Gchil10087.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10087.t1
Unique Name	Gchil10087.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:758949..760697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10087	Gchil10087	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 758949..760697 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10087.t1.start1	Gchil10087.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 758949..758951 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10087.t1.CDS1	Gchil10087.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 758949..760697 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10087.t1.exon1	Gchil10087.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 758949..760697 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10087.t1.stop1	Gchil10087.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 760695..760697 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10087.t1	Gchil10087.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 758949..760697 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:758949..760697+
coding sequence from alignment at tig00004442_pilon:758949..760697+

mRNA sequence

>Gchil10087.t1 ID=Gchil10087.t1|Name=Gchil10087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=583bp
MLRFAKFRRRGSSDVRMPPFEPESHPSNQLPAETADLPALDGKRSVEVSG
AKKSIRSLFKQRPRQFPKQSADEVSVPSSINSTSPPSATASQAPGPDSVL
PVLTSEEKRAKDARRKARRAERERRELEWNEENRERRNKTVITGVSFDPL
PPLSDFDSASEDERESPSGEDGPNNFGQQQSASSAIITSQEAPHLDIAAA
TIPRSQNDDARLAEMFGAQALLLAPYSQRSTVPTASSDNNSNNDPSGMNA
TPTKPAETAFPKASDLIHPPKQPAPIGWGDTYDTVPSQPLYGTPSHLVQR
GPMAIEAALAGKISRGRELALLAIEQEEKGNWGAAEAGYMKALALLVPAS
KELDIGSELSRGARTAMKTRVQREASAMLDRCEQLRLFLRATAPTVPTHI
PDMPKVERHTLRPKGPWNSSPPRKTRTSLDEDPISPDSAVLPPRARTKKS
VVKPQLYIPPPPPPAFQDNPRELFQRIEDRKNAFSAASIAFPPASHAQNT
ERESIEREVTTPKNSEAHAQCFMCNENAHFSTPCGHEFCSICGNQAVSVF
GKCPVPGCTTVLTTESFAHILPKSKPYPGGRK*

