG category	A
CAZy	GT49,GT8
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10103	Gchil10103	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 928729..930711 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10103.t1.stop1	Gchil10103.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 928729..928731 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10103.t1.CDS1	Gchil10103.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 928729..930711 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10103.t1.exon1	Gchil10103.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 928729..930711 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10103.t1.start1	Gchil10103.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 930709..930711 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10103.t1	Gchil10103.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 928729..930711 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:928729..930711-
coding sequence from alignment at tig00004442_pilon:928729..930711-

mRNA sequence

>Gchil10103.t1 ID=Gchil10103.t1|Name=Gchil10103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=661bp
MHSLPPLLAVVLAVLIHVFLHHYTSPPHPERYSAPQTSPPLISNKCEPLH
RFRLRPRPLGYTCIRQIQASATELTLQIRLPRPGNFTIYLQVAGVPSDPI
ASTFVSIPTLNRTQTLLYNAEGLQSDTSYVAVVEQRTTVCRIPVFTLPDN
NLVQNPSFETAAKPLFLATSFHQQKTPRAWTPFYNGGAVRFCGPFSDPAD
RIFVQIPRSGECFLLLGPDIRSPLYGFHKQNEFYYGVHQSVRIWKPSNLI
VGHAWYSTSSAVRGAKQHPCKSCADSLSLVISVITEDGHWHDGATIPLDH
SIDWTKVCAQVQSAKPISSIHIFFHFHDHSRGHVFVDDVGVSDVNISEAV
EQANCYQIEIGSPPIQKQTPILRHLVAAVRPKTSQLTVAVPLTHDRVLRL
EAMSRLYGGGPVVAAVLVRSESEARIFERIWRKKPWLRNYVDVGFVKRAA
DEPALPINALRNVAIRLTETEFVLMLDVDMTPATISFECFRNDSGKHLSI
LLPEDVRRIAVFPVFITQSHHRPARDKEELLDQLNSGVGTIYCANSQKPN
RIKRWYTTTEAVETFFTKDYEPYGIARRNLYPMYDERFSGYGFNKISWAV
AAARWGYSFLVLEDAFVTHLNHVENSWVSDINVSHYLTTWRRFFGFVAEE
GSDTDLEQRL*

