Gchil10089.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10089.t1
Unique NameGchil10089.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:856014..857318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH121CT
Preferred nameCD
PFAMsCys_Met_Meta_PP
Max annot lvl2759|Eukaryota
KEGG rclassRC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303
KEGG koko:K01760
KEGG ReactionR00782,R01286,R02408,R04941
KEGG Pathwayko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230
KEGG ModuleM00017
GOsGO:0000096,GO:0000098,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0006082,GO:0006090,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006520,GO:0006534,GO:0006725,GO:0006790,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009093,GO:0009987,GO:0016054,GO:0016829,GO:0016846,GO:0019448,GO:0019450,GO:0019752,GO:0032787,GO:0033554,GO:0034641,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044273,GO:0044281,GO:0044282,GO:0046395,GO:0046439,GO:0046483,GO:0047804,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1990414
Evalue1.83e-187
EggNOG OGsCOG0626@1|root,KOG0053@2759|Eukaryota
EC4.4.1.8
Descriptioncystathionine gamma-synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10089Gchil10089Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 856014..857318 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10089.t1.start1Gchil10089.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 856014..856016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10089.t1.CDS1Gchil10089.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 856014..857318 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10089.t1.exon1Gchil10089.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 856014..857318 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10089.t1.stop1Gchil10089.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 857316..857318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10089.t1Gchil10089.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 856014..857318 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10089.t1 ID=Gchil10089.t1|Name=Gchil10089.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MSQEAPTSVKADPDPSSHSTLRVSGKNLELSHVNMDTRIVHGGVHKDEWT
TDPLKRSVVNPPVYHASTVVFPNVAALRFAASDWPFTGMWYGRHGNPTTF
ALEEAFATLEGADNACITSSGVAAVNAALLAFVQSGDHVLITDAVYDPTR
SFCDVFLKRFGVGTTYFSPTSSADQVCDLIRSNTKLILVESPASLSFEVM
DVSAIAELAHAHNLKVLIDNTWGPTLFAPFENGCDVSINAATKYIGGHSD
LMMGIIAAKDRETYRAIKTSVVQLGCPPGSDDAYLALRGLRTLGVRLRQH
EKSALRIAKWLESRPEVLRVMHPALESHPQHELFKRQFKGSSGLFGFQLK
EGFSQKSMDSMLDGMKLHSMGFSWGGFESLLMQTNINSYRTIDKWKYGGG
HGQTMRIHVGLEDVNDLINDLDEGFERLNRLNKT*
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spliced messenger RNA

