Gchil10097.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10097.t1
Unique NameGchil10097.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:881061..881921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708568.1
Preferred nameCBR1
PFAMsFAD_binding_6,Myb_DNA-binding,NAD_binding_1
Max annot lvl2759|Eukaryota
KEGG koko:K00326,ko:K11865,ko:K12133
KEGG ReactionR00100
KEGG Pathwayko00520,ko04712,map00520,map04712
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0004128,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005886,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009505,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016491,GO:0016651,GO:0016653,GO:0019867,GO:0022900,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0051287,GO:0055114,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901265,GO:1901360,GO:1901363
Evalue3.31e-25
EggNOG OGsCOG0543@1|root,KOG0724@1|root,KOG0534@2759|Eukaryota,KOG0724@2759|Eukaryota
EC1.6.2.2
Descriptionubiquitin modification-dependent histone binding
COG categoryK
BiGG ReactioniMM904.YIL043C
BRITEko00000,ko00001,ko01000,ko01002,ko03000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10097Gchil10097Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 881061..881921 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10097.t1.stop1Gchil10097.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 881061..881063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10097.t1.CDS1Gchil10097.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 881061..881921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10097.t1.exon1Gchil10097.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 881061..881921 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10097.t1.start1Gchil10097.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 881919..881921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10097.t1Gchil10097.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 881061..881921 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10097.t1 ID=Gchil10097.t1|Name=Gchil10097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MDCFDTPAQYAYQHPMLPTELLPLELSPPPPPAPHDLSLYHLLPAHALPL
PFPLPLSLPLPLPPASCSAATHLQLCDEHEPLFESLLGCDASPVPYFSFS
STKDRIKHELEMALRAPSQPVAHSEHSFVSTQANSIVPPPPPLPPPPPPP
LPLPPPSPPPRTASCAYNGITKRRKASASKSKRTRAPARPWTEQEHERFK
QSLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPDKVAES
GRGYTLSGKPLLPDSASAKSYLTRISAPAVPLDQSD*
back to top

spliced messenger RNA

>Gchil10097.t1 ID=Gchil10097.t1|Name=Gchil10097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004442_pilon:881061..881921- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGTTTCGACACTCCCGCTCAATACGCGTATCAGCATCCAATGCT
ACCAACAGAGCTTCTACCGCTTGAGCTTTCGCCGCCTCCGCCCCCCGCTC
CCCATGACCTGTCTCTCTACCACTTGCTGCCTGCACACGCGCTTCCGCTC
CCGTTCCCGCTCCCGCTCTCGCTCCCGCTCCCGCTCCCGCCTGCCTCCTG
CAGCGCCGCCACTCACCTGCAGCTGTGCGATGAGCACGAACCGCTGTTTG
AGTCGCTTCTCGGCTGTGATGCCTCCCCCGTCCCGTACTTTTCCTTTTCC
AGCACCAAGGACAGAATCAAGCATGAACTGGAGATGGCGCTGCGAGCGCC
CTCTCAACCAGTAGCCCACTCGGAGCACAGCTTCGTGTCAACACAAGCCA
ACTCCATTGTACCGCCACCGCCACCACTACCGCCACCGCCACCGCCGCCA
CTGCCGCTGCCGCCGCCCTCGCCGCCGCCACGCACCGCATCGTGCGCTTA
CAACGGCATCACCAAACGCAGAAAGGCCAGCGCAAGCAAATCAAAGCGCA
CAAGAGCGCCTGCCCGACCGTGGACCGAACAAGAACACGAGCGCTTTAAA
CAGAGCCTGGAGCTATACGGCAGGAACTGGGAGCAATGCGCAAAGTACAT
TGGCACCAGAAGGGCCCAATTGGTGAGAAGTCACGCGCAAAAGTACTTGA
TCAAGCTATGGAAACTTGGTTTGCCGTTGCCCGACAAGGTGGCCGAAAGC
GGTCGCGGCTACACTCTATCTGGAAAGCCTCTGCTGCCGGATTCGGCATC
GGCAAAGTCGTACCTCACCAGGATATCTGCCCCGGCCGTGCCACTGGATC
AGTCCGACTGA
back to top

protein sequence of Gchil10097.t1

>Gchil10097.t1 ID=Gchil10097.t1|Name=Gchil10097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MDCFDTPAQYAYQHPMLPTELLPLELSPPPPPAPHDLSLYHLLPAHALPL
PFPLPLSLPLPLPPASCSAATHLQLCDEHEPLFESLLGCDASPVPYFSFS
STKDRIKHELEMALRAPSQPVAHSEHSFVSTQANSIVPPPPPLPPPPPPP
LPLPPPSPPPRTASCAYNGITKRRKASASKSKRTRAPARPWTEQEHERFK
QSLELYGRNWEQCAKYIGTRRAQLVRSHAQKYLIKLWKLGLPLPDKVAES
GRGYTLSGKPLLPDSASAKSYLTRISAPAVPLDQSD*
back to top

