Gchil10098.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10098.t1
Unique Name	Gchil10098.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	405

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:882664..883878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706482.1
PFAMs	RRM_1,WW
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00061
KEGG ko	ko:K03942,ko:K14411
KEGG TC	3.D.1.6
KEGG Reaction	R11945
KEGG Pathway	ko00190,ko01100,ko03015,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03015,map04714,map04723,map04932,map05010,map05012,map05016
KEGG Module	M00143
Evalue	6.16e-60
EggNOG OGs	KOG4205@1\|root,KOG4205@2759\|Eukaryota
EC	1.6.5.3,1.6.99.3
Description	poly(U) RNA binding
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10098	Gchil10098	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 882664..883878 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10098.t1.start1	Gchil10098.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 882664..882666 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10098.t1.CDS1	Gchil10098.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 882664..883878 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10098.t1.exon1	Gchil10098.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 882664..883878 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10098.t1.stop1	Gchil10098.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 883876..883878 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10098.t1	Gchil10098.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 882664..883878 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:882664..883878+
coding sequence from alignment at tig00004442_pilon:882664..883878+

mRNA sequence

>Gchil10098.t1 ID=Gchil10098.t1|Name=Gchil10098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp
MASAASAPHPPPTATHKKVFVGGLSWETDEQSLHDYFARYGSVSDCVIMR
DRLTGHPRGFGFVTYDDQLVAERVASEFHELDGRQVEAKIAVPRSECVPP
SRNNAWRATKKVFIGGLPATCREAHLHAHFLPFGDIAECQVMYDHQTGNS
RGFGFVTFTSEITVDKVVDIEHEIMQKHVEVKRAEPKQALEARRGREAAG
AAALSFSSTQPASSSLHMSPQKQQPHIPHTSQTLQSHLASATSVPYASFP
SSLQSPTSLSAARSPSTQNPFHSFSPWSGAFSSGAGSSWSAVQSSSAFVT
TKMQEAASIRSSHTAAAGATSMSPPSTTIPPQSSSRVTPGAMGFFTPAQP
YSPDLAQCAYNAFCSPSAPLNSFATDLSSVIPSARTERRFHPYSTRERIE
RSYR*

spliced messenger RNA

>Gchil10098.t1 ID=Gchil10098.t1|Name=Gchil10098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00004442_pilon:882664..883878+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCAGCAGCTTCCGCCCCGCACCCCCCACCCACCGCCACCCACAA
AAAGGTCTTTGTCGGCGGCCTGTCCTGGGAGACCGACGAGCAGAGCCTGC
ACGACTATTTCGCGCGCTACGGCTCCGTGTCCGACTGCGTCATCATGAGG
GATAGGCTCACTGGCCATCCGCGCGGCTTCGGCTTTGTCACTTACGACGA
TCAGCTCGTCGCCGAGCGCGTTGCCTCCGAGTTTCACGAGTTGGACGGCC
GTCAGGTCGAGGCCAAGATAGCCGTCCCGCGTTCCGAGTGTGTCCCACCG
TCGCGCAACAACGCGTGGCGCGCCACTAAAAAGGTCTTCATCGGCGGCCT
GCCGGCCACTTGTAGAGAGGCGCACCTTCATGCCCACTTTCTTCCCTTTG
GCGATATTGCAGAGTGTCAAGTTATGTACGACCACCAGACGGGCAATTCG
AGAGGCTTTGGATTTGTCACTTTTACTTCGGAGATCACCGTTGACAAGGT
CGTCGACATCGAACATGAGATTATGCAGAAGCATGTCGAGGTCAAAAGAG
CCGAACCAAAACAAGCGCTCGAGGCGCGTCGCGGACGGGAGGCCGCTGGA
GCAGCCGCTTTGTCCTTTTCCTCAACCCAGCCCGCCTCTTCTTCGTTGCA
CATGTCCCCACAAAAACAGCAACCTCATATCCCACACACTTCGCAAACCT
TGCAATCGCATTTGGCTTCAGCTACTTCAGTTCCATACGCTTCATTCCCT
TCCAGCTTACAGAGCCCAACCTCTCTATCTGCGGCCCGTTCACCATCCAC
CCAAAATCCCTTTCATTCGTTTTCACCCTGGTCGGGTGCCTTTTCATCCG
GAGCCGGATCTAGTTGGAGTGCTGTTCAGTCATCCTCAGCCTTCGTCACA
ACCAAGATGCAGGAAGCCGCCTCTATACGAAGCTCCCATACTGCCGCTGC
TGGTGCTACATCAATGTCACCGCCATCTACAACAATTCCACCGCAATCAT
CATCTCGCGTCACACCTGGTGCGATGGGATTTTTCACGCCGGCACAACCT
TATTCTCCAGATCTTGCGCAATGTGCCTACAATGCGTTTTGTTCTCCTTC
CGCCCCGCTCAATTCGTTCGCTACTGACCTTTCAAGCGTTATACCCAGCG
CCAGAACTGAACGTCGATTTCATCCATACTCAACAAGAGAGCGAATTGAG
CGATCGTATCGATAA