spliced messenger RNA

>Gchil10103.t1 ID=Gchil10103.t1|Name=Gchil10103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00004442_pilon:928729..930711- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGCTACCGCCACTCCTGGCTGTCGTTCTCGCTGTTCTGATCCA
TGTTTTCTTGCATCACTATACCTCGCCTCCGCATCCTGAGCGATACAGTG
CGCCTCAAACTTCCCCACCTTTGATCAGCAACAAATGCGAGCCGCTGCAT
CGCTTTCGACTAAGACCTCGTCCTCTCGGCTACACCTGCATTCGACAAAT
ACAGGCCTCGGCTACGGAACTTACCTTACAAATTCGTCTCCCCCGCCCCG
GGAACTTTACCATATATCTTCAAGTAGCGGGTGTCCCTTCTGATCCCATT
GCTTCCACTTTTGTTAGCATTCCAACGCTAAACAGAACTCAGACATTGTT
GTACAACGCCGAAGGCCTGCAATCAGATACGTCTTACGTAGCTGTTGTAG
AGCAGCGAACCACAGTGTGTCGCATTCCAGTTTTCACGCTACCCGACAAT
AATCTTGTACAGAATCCTTCCTTTGAGACTGCCGCGAAACCTCTGTTTCT
AGCCACTAGTTTTCACCAACAAAAAACGCCTCGGGCCTGGACACCGTTTT
ACAATGGAGGTGCCGTGCGTTTTTGCGGGCCCTTCTCTGATCCGGCTGAT
AGGATATTTGTACAAATCCCACGCTCCGGGGAATGTTTTCTTTTGCTCGG
TCCAGACATACGAAGCCCACTATACGGTTTTCACAAGCAAAATGAATTTT
ATTACGGGGTGCATCAATCTGTAAGAATATGGAAACCTTCGAATCTTATC
GTAGGCCACGCCTGGTACTCAACTTCGAGCGCTGTACGAGGAGCGAAACA
GCATCCATGCAAAAGTTGTGCTGACTCTCTTTCGCTAGTGATTAGCGTAA
TCACCGAAGACGGTCACTGGCACGATGGCGCAACCATACCACTTGATCAC
AGCATCGACTGGACCAAGGTTTGTGCTCAAGTGCAGTCGGCAAAACCTAT
ATCATCTATTCACATCTTCTTCCATTTTCACGACCACTCCCGGGGACATG
TCTTTGTCGATGATGTGGGCGTGAGTGACGTTAATATCTCCGAAGCGGTG
GAACAAGCGAATTGTTACCAAATTGAAATAGGATCGCCTCCAATCCAAAA
ACAAACTCCGATACTGCGTCATCTAGTTGCGGCGGTGCGACCAAAAACAT
CGCAATTGACTGTTGCCGTTCCTCTCACTCATGATCGTGTACTGCGACTT
GAAGCCATGTCCCGTTTATACGGAGGTGGGCCCGTAGTAGCTGCAGTTCT
CGTTCGGTCCGAAAGTGAAGCGCGAATCTTTGAGCGAATCTGGCGGAAAA
AGCCATGGTTGCGGAATTATGTCGATGTTGGTTTTGTGAAGAGGGCAGCT
GATGAACCCGCGCTTCCGATCAATGCTCTAAGAAATGTGGCCATTCGACT
TACAGAGACAGAATTCGTGCTAATGCTGGACGTGGATATGACACCGGCCA
CTATATCTTTTGAATGCTTTCGAAACGACTCCGGCAAGCACTTGAGCATT
CTTCTTCCCGAAGATGTGAGAAGAATCGCAGTCTTTCCTGTATTTATTAC
TCAAAGTCATCACAGGCCAGCCCGAGACAAAGAAGAACTTCTGGATCAGC
TAAACTCTGGCGTAGGAACCATTTACTGTGCAAACTCACAGAAACCAAAT
CGGATTAAGCGATGGTATACCACAACCGAGGCTGTGGAAACCTTTTTTAC
CAAGGACTACGAACCCTATGGTATTGCACGGCGGAATTTGTACCCAATGT
ACGACGAACGCTTCAGTGGCTATGGTTTCAATAAAATATCGTGGGCAGTT
GCAGCTGCGAGGTGGGGATATAGCTTTTTGGTGTTGGAAGATGCATTCGT
CACACACCTCAATCACGTAGAAAACTCATGGGTATCGGACATCAATGTTT
CGCACTACCTCACAACTTGGAGACGTTTTTTCGGTTTTGTCGCAGAAGAA
GGGTCCGACACTGATCTGGAACAACGACTCTAA

protein sequence of Gchil10103.t1

>Gchil10103.t1 ID=Gchil10103.t1|Name=Gchil10103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=661bp
MHSLPPLLAVVLAVLIHVFLHHYTSPPHPERYSAPQTSPPLISNKCEPLH
RFRLRPRPLGYTCIRQIQASATELTLQIRLPRPGNFTIYLQVAGVPSDPI
ASTFVSIPTLNRTQTLLYNAEGLQSDTSYVAVVEQRTTVCRIPVFTLPDN
NLVQNPSFETAAKPLFLATSFHQQKTPRAWTPFYNGGAVRFCGPFSDPAD
RIFVQIPRSGECFLLLGPDIRSPLYGFHKQNEFYYGVHQSVRIWKPSNLI
VGHAWYSTSSAVRGAKQHPCKSCADSLSLVISVITEDGHWHDGATIPLDH
SIDWTKVCAQVQSAKPISSIHIFFHFHDHSRGHVFVDDVGVSDVNISEAV
EQANCYQIEIGSPPIQKQTPILRHLVAAVRPKTSQLTVAVPLTHDRVLRL
EAMSRLYGGGPVVAAVLVRSESEARIFERIWRKKPWLRNYVDVGFVKRAA
DEPALPINALRNVAIRLTETEFVLMLDVDMTPATISFECFRNDSGKHLSI
LLPEDVRRIAVFPVFITQSHHRPARDKEELLDQLNSGVGTIYCANSQKPN
RIKRWYTTTEAVETFFTKDYEPYGIARRNLYPMYDERFSGYGFNKISWAV
AAARWGYSFLVLEDAFVTHLNHVENSWVSDINVSHYLTTWRRFFGFVAEE
GSDTDLEQRL*