>Gchil10089.t1 ID=Gchil10089.t1|Name=Gchil10089.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004442_pilon:856014..857318+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAAGAAGCTCCAACTTCGGTGAAAGCGGACCCAGATCCATCATC
ACATTCCACATTGCGCGTTTCCGGAAAGAACCTTGAACTGTCGCATGTGA
ATATGGATACCCGTATTGTCCACGGCGGAGTGCATAAAGATGAGTGGACG
ACCGATCCACTCAAGCGGTCTGTTGTCAATCCACCTGTTTATCATGCATC
AACAGTCGTGTTTCCCAACGTGGCAGCACTTCGTTTCGCTGCTTCAGATT
GGCCATTCACTGGAATGTGGTACGGACGACATGGAAACCCGACCACTTTT
GCACTGGAAGAAGCCTTTGCTACTCTAGAAGGAGCTGACAACGCTTGCAT
TACGTCCTCAGGTGTCGCCGCTGTTAACGCGGCGTTATTGGCATTTGTGC
AATCTGGTGATCACGTTCTTATCACCGATGCCGTCTATGATCCAACTAGA
TCTTTTTGCGATGTTTTCTTGAAGCGCTTCGGCGTTGGCACGACCTATTT
TTCACCAACTTCCTCTGCAGACCAAGTTTGTGATCTGATAAGAAGTAACA
CGAAGCTTATTCTTGTAGAATCCCCTGCAAGTCTATCGTTTGAAGTGATG
GATGTTTCGGCTATCGCGGAACTTGCTCATGCTCACAACCTGAAGGTGCT
GATTGACAACACATGGGGCCCAACTCTCTTCGCCCCTTTTGAAAATGGAT
GTGACGTATCTATCAACGCTGCGACAAAGTACATTGGTGGTCACTCGGAT
CTCATGATGGGTATCATCGCTGCGAAAGACAGGGAGACATATCGTGCCAT
AAAGACATCAGTCGTGCAACTGGGATGTCCCCCTGGTTCAGACGATGCCT
ACTTGGCTTTGCGAGGTCTCCGAACGCTTGGAGTTCGGCTTAGGCAACAC
GAGAAAAGTGCACTTAGAATAGCGAAGTGGCTTGAAAGTCGCCCCGAAGT
TCTGCGGGTGATGCATCCGGCTTTAGAAAGCCATCCACAACATGAATTGT
TTAAAAGACAGTTTAAGGGCTCCTCAGGGCTGTTCGGATTTCAGCTAAAG
GAAGGCTTTTCGCAGAAATCAATGGATAGTATGCTCGACGGGATGAAGCT
ACACTCAATGGGCTTTTCATGGGGTGGATTCGAGAGCCTTCTCATGCAGA
CTAACATTAACTCCTACAGAACGATCGACAAGTGGAAATACGGGGGTGGA
CACGGACAAACGATGCGAATTCACGTAGGATTGGAGGATGTCAATGATCT
CATTAACGATCTTGATGAAGGTTTTGAACGGTTAAATAGGTTGAACAAAA
CATAA
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protein sequence of Gchil10089.t1

>Gchil10089.t1 ID=Gchil10089.t1|Name=Gchil10089.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MSQEAPTSVKADPDPSSHSTLRVSGKNLELSHVNMDTRIVHGGVHKDEWT
TDPLKRSVVNPPVYHASTVVFPNVAALRFAASDWPFTGMWYGRHGNPTTF
ALEEAFATLEGADNACITSSGVAAVNAALLAFVQSGDHVLITDAVYDPTR
SFCDVFLKRFGVGTTYFSPTSSADQVCDLIRSNTKLILVESPASLSFEVM
DVSAIAELAHAHNLKVLIDNTWGPTLFAPFENGCDVSINAATKYIGGHSD
LMMGIIAAKDRETYRAIKTSVVQLGCPPGSDDAYLALRGLRTLGVRLRQH
EKSALRIAKWLESRPEVLRVMHPALESHPQHELFKRQFKGSSGLFGFQLK
EGFSQKSMDSMLDGMKLHSMGFSWGGFESLLMQTNINSYRTIDKWKYGGG
HGQTMRIHVGLEDVNDLINDLDEGFERLNRLNKT*
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mRNA from alignment at tig00004442_pilon:856014..857318+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10089.t1 ID=Gchil10089.t1|Name=Gchil10089.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004442_pilon:856014..857318+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAAGAAGCTCCAACTTCGGTGAAAGCGGACCCAGATCCATCATC
ACATTCCACATTGCGCGTTTCCGGAAAGAACCTTGAACTGTCGCATGTGA
ATATGGATACCCGTATTGTCCACGGCGGAGTGCATAAAGATGAGTGGACG
ACCGATCCACTCAAGCGGTCTGTTGTCAATCCACCTGTTTATCATGCATC
AACAGTCGTGTTTCCCAACGTGGCAGCACTTCGTTTCGCTGCTTCAGATT