protein sequence of Gchil10098.t1

>Gchil10098.t1 ID=Gchil10098.t1|Name=Gchil10098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=405bp
MASAASAPHPPPTATHKKVFVGGLSWETDEQSLHDYFARYGSVSDCVIMR
DRLTGHPRGFGFVTYDDQLVAERVASEFHELDGRQVEAKIAVPRSECVPP
SRNNAWRATKKVFIGGLPATCREAHLHAHFLPFGDIAECQVMYDHQTGNS
RGFGFVTFTSEITVDKVVDIEHEIMQKHVEVKRAEPKQALEARRGREAAG
AAALSFSSTQPASSSLHMSPQKQQPHIPHTSQTLQSHLASATSVPYASFP
SSLQSPTSLSAARSPSTQNPFHSFSPWSGAFSSGAGSSWSAVQSSSAFVT
TKMQEAASIRSSHTAAAGATSMSPPSTTIPPQSSSRVTPGAMGFFTPAQP
YSPDLAQCAYNAFCSPSAPLNSFATDLSSVIPSARTERRFHPYSTRERIE
RSYR*

mRNA from alignment at tig00004442_pilon:882664..883878+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10098.t1 ID=Gchil10098.t1|Name=Gchil10098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00004442_pilon:882664..883878+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCAGCAGCTTCCGCCCCGCACCCCCCACCCACCGCCACCCACAA
AAAGGTCTTTGTCGGCGGCCTGTCCTGGGAGACCGACGAGCAGAGCCTGC
ACGACTATTTCGCGCGCTACGGCTCCGTGTCCGACTGCGTCATCATGAGG
GATAGGCTCACTGGCCATCCGCGCGGCTTCGGCTTTGTCACTTACGACGA
TCAGCTCGTCGCCGAGCGCGTTGCCTCCGAGTTTCACGAGTTGGACGGCC
GTCAGGTCGAGGCCAAGATAGCCGTCCCGCGTTCCGAGTGTGTCCCACCG
TCGCGCAACAACGCGTGGCGCGCCACTAAAAAGGTCTTCATCGGCGGCCT
GCCGGCCACTTGTAGAGAGGCGCACCTTCATGCCCACTTTCTTCCCTTTG
GCGATATTGCAGAGTGTCAAGTTATGTACGACCACCAGACGGGCAATTCG
AGAGGCTTTGGATTTGTCACTTTTACTTCGGAGATCACCGTTGACAAGGT
CGTCGACATCGAACATGAGATTATGCAGAAGCATGTCGAGGTCAAAAGAG
CCGAACCAAAACAAGCGCTCGAGGCGCGTCGCGGACGGGAGGCCGCTGGA
GCAGCCGCTTTGTCCTTTTCCTCAACCCAGCCCGCCTCTTCTTCGTTGCA
CATGTCCCCACAAAAACAGCAACCTCATATCCCACACACTTCGCAAACCT
TGCAATCGCATTTGGCTTCAGCTACTTCAGTTCCATACGCTTCATTCCCT
TCCAGCTTACAGAGCCCAACCTCTCTATCTGCGGCCCGTTCACCATCCAC
CCAAAATCCCTTTCATTCGTTTTCACCCTGGTCGGGTGCCTTTTCATCCG
GAGCCGGATCTAGTTGGAGTGCTGTTCAGTCATCCTCAGCCTTCGTCACA
ACCAAGATGCAGGAAGCCGCCTCTATACGAAGCTCCCATACTGCCGCTGC
TGGTGCTACATCAATGTCACCGCCATCTACAACAATTCCACCGCAATCAT
CATCTCGCGTCACACCTGGTGCGATGGGATTTTTCACGCCGGCACAACCT
TATTCTCCAGATCTTGCGCAATGTGCCTACAATGCGTTTTGTTCTCCTTC
CGCCCCGCTCAATTCGTTCGCTACTGACCTTTCAAGCGTTATACCCAGCG
CCAGAACTGAACGTCGATTTCATCCATACTCAACAAGAGAGCGAATTGAG
CGATCGTATCGATAA

