Gchil10091.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10091.t1
Unique NameGchil10091.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:859150..859762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10091Gchil10091Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 859150..859762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10091.t1Gchil10091.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 859150..859762 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10091.t1.stop1Gchil10091.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 859150..859152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10091.t1.CDS1Gchil10091.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 859150..859361 -
Gchil10091.t1.CDS2Gchil10091.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 859431..859652 -
Gchil10091.t1.CDS3Gchil10091.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 859735..859762 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10091.t1.exon1Gchil10091.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 859150..859361 -
Gchil10091.t1.exon2Gchil10091.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 859431..859652 -
Gchil10091.t1.exon3Gchil10091.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 859735..859762 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10091.t1.intron1Gchil10091.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 859362..859430 -
Gchil10091.t1.intron2Gchil10091.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 859653..859734 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10091.t1.start1Gchil10091.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 859760..859762 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10091.t1 ID=Gchil10091.t1|Name=Gchil10091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=154bp
MSHSSQNTKVEYTERRETNVAAKMANVWEQRIGSGKVHNNKPDGSSPSSI
VKSSGSDVNREAGFVHAGSRKPLSRTNTEKIVKNYERMASLHKQESKNSF
SPAARRASSVTSSGKGESGTSRKNIDDVIERIRSRMSEVDRDLRELKSMV
SDL*
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spliced messenger RNA

>Gchil10091.t1 ID=Gchil10091.t1|Name=Gchil10091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00004442_pilon:859150..859762- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCATTCTTCTCAGAATACGAAGGTCGAATATACTGAGAGGCGCGA
AACGAACGTGGCTGCGAAGATGGCTAACGTGTGGGAGCAGCGAATTGGCT
CCGGGAAGGTTCATAATAACAAGCCGGATGGGAGTTCTCCTAGTTCAATC
GTTAAGTCTTCCGGTTCTGATGTGAATCGCGAAGCCGGGTTTGTACATGC
AGGTTCAAGGAAACCGTTGTCGAGAACAAATACGGAGAAAATTGTCAAAA
ATTATGAACGAATGGCCAGTCTGCATAAACAGGAATCGAAGAACAGCTTT
TCTCCGGCAGCGCGAAGAGCTAGTTCTGTGACGAGCAGTGGTAAAGGTGA
AAGTGGTACATCAAGGAAAAACATTGACGATGTCATTGAGAGGATTCGCT
CACGCATGAGTGAGGTGGACAGGGACCTTCGTGAACTTAAGTCGATGGTG
TCTGATCTTTAG
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protein sequence of Gchil10091.t1

>Gchil10091.t1 ID=Gchil10091.t1|Name=Gchil10091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MSHSSQNTKVEYTERRETNVAAKMANVWEQRIGSGKVHNNKPDGSSPSSI
VKSSGSDVNREAGFVHAGSRKPLSRTNTEKIVKNYERMASLHKQESKNSF
SPAARRASSVTSSGKGESGTSRKNIDDVIERIRSRMSEVDRDLRELKSMV
SDL*
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mRNA from alignment at tig00004442_pilon:859150..859762-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10091.t1 ID=Gchil10091.t1|Name=Gchil10091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=613bp|location=Sequence derived from alignment at tig00004442_pilon:859150..859762- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCATTCTTCTCAGAATACGAAGGGTATGTGTGTTTTTCTTTCAGT
TGCAAATGGATTCTACTGTGACGTAGCGAGCAGTAACTAACGAGCTCTAT
TCTGCTGCAGTCGAATATACTGAGAGGCGCGAAACGAACGTGGCTGCGAA
GATGGCTAACGTGTGGGAGCAGCGAATTGGCTCCGGGAAGGTTCATAATA
ACAAGCCGGATGGGAGTTCTCCTAGTTCAATCGTTAAGTCTTCCGGTTCT
GATGTGAATCGCGAAGCCGGGTTTGTACATGCAGGTTCAAGGAAACCGTT
GTCGAGAACAAATACGGAGAAAATTGTCAAAAGTATGTCTCTACATGTTG
CCCGGCTTGTTGAAGGTGATAAAAGATTCTAACTGTGCTGTGCGAGAACA
GATTATGAACGAATGGCCAGTCTGCATAAACAGGAATCGAAGAACAGCTT
TTCTCCGGCAGCGCGAAGAGCTAGTTCTGTGACGAGCAGTGGTAAAGGTG
AAAGTGGTACATCAAGGAAAAACATTGACGATGTCATTGAGAGGATTCGC
TCACGCATGAGTGAGGTGGACAGGGACCTTCGTGAACTTAAGTCGATGGT
GTCTGATCTTTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:859150..859762-

>Gchil10091.t1 ID=Gchil10091.t1|Name=Gchil10091.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00004442_pilon:859150..859762- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCATTCTTCTCAGAATACGAAGGTCGAATATACTGAGAGGCGCGA
AACGAACGTGGCTGCGAAGATGGCTAACGTGTGGGAGCAGCGAATTGGCT
CCGGGAAGGTTCATAATAACAAGCCGGATGGGAGTTCTCCTAGTTCAATC
GTTAAGTCTTCCGGTTCTGATGTGAATCGCGAAGCCGGGTTTGTACATGC
AGGTTCAAGGAAACCGTTGTCGAGAACAAATACGGAGAAAATTGTCAAAA
ATTATGAACGAATGGCCAGTCTGCATAAACAGGAATCGAAGAACAGCTTT
TCTCCGGCAGCGCGAAGAGCTAGTTCTGTGACGAGCAGTGGTAAAGGTGA
AAGTGGTACATCAAGGAAAAACATTGACGATGTCATTGAGAGGATTCGCT
CACGCATGAGTGAGGTGGACAGGGACCTTCGTGAACTTAAGTCGATGGTG
TCTGATCTTTAG
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