Gchil10096.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10096.t1
Unique NameGchil10096.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:880164..880580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO46541
PFAMsEF-hand_1,EF-hand_5,EF-hand_7
Max annot lvl33208|Metazoa
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0006928,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016459,GO:0016461,GO:0017022,GO:0030029,GO:0030048,GO:0031476,GO:0032028,GO:0032036,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0046872,GO:0070853,GO:0070854,GO:0070855,GO:0070864,GO:0070865
Evalue2.49e-05
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,38ETU@33154|Opisthokonta,3BAEQ@33208|Metazoa
Descriptioncalcium ion binding
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10096Gchil10096Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 880164..880580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10096.t1Gchil10096.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 880164..880580 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10096.t1.stop1Gchil10096.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 880164..880166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10096.t1.CDS1Gchil10096.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 880164..880179 -
Gchil10096.t1.CDS2Gchil10096.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 880260..880420 -
Gchil10096.t1.CDS3Gchil10096.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 880497..880580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10096.t1.exon1Gchil10096.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 880164..880179 -
Gchil10096.t1.exon2Gchil10096.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 880260..880420 -
Gchil10096.t1.exon3Gchil10096.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 880497..880580 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10096.t1.intron1Gchil10096.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 880180..880259 -
Gchil10096.t1.intron2Gchil10096.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 880421..880496 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10096.t1.start1Gchil10096.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 880578..880580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10096.t1 ID=Gchil10096.t1|Name=Gchil10096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=87bp
MPVFRKCVLQVFNKFDSNKNGSIDSNELTVAMCHLHYNLARYCPGLTQPP
TSDSISELLRKHDKDSSSNLTQQEFFDMAVKCIGTL*
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spliced messenger RNA

>Gchil10096.t1 ID=Gchil10096.t1|Name=Gchil10096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=261bp|location=Sequence derived from alignment at tig00004442_pilon:880164..880580- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTGTTCCGGAAGTGCGTGCTGCAGGTGTTCAACAAGTTCGATTC
CAACAAAAACGGAAGCATAGATTCCAACGAGTTGACGGTTGCAATGTGTC
ATCTTCACTACAACCTGGCGCGCTATTGCCCCGGTCTGACGCAACCGCCC
ACTTCCGATTCCATCTCCGAGCTGCTTCGCAAGCACGACAAGGACTCCTC
CTCCAATCTCACGCAACAGGAGTTTTTCGACATGGCTGTCAAGTGCATCG
GCACTTTATGA
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protein sequence of Gchil10096.t1

>Gchil10096.t1 ID=Gchil10096.t1|Name=Gchil10096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=87bp
MPVFRKCVLQVFNKFDSNKNGSIDSNELTVAMCHLHYNLARYCPGLTQPP
TSDSISELLRKHDKDSSSNLTQQEFFDMAVKCIGTL*
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mRNA from alignment at tig00004442_pilon:880164..880580-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10096.t1 ID=Gchil10096.t1|Name=Gchil10096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=417bp|location=Sequence derived from alignment at tig00004442_pilon:880164..880580- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTGTTCCGGAAGTGCGTGCTGCAGGTGTTCAACAAGTTCGATTC
CAACAAAAACGGAAGCATAGATTCCAACGAGTTGGTACGTGCCACATTAA
GCGATCTCCGCCTGCCATCTCGTCGCAACGCATCGAGCTAACCACCGTCA
TGCGCTACAGACGGTTGCAATGTGTCATCTTCACTACAACCTGGCGCGCT
ATTGCCCCGGTCTGACGCAACCGCCCACTTCCGATTCCATCTCCGAGCTG
CTTCGCAAGCACGACAAGGACTCCTCCTCCAATCTCACGCAACAGGAGTT
TTTCGACATGGCTGTCAAGTGGTTCGATCAACATGGAGCGCAATTTATCC
AACAACTATTTTTCACATCGCTGTTGTCAATGGTGGTAATCCCGAGCGCA
GCATCGGCACTTTATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:880164..880580-

>Gchil10096.t1 ID=Gchil10096.t1|Name=Gchil10096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=261bp|location=Sequence derived from alignment at tig00004442_pilon:880164..880580- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTGTTCCGGAAGTGCGTGCTGCAGGTGTTCAACAAGTTCGATTC
CAACAAAAACGGAAGCATAGATTCCAACGAGTTGACGGTTGCAATGTGTC
ATCTTCACTACAACCTGGCGCGCTATTGCCCCGGTCTGACGCAACCGCCC
ACTTCCGATTCCATCTCCGAGCTGCTTCGCAAGCACGACAAGGACTCCTC
CTCCAATCTCACGCAACAGGAGTTTTTCGACATGGCTGTCAAGTGCATCG
GCACTTTATGA
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