Coding sequence (CDS) from alignment at tig00004442_pilon:882664..883878+

>Gchil10098.t1 ID=Gchil10098.t1|Name=Gchil10098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00004442_pilon:882664..883878+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCAGCAGCTTCCGCCCCGCACCCCCCACCCACCGCCACCCACAA
AAAGGTCTTTGTCGGCGGCCTGTCCTGGGAGACCGACGAGCAGAGCCTGC
ACGACTATTTCGCGCGCTACGGCTCCGTGTCCGACTGCGTCATCATGAGG
GATAGGCTCACTGGCCATCCGCGCGGCTTCGGCTTTGTCACTTACGACGA
TCAGCTCGTCGCCGAGCGCGTTGCCTCCGAGTTTCACGAGTTGGACGGCC
GTCAGGTCGAGGCCAAGATAGCCGTCCCGCGTTCCGAGTGTGTCCCACCG
TCGCGCAACAACGCGTGGCGCGCCACTAAAAAGGTCTTCATCGGCGGCCT
GCCGGCCACTTGTAGAGAGGCGCACCTTCATGCCCACTTTCTTCCCTTTG
GCGATATTGCAGAGTGTCAAGTTATGTACGACCACCAGACGGGCAATTCG
AGAGGCTTTGGATTTGTCACTTTTACTTCGGAGATCACCGTTGACAAGGT
CGTCGACATCGAACATGAGATTATGCAGAAGCATGTCGAGGTCAAAAGAG
CCGAACCAAAACAAGCGCTCGAGGCGCGTCGCGGACGGGAGGCCGCTGGA
GCAGCCGCTTTGTCCTTTTCCTCAACCCAGCCCGCCTCTTCTTCGTTGCA
CATGTCCCCACAAAAACAGCAACCTCATATCCCACACACTTCGCAAACCT
TGCAATCGCATTTGGCTTCAGCTACTTCAGTTCCATACGCTTCATTCCCT
TCCAGCTTACAGAGCCCAACCTCTCTATCTGCGGCCCGTTCACCATCCAC
CCAAAATCCCTTTCATTCGTTTTCACCCTGGTCGGGTGCCTTTTCATCCG
GAGCCGGATCTAGTTGGAGTGCTGTTCAGTCATCCTCAGCCTTCGTCACA
ACCAAGATGCAGGAAGCCGCCTCTATACGAAGCTCCCATACTGCCGCTGC
TGGTGCTACATCAATGTCACCGCCATCTACAACAATTCCACCGCAATCAT
CATCTCGCGTCACACCTGGTGCGATGGGATTTTTCACGCCGGCACAACCT
TATTCTCCAGATCTTGCGCAATGTGCCTACAATGCGTTTTGTTCTCCTTC
CGCCCCGCTCAATTCGTTCGCTACTGACCTTTCAAGCGTTATACCCAGCG
CCAGAACTGAACGTCGATTTCATCCATACTCAACAAGAGAGCGAATTGAG
CGATCGTATCGATAA