Gchil10090.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10090.t1
Unique NameGchil10090.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:857612..858304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10090Gchil10090Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 857612..858304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10090.t1Gchil10090.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 857612..858304 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10090.t1.stop1Gchil10090.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 857612..857614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10090.t1.CDS1Gchil10090.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 857612..858207 -
Gchil10090.t1.CDS2Gchil10090.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 858295..858304 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10090.t1.exon1Gchil10090.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 857612..858207 -
Gchil10090.t1.exon2Gchil10090.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 858295..858304 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10090.t1.intron1Gchil10090.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 858208..858294 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10090.t1.start1Gchil10090.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 858302..858304 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10090.t1 ID=Gchil10090.t1|Name=Gchil10090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp
MTETQSSASRLRDLLNKFEGVRPPSPPKKERIVSGLDPKRGPLSSEAVSA
REASQNILSSQSAQAEQAAKPKRYVPRIAATDSDEVRDLKRAILAKEQEI
TAVCTQLKAMADRVDRALEVFLASEIENEEQAVQKTPDQRVKAFTVDATK
AVDGVVEKPTKTVGSSPTSLEAILAAARSGKIRSTGGGEKPKYSKLLRDM
K*
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spliced messenger RNA

>Gchil10090.t1 ID=Gchil10090.t1|Name=Gchil10090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00004442_pilon:857612..858304- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAGACACAAAGCTCTGCATCACGTTTGCGCGATTTACTCAACAA
GTTTGAAGGAGTACGTCCTCCATCTCCACCAAAGAAAGAACGTATAGTAA
GCGGATTGGACCCCAAGCGTGGTCCTTTATCTAGCGAAGCGGTTTCTGCA
AGAGAGGCCAGCCAAAACATTCTTTCCTCACAATCAGCCCAAGCCGAGCA
AGCTGCGAAGCCGAAGAGATATGTCCCTCGCATCGCAGCTACAGACTCCG
ATGAAGTACGCGACTTGAAGCGAGCTATTCTCGCGAAAGAGCAGGAAATA
ACTGCTGTATGCACCCAGCTCAAAGCCATGGCTGATAGAGTTGATCGCGC
GCTTGAGGTTTTTCTAGCTTCTGAAATCGAAAACGAAGAGCAGGCTGTGC
AAAAGACACCAGATCAGAGAGTGAAAGCGTTTACTGTCGATGCCACGAAA
GCTGTGGATGGAGTTGTTGAAAAGCCAACGAAAACTGTTGGTTCTTCTCC
GACATCCCTGGAGGCTATTCTTGCTGCTGCCAGAAGTGGCAAAATTCGCA
GCACAGGAGGTGGCGAAAAGCCCAAGTATTCTAAGCTTTTACGCGATATG
AAGTAA
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protein sequence of Gchil10090.t1

>Gchil10090.t1 ID=Gchil10090.t1|Name=Gchil10090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MTETQSSASRLRDLLNKFEGVRPPSPPKKERIVSGLDPKRGPLSSEAVSA
REASQNILSSQSAQAEQAAKPKRYVPRIAATDSDEVRDLKRAILAKEQEI
TAVCTQLKAMADRVDRALEVFLASEIENEEQAVQKTPDQRVKAFTVDATK
AVDGVVEKPTKTVGSSPTSLEAILAAARSGKIRSTGGGEKPKYSKLLRDM
K*
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mRNA from alignment at tig00004442_pilon:857612..858304-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10090.t1 ID=Gchil10090.t1|Name=Gchil10090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004442_pilon:857612..858304- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGAGAGTAAGTGAATGCAACTCCTTTCTTGTGAATTCGGCTTGAT
TATACGGCCGCTGCTAACATTCAGGTGTTTCCTGCCGTCCTCAAAAGCAC
AAAGCTCTGCATCACGTTTGCGCGATTTACTCAACAAGTTTGAAGGAGTA
CGTCCTCCATCTCCACCAAAGAAAGAACGTATAGTAAGCGGATTGGACCC
CAAGCGTGGTCCTTTATCTAGCGAAGCGGTTTCTGCAAGAGAGGCCAGCC
AAAACATTCTTTCCTCACAATCAGCCCAAGCCGAGCAAGCTGCGAAGCCG
AAGAGATATGTCCCTCGCATCGCAGCTACAGACTCCGATGAAGTACGCGA
CTTGAAGCGAGCTATTCTCGCGAAAGAGCAGGAAATAACTGCTGTATGCA
CCCAGCTCAAAGCCATGGCTGATAGAGTTGATCGCGCGCTTGAGGTTTTT
CTAGCTTCTGAAATCGAAAACGAAGAGCAGGCTGTGCAAAAGACACCAGA
TCAGAGAGTGAAAGCGTTTACTGTCGATGCCACGAAAGCTGTGGATGGAG
TTGTTGAAAAGCCAACGAAAACTGTTGGTTCTTCTCCGACATCCCTGGAG
GCTATTCTTGCTGCTGCCAGAAGTGGCAAAATTCGCAGCACAGGAGGTGG
CGAAAAGCCCAAGTATTCTAAGCTTTTACGCGATATGAAGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:857612..858304-

>Gchil10090.t1 ID=Gchil10090.t1|Name=Gchil10090.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00004442_pilon:857612..858304- (Gracilaria chilensis NLEC103_M9 male)
ATGACGGAGACACAAAGCTCTGCATCACGTTTGCGCGATTTACTCAACAA
GTTTGAAGGAGTACGTCCTCCATCTCCACCAAAGAAAGAACGTATAGTAA
GCGGATTGGACCCCAAGCGTGGTCCTTTATCTAGCGAAGCGGTTTCTGCA
AGAGAGGCCAGCCAAAACATTCTTTCCTCACAATCAGCCCAAGCCGAGCA
AGCTGCGAAGCCGAAGAGATATGTCCCTCGCATCGCAGCTACAGACTCCG
ATGAAGTACGCGACTTGAAGCGAGCTATTCTCGCGAAAGAGCAGGAAATA
ACTGCTGTATGCACCCAGCTCAAAGCCATGGCTGATAGAGTTGATCGCGC
GCTTGAGGTTTTTCTAGCTTCTGAAATCGAAAACGAAGAGCAGGCTGTGC
AAAAGACACCAGATCAGAGAGTGAAAGCGTTTACTGTCGATGCCACGAAA
GCTGTGGATGGAGTTGTTGAAAAGCCAACGAAAACTGTTGGTTCTTCTCC
GACATCCCTGGAGGCTATTCTTGCTGCTGCCAGAAGTGGCAAAATTCGCA
GCACAGGAGGTGGCGAAAAGCCCAAGTATTCTAAGCTTTTACGCGATATG
AAGTAA
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