GGCCATTCACTGGAATGTGGTACGGACGACATGGAAACCCGACCACTTTT
GCACTGGAAGAAGCCTTTGCTACTCTAGAAGGAGCTGACAACGCTTGCAT
TACGTCCTCAGGTGTCGCCGCTGTTAACGCGGCGTTATTGGCATTTGTGC
AATCTGGTGATCACGTTCTTATCACCGATGCCGTCTATGATCCAACTAGA
TCTTTTTGCGATGTTTTCTTGAAGCGCTTCGGCGTTGGCACGACCTATTT
TTCACCAACTTCCTCTGCAGACCAAGTTTGTGATCTGATAAGAAGTAACA
CGAAGCTTATTCTTGTAGAATCCCCTGCAAGTCTATCGTTTGAAGTGATG
GATGTTTCGGCTATCGCGGAACTTGCTCATGCTCACAACCTGAAGGTGCT
GATTGACAACACATGGGGCCCAACTCTCTTCGCCCCTTTTGAAAATGGAT
GTGACGTATCTATCAACGCTGCGACAAAGTACATTGGTGGTCACTCGGAT
CTCATGATGGGTATCATCGCTGCGAAAGACAGGGAGACATATCGTGCCAT
AAAGACATCAGTCGTGCAACTGGGATGTCCCCCTGGTTCAGACGATGCCT
ACTTGGCTTTGCGAGGTCTCCGAACGCTTGGAGTTCGGCTTAGGCAACAC
GAGAAAAGTGCACTTAGAATAGCGAAGTGGCTTGAAAGTCGCCCCGAAGT
TCTGCGGGTGATGCATCCGGCTTTAGAAAGCCATCCACAACATGAATTGT
TTAAAAGACAGTTTAAGGGCTCCTCAGGGCTGTTCGGATTTCAGCTAAAG
GAAGGCTTTTCGCAGAAATCAATGGATAGTATGCTCGACGGGATGAAGCT
ACACTCAATGGGCTTTTCATGGGGTGGATTCGAGAGCCTTCTCATGCAGA
CTAACATTAACTCCTACAGAACGATCGACAAGTGGAAATACGGGGGTGGA
CACGGACAAACGATGCGAATTCACGTAGGATTGGAGGATGTCAATGATCT
CATTAACGATCTTGATGAAGGTTTTGAACGGTTAAATAGGTTGAACAAAA
CATAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:856014..857318+

>Gchil10089.t1 ID=Gchil10089.t1|Name=Gchil10089.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004442_pilon:856014..857318+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCAAGAAGCTCCAACTTCGGTGAAAGCGGACCCAGATCCATCATC
ACATTCCACATTGCGCGTTTCCGGAAAGAACCTTGAACTGTCGCATGTGA
ATATGGATACCCGTATTGTCCACGGCGGAGTGCATAAAGATGAGTGGACG
ACCGATCCACTCAAGCGGTCTGTTGTCAATCCACCTGTTTATCATGCATC
AACAGTCGTGTTTCCCAACGTGGCAGCACTTCGTTTCGCTGCTTCAGATT
GGCCATTCACTGGAATGTGGTACGGACGACATGGAAACCCGACCACTTTT
GCACTGGAAGAAGCCTTTGCTACTCTAGAAGGAGCTGACAACGCTTGCAT
TACGTCCTCAGGTGTCGCCGCTGTTAACGCGGCGTTATTGGCATTTGTGC
AATCTGGTGATCACGTTCTTATCACCGATGCCGTCTATGATCCAACTAGA
TCTTTTTGCGATGTTTTCTTGAAGCGCTTCGGCGTTGGCACGACCTATTT
TTCACCAACTTCCTCTGCAGACCAAGTTTGTGATCTGATAAGAAGTAACA
CGAAGCTTATTCTTGTAGAATCCCCTGCAAGTCTATCGTTTGAAGTGATG
GATGTTTCGGCTATCGCGGAACTTGCTCATGCTCACAACCTGAAGGTGCT
GATTGACAACACATGGGGCCCAACTCTCTTCGCCCCTTTTGAAAATGGAT
GTGACGTATCTATCAACGCTGCGACAAAGTACATTGGTGGTCACTCGGAT
CTCATGATGGGTATCATCGCTGCGAAAGACAGGGAGACATATCGTGCCAT
AAAGACATCAGTCGTGCAACTGGGATGTCCCCCTGGTTCAGACGATGCCT
ACTTGGCTTTGCGAGGTCTCCGAACGCTTGGAGTTCGGCTTAGGCAACAC
GAGAAAAGTGCACTTAGAATAGCGAAGTGGCTTGAAAGTCGCCCCGAAGT
TCTGCGGGTGATGCATCCGGCTTTAGAAAGCCATCCACAACATGAATTGT
TTAAAAGACAGTTTAAGGGCTCCTCAGGGCTGTTCGGATTTCAGCTAAAG
GAAGGCTTTTCGCAGAAATCAATGGATAGTATGCTCGACGGGATGAAGCT
ACACTCAATGGGCTTTTCATGGGGTGGATTCGAGAGCCTTCTCATGCAGA
CTAACATTAACTCCTACAGAACGATCGACAAGTGGAAATACGGGGGTGGA
CACGGACAAACGATGCGAATTCACGTAGGATTGGAGGATGTCAATGATCT
CATTAACGATCTTGATGAAGGTTTTGAACGGTTAAATAGGTTGAACAAAA
CATAA
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