Gchil10086.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10086.t1
Unique NameGchil10086.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:757005..757705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707875.1
PFAMsPeptidase_M76
Max annot lvl2759|Eukaryota
KEGG koko:K12492,ko:K18156
KEGG Pathwayko04144,map04144
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue5.36e-64
EggNOG OGsKOG3314@1|root,KOG3314@2759|Eukaryota
Descriptionmetalloendopeptidase activity
COG categoryE
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10086Gchil10086Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 757005..757705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10086.t1Gchil10086.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 757005..757705 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10086.t1.stop1Gchil10086.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 757005..757007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10086.t1.CDS1Gchil10086.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 757005..757076 -
Gchil10086.t1.CDS2Gchil10086.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 757167..757575 -
Gchil10086.t1.CDS3Gchil10086.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 757641..757705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10086.t1.exon1Gchil10086.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 757005..757076 -
Gchil10086.t1.exon2Gchil10086.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 757167..757575 -
Gchil10086.t1.exon3Gchil10086.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 757641..757705 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10086.t1.intron1Gchil10086.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 757077..757166 -
Gchil10086.t1.intron2Gchil10086.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 757576..757640 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10086.t1.start1Gchil10086.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 757703..757705 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10086.t1 ID=Gchil10086.t1|Name=Gchil10086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MALSEEAEMNRCQNFRDEAFKSHPSVRFMFKHLKRGGCELSPERVICKRC
DGQLAGGFQDDGGILLCSNHLTTQEHTSNTLVHEAVHAFDQCRAKIDWAN
CVHHACSEIRAAALSGDCSFGREVFLRRNFGFAKQFQRCVKRRAELSVSL
NPFCQGVATKLAVQQAWDACFNDTAPFEKLP*
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spliced messenger RNA

>Gchil10086.t1 ID=Gchil10086.t1|Name=Gchil10086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004442_pilon:757005..757705- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTTCAGAAGAAGCGGAGATGAACCGATGCCAAAACTTTAGAGA
CGAAGCGTTCAAAAGTCATCCTTCAGTTCGCTTCATGTTCAAGCACTTGA
AACGTGGAGGTTGTGAGTTAAGTCCAGAAAGAGTAATATGCAAGAGATGT
GACGGGCAGCTGGCAGGTGGTTTTCAAGACGACGGAGGAATTCTTCTCTG
TTCAAACCATCTCACGACGCAGGAGCATACTTCAAACACTCTAGTCCATG
AAGCAGTACATGCATTTGACCAATGCAGAGCGAAAATAGACTGGGCCAAC
TGCGTTCATCACGCGTGTAGCGAGATTCGCGCTGCCGCTCTATCAGGTGA
TTGCAGTTTTGGTCGTGAAGTGTTTCTCCGAAGAAACTTTGGCTTCGCAA
AACAGTTCCAACGGTGCGTAAAGCGGCGTGCTGAACTCTCCGTCTCGTTG
AATCCTTTTTGTCAAGGGGTGGCGACAAAATTAGCGGTGCAGCAAGCATG
GGATGCATGCTTTAATGATACAGCACCTTTCGAAAAGTTACCTTGA
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protein sequence of Gchil10086.t1

>Gchil10086.t1 ID=Gchil10086.t1|Name=Gchil10086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MALSEEAEMNRCQNFRDEAFKSHPSVRFMFKHLKRGGCELSPERVICKRC
DGQLAGGFQDDGGILLCSNHLTTQEHTSNTLVHEAVHAFDQCRAKIDWAN
CVHHACSEIRAAALSGDCSFGREVFLRRNFGFAKQFQRCVKRRAELSVSL
NPFCQGVATKLAVQQAWDACFNDTAPFEKLP*
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mRNA from alignment at tig00004442_pilon:757005..757705-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10086.t1 ID=Gchil10086.t1|Name=Gchil10086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=701bp|location=Sequence derived from alignment at tig00004442_pilon:757005..757705- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTTCAGAAGAAGCGGAGATGAACCGATGCCAAAACTTTAGAGA
CGAAGCGTTCAAAAGGTATTTGCTGATGATTCTAAATCTTAATCGACCTC
TCCACCAGTATGCTAACCACGACGTTACAGTCATCCTTCAGTTCGCTTCA
TGTTCAAGCACTTGAAACGTGGAGGTTGTGAGTTAAGTCCAGAAAGAGTA
ATATGCAAGAGATGTGACGGGCAGCTGGCAGGTGGTTTTCAAGACGACGG
AGGAATTCTTCTCTGTTCAAACCATCTCACGACGCAGGAGCATACTTCAA
ACACTCTAGTCCATGAAGCAGTACATGCATTTGACCAATGCAGAGCGAAA
ATAGACTGGGCCAACTGCGTTCATCACGCGTGTAGCGAGATTCGCGCTGC
CGCTCTATCAGGTGATTGCAGTTTTGGTCGTGAAGTGTTTCTCCGAAGAA
ACTTTGGCTTCGCAAAACAGTTCCAACGGTGCGTAAAGCGGCGTGCTGAA
CTCTCCGTCTCGTTGAATCCTTTTTGTCAAGGGGTGGCGGTAAGTTTTTG
ATTTATCAATGCGCGCTCGCGAGTTGGTGTGTTCGATCACATTGATAAGA
TAGTACTAACAATCAAATACTGCTCGTAGACAAAATTAGCGGTGCAGCAA
GCATGGGATGCATGCTTTAATGATACAGCACCTTTCGAAAAGTTACCTTG
A
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Coding sequence (CDS) from alignment at tig00004442_pilon:757005..757705-

>Gchil10086.t1 ID=Gchil10086.t1|Name=Gchil10086.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00004442_pilon:757005..757705- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTTTCAGAAGAAGCGGAGATGAACCGATGCCAAAACTTTAGAGA
CGAAGCGTTCAAAAGTCATCCTTCAGTTCGCTTCATGTTCAAGCACTTGA
AACGTGGAGGTTGTGAGTTAAGTCCAGAAAGAGTAATATGCAAGAGATGT
GACGGGCAGCTGGCAGGTGGTTTTCAAGACGACGGAGGAATTCTTCTCTG
TTCAAACCATCTCACGACGCAGGAGCATACTTCAAACACTCTAGTCCATG
AAGCAGTACATGCATTTGACCAATGCAGAGCGAAAATAGACTGGGCCAAC
TGCGTTCATCACGCGTGTAGCGAGATTCGCGCTGCCGCTCTATCAGGTGA
TTGCAGTTTTGGTCGTGAAGTGTTTCTCCGAAGAAACTTTGGCTTCGCAA
AACAGTTCCAACGGTGCGTAAAGCGGCGTGCTGAACTCTCCGTCTCGTTG
AATCCTTTTTGTCAAGGGGTGGCGACAAAATTAGCGGTGCAGCAAGCATG
GGATGCATGCTTTAATGATACAGCACCTTTCGAAAAGTTACCTTGA
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