spliced messenger RNA

>Gchil10087.t1 ID=Gchil10087.t1|Name=Gchil10087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004442_pilon:758949..760697+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGCTTCGCAAAATTCCGCCGACGCGGAAGCTCTGACGTGCGGAT
GCCGCCCTTTGAACCTGAATCCCATCCATCAAATCAGCTACCAGCCGAAA
CAGCGGATCTTCCTGCTCTAGACGGAAAACGTTCAGTTGAAGTTTCTGGT
GCAAAGAAGTCCATTCGGTCCCTATTCAAACAACGACCTCGACAGTTTCC
AAAGCAGTCCGCAGATGAAGTTTCTGTCCCGTCTAGTATCAATTCAACAT
CACCACCTTCGGCCACCGCCTCTCAAGCCCCAGGTCCCGACTCCGTTTTA
CCAGTTCTCACCTCTGAAGAAAAGCGCGCCAAAGACGCCCGCCGTAAGGC
GCGTCGTGCTGAGCGCGAACGCAGGGAACTCGAATGGAATGAAGAAAACC
GCGAGCGTAGAAACAAAACCGTCATAACCGGAGTTTCATTCGACCCCTTA
CCACCACTTTCTGATTTTGATTCTGCCTCGGAAGACGAACGCGAAAGTCC
GTCAGGAGAGGACGGACCCAATAATTTTGGTCAACAACAATCTGCCTCAA
GCGCAATTATAACTTCTCAAGAAGCTCCTCATCTCGACATTGCGGCCGCA
ACTATCCCGAGAAGTCAAAATGACGATGCGAGGCTAGCAGAGATGTTCGG
AGCCCAGGCACTTCTGTTGGCTCCTTACTCTCAACGCTCAACAGTTCCTA
CGGCATCTTCCGACAACAATTCGAATAACGACCCCTCAGGAATGAATGCT
ACTCCGACGAAACCAGCCGAGACCGCCTTCCCTAAGGCCAGTGATTTGAT
ACATCCTCCAAAGCAACCGGCTCCTATCGGGTGGGGTGATACGTATGATA
CCGTACCTTCTCAACCATTGTACGGCACACCTTCACACCTTGTCCAACGC
GGCCCCATGGCAATAGAAGCCGCTTTAGCGGGTAAGATTAGCCGTGGCAG
AGAGTTAGCGTTGTTGGCAATCGAGCAGGAAGAGAAAGGGAATTGGGGTG
CGGCCGAAGCTGGTTATATGAAAGCATTGGCTCTTCTTGTGCCGGCTTCA
AAAGAGCTTGATATAGGATCCGAACTGAGTCGGGGCGCGCGTACGGCAAT
GAAGACTAGAGTGCAACGTGAAGCCTCTGCAATGCTCGACAGGTGTGAGC
AATTGCGTCTTTTCCTAAGGGCGACGGCGCCCACCGTCCCAACTCACATT
CCCGACATGCCAAAGGTAGAAAGGCATACTCTAAGGCCAAAAGGACCGTG
GAACTCCAGCCCGCCGCGGAAAACGCGCACGAGTTTGGACGAAGACCCAA
TTTCGCCGGATTCTGCAGTGTTGCCTCCTAGGGCCAGGACGAAGAAATCC
GTTGTCAAGCCTCAGTTGTACATTCCTCCTCCACCGCCTCCAGCTTTCCA
AGACAATCCACGCGAACTGTTCCAGCGAATCGAAGATCGCAAAAACGCGT
TTTCTGCTGCCTCCATTGCGTTTCCACCAGCATCTCATGCGCAGAATACA
GAAAGGGAAAGTATCGAAAGGGAAGTCACTACTCCGAAAAACTCGGAAGC
CCACGCTCAATGCTTCATGTGTAACGAAAACGCCCATTTCAGTACACCTT
GTGGTCATGAGTTCTGTTCGATATGCGGAAATCAAGCAGTATCTGTTTTC
GGGAAATGCCCTGTACCAGGATGTACTACGGTACTCACTACGGAATCATT
CGCTCATATTTTGCCAAAAAGCAAACCATATCCTGGTGGGCGCAAGTAG

protein sequence of Gchil10087.t1

>Gchil10087.t1 ID=Gchil10087.t1|Name=Gchil10087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=583bp
MLRFAKFRRRGSSDVRMPPFEPESHPSNQLPAETADLPALDGKRSVEVSG
AKKSIRSLFKQRPRQFPKQSADEVSVPSSINSTSPPSATASQAPGPDSVL
PVLTSEEKRAKDARRKARRAERERRELEWNEENRERRNKTVITGVSFDPL
PPLSDFDSASEDERESPSGEDGPNNFGQQQSASSAIITSQEAPHLDIAAA
TIPRSQNDDARLAEMFGAQALLLAPYSQRSTVPTASSDNNSNNDPSGMNA
TPTKPAETAFPKASDLIHPPKQPAPIGWGDTYDTVPSQPLYGTPSHLVQR
GPMAIEAALAGKISRGRELALLAIEQEEKGNWGAAEAGYMKALALLVPAS
KELDIGSELSRGARTAMKTRVQREASAMLDRCEQLRLFLRATAPTVPTHI
PDMPKVERHTLRPKGPWNSSPPRKTRTSLDEDPISPDSAVLPPRARTKKS
VVKPQLYIPPPPPPAFQDNPRELFQRIEDRKNAFSAASIAFPPASHAQNT
ERESIEREVTTPKNSEAHAQCFMCNENAHFSTPCGHEFCSICGNQAVSVF
GKCPVPGCTTVLTTESFAHILPKSKPYPGGRK*