mRNA from alignment at tig00004442_pilon:881061..881921-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10097.t1 ID=Gchil10097.t1|Name=Gchil10097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004442_pilon:881061..881921- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTGTTTCGACACTCCCGCTCAATACGCGTATCAGCATCCAATGCT
ACCAACAGAGCTTCTACCGCTTGAGCTTTCGCCGCCTCCGCCCCCCGCTC
CCCATGACCTGTCTCTCTACCACTTGCTGCCTGCACACGCGCTTCCGCTC
CCGTTCCCGCTCCCGCTCTCGCTCCCGCTCCCGCTCCCGCCTGCCTCCTG
CAGCGCCGCCACTCACCTGCAGCTGTGCGATGAGCACGAACCGCTGTTTG
AGTCGCTTCTCGGCTGTGATGCCTCCCCCGTCCCGTACTTTTCCTTTTCC
AGCACCAAGGACAGAATCAAGCATGAACTGGAGATGGCGCTGCGAGCGCC
CTCTCAACCAGTAGCCCACTCGGAGCACAGCTTCGTGTCAACACAAGCCA
ACTCCATTGTACCGCCACCGCCACCACTACCGCCACCGCCACCGCCGCCA
CTGCCGCTGCCGCCGCCCTCGCCGCCGCCACGCACCGCATCGTGCGCTTA
CAACGGCATCACCAAACGCAGAAAGGCCAGCGCAAGCAAATCAAAGCGCA
CAAGAGCGCCTGCCCGACCGTGGACCGAACAAGAACACGAGCGCTTTAAA
CAGAGCCTGGAGCTATACGGCAGGAACTGGGAGCAATGCGCAAAGTACAT
TGGCACCAGAAGGGCCCAATTGGTGAGAAGTCACGCGCAAAAGTACTTGA
TCAAGCTATGGAAACTTGGTTTGCCGTTGCCCGACAAGGTGGCCGAAAGC
GGTCGCGGCTACACTCTATCTGGAAAGCCTCTGCTGCCGGATTCGGCATC
GGCAAAGTCGTACCTCACCAGGATATCTGCCCCGGCCGTGCCACTGGATC
AGTCCGACTGA
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:881061..881921-

>Gchil10097.t1 ID=Gchil10097.t1|Name=Gchil10097.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00004442_pilon:881061..881921- (Gracilaria chilensis NLEC103_M9 male)
ATGGATTGTTTCGACACTCCCGCTCAATACGCGTATCAGCATCCAATGCT
ACCAACAGAGCTTCTACCGCTTGAGCTTTCGCCGCCTCCGCCCCCCGCTC
CCCATGACCTGTCTCTCTACCACTTGCTGCCTGCACACGCGCTTCCGCTC
CCGTTCCCGCTCCCGCTCTCGCTCCCGCTCCCGCTCCCGCCTGCCTCCTG
CAGCGCCGCCACTCACCTGCAGCTGTGCGATGAGCACGAACCGCTGTTTG
AGTCGCTTCTCGGCTGTGATGCCTCCCCCGTCCCGTACTTTTCCTTTTCC
AGCACCAAGGACAGAATCAAGCATGAACTGGAGATGGCGCTGCGAGCGCC
CTCTCAACCAGTAGCCCACTCGGAGCACAGCTTCGTGTCAACACAAGCCA
ACTCCATTGTACCGCCACCGCCACCACTACCGCCACCGCCACCGCCGCCA
CTGCCGCTGCCGCCGCCCTCGCCGCCGCCACGCACCGCATCGTGCGCTTA
CAACGGCATCACCAAACGCAGAAAGGCCAGCGCAAGCAAATCAAAGCGCA
CAAGAGCGCCTGCCCGACCGTGGACCGAACAAGAACACGAGCGCTTTAAA
CAGAGCCTGGAGCTATACGGCAGGAACTGGGAGCAATGCGCAAAGTACAT
TGGCACCAGAAGGGCCCAATTGGTGAGAAGTCACGCGCAAAAGTACTTGA
TCAAGCTATGGAAACTTGGTTTGCCGTTGCCCGACAAGGTGGCCGAAAGC
GGTCGCGGCTACACTCTATCTGGAAAGCCTCTGCTGCCGGATTCGGCATC
GGCAAAGTCGTACCTCACCAGGATATCTGCCCCGGCCGTGCCACTGGATC
AGTCCGACTGA
back to top