mRNA from alignment at tig00004442_pilon:928729..930711-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10103.t1 ID=Gchil10103.t1|Name=Gchil10103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00004442_pilon:928729..930711- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCGCTACCGCCACTCCTGGCTGTCGTTCTCGCTGTTCTGATCCA
TGTTTTCTTGCATCACTATACCTCGCCTCCGCATCCTGAGCGATACAGTG
CGCCTCAAACTTCCCCACCTTTGATCAGCAACAAATGCGAGCCGCTGCAT
CGCTTTCGACTAAGACCTCGTCCTCTCGGCTACACCTGCATTCGACAAAT
ACAGGCCTCGGCTACGGAACTTACCTTACAAATTCGTCTCCCCCGCCCCG
GGAACTTTACCATATATCTTCAAGTAGCGGGTGTCCCTTCTGATCCCATT
GCTTCCACTTTTGTTAGCATTCCAACGCTAAACAGAACTCAGACATTGTT
GTACAACGCCGAAGGCCTGCAATCAGATACGTCTTACGTAGCTGTTGTAG
AGCAGCGAACCACAGTGTGTCGCATTCCAGTTTTCACGCTACCCGACAAT
AATCTTGTACAGAATCCTTCCTTTGAGACTGCCGCGAAACCTCTGTTTCT
AGCCACTAGTTTTCACCAACAAAAAACGCCTCGGGCCTGGACACCGTTTT
ACAATGGAGGTGCCGTGCGTTTTTGCGGGCCCTTCTCTGATCCGGCTGAT
AGGATATTTGTACAAATCCCACGCTCCGGGGAATGTTTTCTTTTGCTCGG
TCCAGACATACGAAGCCCACTATACGGTTTTCACAAGCAAAATGAATTTT
ATTACGGGGTGCATCAATCTGTAAGAATATGGAAACCTTCGAATCTTATC
GTAGGCCACGCCTGGTACTCAACTTCGAGCGCTGTACGAGGAGCGAAACA
GCATCCATGCAAAAGTTGTGCTGACTCTCTTTCGCTAGTGATTAGCGTAA
TCACCGAAGACGGTCACTGGCACGATGGCGCAACCATACCACTTGATCAC
AGCATCGACTGGACCAAGGTTTGTGCTCAAGTGCAGTCGGCAAAACCTAT
ATCATCTATTCACATCTTCTTCCATTTTCACGACCACTCCCGGGGACATG
TCTTTGTCGATGATGTGGGCGTGAGTGACGTTAATATCTCCGAAGCGGTG
GAACAAGCGAATTGTTACCAAATTGAAATAGGATCGCCTCCAATCCAAAA
ACAAACTCCGATACTGCGTCATCTAGTTGCGGCGGTGCGACCAAAAACAT
CGCAATTGACTGTTGCCGTTCCTCTCACTCATGATCGTGTACTGCGACTT
GAAGCCATGTCCCGTTTATACGGAGGTGGGCCCGTAGTAGCTGCAGTTCT
CGTTCGGTCCGAAAGTGAAGCGCGAATCTTTGAGCGAATCTGGCGGAAAA
AGCCATGGTTGCGGAATTATGTCGATGTTGGTTTTGTGAAGAGGGCAGCT
GATGAACCCGCGCTTCCGATCAATGCTCTAAGAAATGTGGCCATTCGACT
TACAGAGACAGAATTCGTGCTAATGCTGGACGTGGATATGACACCGGCCA
CTATATCTTTTGAATGCTTTCGAAACGACTCCGGCAAGCACTTGAGCATT
CTTCTTCCCGAAGATGTGAGAAGAATCGCAGTCTTTCCTGTATTTATTAC
TCAAAGTCATCACAGGCCAGCCCGAGACAAAGAAGAACTTCTGGATCAGC
TAAACTCTGGCGTAGGAACCATTTACTGTGCAAACTCACAGAAACCAAAT
CGGATTAAGCGATGGTATACCACAACCGAGGCTGTGGAAACCTTTTTTAC
CAAGGACTACGAACCCTATGGTATTGCACGGCGGAATTTGTACCCAATGT
ACGACGAACGCTTCAGTGGCTATGGTTTCAATAAAATATCGTGGGCAGTT
GCAGCTGCGAGGTGGGGATATAGCTTTTTGGTGTTGGAAGATGCATTCGT
CACACACCTCAATCACGTAGAAAACTCATGGGTATCGGACATCAATGTTT
CGCACTACCTCACAACTTGGAGACGTTTTTTCGGTTTTGTCGCAGAAGAA
GGGTCCGACACTGATCTGGAACAACGACTCTAA