mRNA from alignment at tig00004442_pilon:758949..760697+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10087.t1 ID=Gchil10087.t1|Name=Gchil10087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at tig00004442_pilon:758949..760697+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCGCTTCGCAAAATTCCGCCGACGCGGAAGCTCTGACGTGCGGAT
GCCGCCCTTTGAACCTGAATCCCATCCATCAAATCAGCTACCAGCCGAAA
CAGCGGATCTTCCTGCTCTAGACGGAAAACGTTCAGTTGAAGTTTCTGGT
GCAAAGAAGTCCATTCGGTCCCTATTCAAACAACGACCTCGACAGTTTCC
AAAGCAGTCCGCAGATGAAGTTTCTGTCCCGTCTAGTATCAATTCAACAT
CACCACCTTCGGCCACCGCCTCTCAAGCCCCAGGTCCCGACTCCGTTTTA
CCAGTTCTCACCTCTGAAGAAAAGCGCGCCAAAGACGCCCGCCGTAAGGC
GCGTCGTGCTGAGCGCGAACGCAGGGAACTCGAATGGAATGAAGAAAACC
GCGAGCGTAGAAACAAAACCGTCATAACCGGAGTTTCATTCGACCCCTTA
CCACCACTTTCTGATTTTGATTCTGCCTCGGAAGACGAACGCGAAAGTCC
GTCAGGAGAGGACGGACCCAATAATTTTGGTCAACAACAATCTGCCTCAA
GCGCAATTATAACTTCTCAAGAAGCTCCTCATCTCGACATTGCGGCCGCA
ACTATCCCGAGAAGTCAAAATGACGATGCGAGGCTAGCAGAGATGTTCGG
AGCCCAGGCACTTCTGTTGGCTCCTTACTCTCAACGCTCAACAGTTCCTA
CGGCATCTTCCGACAACAATTCGAATAACGACCCCTCAGGAATGAATGCT
ACTCCGACGAAACCAGCCGAGACCGCCTTCCCTAAGGCCAGTGATTTGAT
ACATCCTCCAAAGCAACCGGCTCCTATCGGGTGGGGTGATACGTATGATA
CCGTACCTTCTCAACCATTGTACGGCACACCTTCACACCTTGTCCAACGC
GGCCCCATGGCAATAGAAGCCGCTTTAGCGGGTAAGATTAGCCGTGGCAG
AGAGTTAGCGTTGTTGGCAATCGAGCAGGAAGAGAAAGGGAATTGGGGTG
CGGCCGAAGCTGGTTATATGAAAGCATTGGCTCTTCTTGTGCCGGCTTCA
AAAGAGCTTGATATAGGATCCGAACTGAGTCGGGGCGCGCGTACGGCAAT
GAAGACTAGAGTGCAACGTGAAGCCTCTGCAATGCTCGACAGGTGTGAGC
AATTGCGTCTTTTCCTAAGGGCGACGGCGCCCACCGTCCCAACTCACATT
CCCGACATGCCAAAGGTAGAAAGGCATACTCTAAGGCCAAAAGGACCGTG
GAACTCCAGCCCGCCGCGGAAAACGCGCACGAGTTTGGACGAAGACCCAA
TTTCGCCGGATTCTGCAGTGTTGCCTCCTAGGGCCAGGACGAAGAAATCC
GTTGTCAAGCCTCAGTTGTACATTCCTCCTCCACCGCCTCCAGCTTTCCA
AGACAATCCACGCGAACTGTTCCAGCGAATCGAAGATCGCAAAAACGCGT
TTTCTGCTGCCTCCATTGCGTTTCCACCAGCATCTCATGCGCAGAATACA
GAAAGGGAAAGTATCGAAAGGGAAGTCACTACTCCGAAAAACTCGGAAGC
CCACGCTCAATGCTTCATGTGTAACGAAAACGCCCATTTCAGTACACCTT
GTGGTCATGAGTTCTGTTCGATATGCGGAAATCAAGCAGTATCTGTTTTC
GGGAAATGCCCTGTACCAGGATGTACTACGGTACTCACTACGGAATCATT
CGCTCATATTTTGCCAAAAAGCAAACCATATCCTGGTGGGCGCAAGTAG

Coding sequence (CDS) from alignment at tig00004442_pilon:758949..760697+

>Gchil10087.t1 ID=Gchil10087.t1|Name=Gchil10087.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1749bp|location=Sequence derived from alignment at tig00004442_pilon:758949..760697+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCGCTTCGCAAAATTCCGCCGACGCGGAAGCTCTGACGTGCGGAT
GCCGCCCTTTGAACCTGAATCCCATCCATCAAATCAGCTACCAGCCGAAA
CAGCGGATCTTCCTGCTCTAGACGGAAAACGTTCAGTTGAAGTTTCTGGT
GCAAAGAAGTCCATTCGGTCCCTATTCAAACAACGACCTCGACAGTTTCC
AAAGCAGTCCGCAGATGAAGTTTCTGTCCCGTCTAGTATCAATTCAACAT
CACCACCTTCGGCCACCGCCTCTCAAGCCCCAGGTCCCGACTCCGTTTTA
CCAGTTCTCACCTCTGAAGAAAAGCGCGCCAAAGACGCCCGCCGTAAGGC
GCGTCGTGCTGAGCGCGAACGCAGGGAACTCGAATGGAATGAAGAAAACC
GCGAGCGTAGAAACAAAACCGTCATAACCGGAGTTTCATTCGACCCCTTA
CCACCACTTTCTGATTTTGATTCTGCCTCGGAAGACGAACGCGAAAGTCC
GTCAGGAGAGGACGGACCCAATAATTTTGGTCAACAACAATCTGCCTCAA
GCGCAATTATAACTTCTCAAGAAGCTCCTCATCTCGACATTGCGGCCGCA
ACTATCCCGAGAAGTCAAAATGACGATGCGAGGCTAGCAGAGATGTTCGG
AGCCCAGGCACTTCTGTTGGCTCCTTACTCTCAACGCTCAACAGTTCCTA
CGGCATCTTCCGACAACAATTCGAATAACGACCCCTCAGGAATGAATGCT
ACTCCGACGAAACCAGCCGAGACCGCCTTCCCTAAGGCCAGTGATTTGAT
ACATCCTCCAAAGCAACCGGCTCCTATCGGGTGGGGTGATACGTATGATA
CCGTACCTTCTCAACCATTGTACGGCACACCTTCACACCTTGTCCAACGC
GGCCCCATGGCAATAGAAGCCGCTTTAGCGGGTAAGATTAGCCGTGGCAG
AGAGTTAGCGTTGTTGGCAATCGAGCAGGAAGAGAAAGGGAATTGGGGTG
CGGCCGAAGCTGGTTATATGAAAGCATTGGCTCTTCTTGTGCCGGCTTCA
AAAGAGCTTGATATAGGATCCGAACTGAGTCGGGGCGCGCGTACGGCAAT
GAAGACTAGAGTGCAACGTGAAGCCTCTGCAATGCTCGACAGGTGTGAGC
AATTGCGTCTTTTCCTAAGGGCGACGGCGCCCACCGTCCCAACTCACATT
CCCGACATGCCAAAGGTAGAAAGGCATACTCTAAGGCCAAAAGGACCGTG
GAACTCCAGCCCGCCGCGGAAAACGCGCACGAGTTTGGACGAAGACCCAA
TTTCGCCGGATTCTGCAGTGTTGCCTCCTAGGGCCAGGACGAAGAAATCC
GTTGTCAAGCCTCAGTTGTACATTCCTCCTCCACCGCCTCCAGCTTTCCA
AGACAATCCACGCGAACTGTTCCAGCGAATCGAAGATCGCAAAAACGCGT
TTTCTGCTGCCTCCATTGCGTTTCCACCAGCATCTCATGCGCAGAATACA
GAAAGGGAAAGTATCGAAAGGGAAGTCACTACTCCGAAAAACTCGGAAGC
CCACGCTCAATGCTTCATGTGTAACGAAAACGCCCATTTCAGTACACCTT
GTGGTCATGAGTTCTGTTCGATATGCGGAAATCAAGCAGTATCTGTTTTC
GGGAAATGCCCTGTACCAGGATGTACTACGGTACTCACTACGGAATCATT
CGCTCATATTTTGCCAAAAAGCAAACCATATCCTGGTGGGCGCAAGTAG