Coding sequence (CDS) from alignment at tig00004442_pilon:928729..930711-

>Gchil10103.t1 ID=Gchil10103.t1|Name=Gchil10103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1983bp|location=Sequence derived from alignment at tig00004442_pilon:928729..930711- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCGCTACCGCCACTCCTGGCTGTCGTTCTCGCTGTTCTGATCCA
TGTTTTCTTGCATCACTATACCTCGCCTCCGCATCCTGAGCGATACAGTG
CGCCTCAAACTTCCCCACCTTTGATCAGCAACAAATGCGAGCCGCTGCAT
CGCTTTCGACTAAGACCTCGTCCTCTCGGCTACACCTGCATTCGACAAAT
ACAGGCCTCGGCTACGGAACTTACCTTACAAATTCGTCTCCCCCGCCCCG
GGAACTTTACCATATATCTTCAAGTAGCGGGTGTCCCTTCTGATCCCATT
GCTTCCACTTTTGTTAGCATTCCAACGCTAAACAGAACTCAGACATTGTT
GTACAACGCCGAAGGCCTGCAATCAGATACGTCTTACGTAGCTGTTGTAG
AGCAGCGAACCACAGTGTGTCGCATTCCAGTTTTCACGCTACCCGACAAT
AATCTTGTACAGAATCCTTCCTTTGAGACTGCCGCGAAACCTCTGTTTCT
AGCCACTAGTTTTCACCAACAAAAAACGCCTCGGGCCTGGACACCGTTTT
ACAATGGAGGTGCCGTGCGTTTTTGCGGGCCCTTCTCTGATCCGGCTGAT
AGGATATTTGTACAAATCCCACGCTCCGGGGAATGTTTTCTTTTGCTCGG
TCCAGACATACGAAGCCCACTATACGGTTTTCACAAGCAAAATGAATTTT
ATTACGGGGTGCATCAATCTGTAAGAATATGGAAACCTTCGAATCTTATC
GTAGGCCACGCCTGGTACTCAACTTCGAGCGCTGTACGAGGAGCGAAACA
GCATCCATGCAAAAGTTGTGCTGACTCTCTTTCGCTAGTGATTAGCGTAA
TCACCGAAGACGGTCACTGGCACGATGGCGCAACCATACCACTTGATCAC
AGCATCGACTGGACCAAGGTTTGTGCTCAAGTGCAGTCGGCAAAACCTAT
ATCATCTATTCACATCTTCTTCCATTTTCACGACCACTCCCGGGGACATG
TCTTTGTCGATGATGTGGGCGTGAGTGACGTTAATATCTCCGAAGCGGTG
GAACAAGCGAATTGTTACCAAATTGAAATAGGATCGCCTCCAATCCAAAA
ACAAACTCCGATACTGCGTCATCTAGTTGCGGCGGTGCGACCAAAAACAT
CGCAATTGACTGTTGCCGTTCCTCTCACTCATGATCGTGTACTGCGACTT
GAAGCCATGTCCCGTTTATACGGAGGTGGGCCCGTAGTAGCTGCAGTTCT
CGTTCGGTCCGAAAGTGAAGCGCGAATCTTTGAGCGAATCTGGCGGAAAA
AGCCATGGTTGCGGAATTATGTCGATGTTGGTTTTGTGAAGAGGGCAGCT
GATGAACCCGCGCTTCCGATCAATGCTCTAAGAAATGTGGCCATTCGACT
TACAGAGACAGAATTCGTGCTAATGCTGGACGTGGATATGACACCGGCCA
CTATATCTTTTGAATGCTTTCGAAACGACTCCGGCAAGCACTTGAGCATT
CTTCTTCCCGAAGATGTGAGAAGAATCGCAGTCTTTCCTGTATTTATTAC
TCAAAGTCATCACAGGCCAGCCCGAGACAAAGAAGAACTTCTGGATCAGC
TAAACTCTGGCGTAGGAACCATTTACTGTGCAAACTCACAGAAACCAAAT
CGGATTAAGCGATGGTATACCACAACCGAGGCTGTGGAAACCTTTTTTAC
CAAGGACTACGAACCCTATGGTATTGCACGGCGGAATTTGTACCCAATGT
ACGACGAACGCTTCAGTGGCTATGGTTTCAATAAAATATCGTGGGCAGTT
GCAGCTGCGAGGTGGGGATATAGCTTTTTGGTGTTGGAAGATGCATTCGT
CACACACCTCAATCACGTAGAAAACTCATGGGTATCGGACATCAATGTTT
CGCACTACCTCACAACTTGGAGACGTTTTTTCGGTTTTGTCGCAGAAGAA
GGGTCCGACACTGATCTGGAACAACGACTCTAA