Gchil10085.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10085.t1
Unique Name	Gchil10085.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:755595..756950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5011.R4X8L7
PFAMs	DUF1764
Max annot lvl	4751\|Fungi
Evalue	0.000846
EggNOG OGs	2E28N@1\|root,2SCT1@2759\|Eukaryota,3AC0C@33154\|Opisthokonta,3P921@4751\|Fungi,3R002@4890\|Ascomycota,3MD9Z@451866\|Taphrinomycotina
Description	Eukaryotic protein of unknown function (DUF1764)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10085	Gchil10085	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 755595..756950 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10085.t1.start1	Gchil10085.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 755595..755597 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10085.t1.CDS1	Gchil10085.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 755595..756950 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10085.t1.exon1	Gchil10085.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 755595..756950 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10085.t1.stop1	Gchil10085.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 756948..756950 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10085.t1	Gchil10085.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 755595..756950 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:755595..756950+
coding sequence from alignment at tig00004442_pilon:755595..756950+

mRNA sequence

>Gchil10085.t1 ID=Gchil10085.t1|Name=Gchil10085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=452bp
MVTVDMSKTRQQISKRKRRLRRLQRRRVQKARRQHHAQLLAATAAKKARE
ESVQKWFEEENRRENRRENRRDHQRVSSPSSPATPQHKPRVRFADNVFVT
EIPALPQHSLPKPVSSPTGVKLVRDHAHPLPGSHLVHSASTLRFALFSDD
DSDYDEDCDPDFVPPDHDSDIDILPSPTRPKRRVIPQPVPVLNSTTQKVP
EAHTKHLPNASPAPTTPTSPTPQQQTPKPATRVTSNAANPESTTAEKSSK
RKRTHSQMLSDSHASSSSAPSDSVAAESNGTHANDTESPKRRKKKKRKLS
STVQCEANVHHDSKSLASGERTSSRKNAQPMETESDRDMKSPQSRPDSAN
GESTKHRSTLSNTEDEDIDAMFGEMVRHKAQKKAEQRNRKKADKANGEKP
VNEPDKGKSPKKKGPTRYTEEGFRILSYDDIKSDQPSGLNGECPFECSCC
F*

spliced messenger RNA

>Gchil10085.t1 ID=Gchil10085.t1|Name=Gchil10085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004442_pilon:755595..756950+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACCGTGGACATGTCCAAGACGCGTCAACAGATTTCGAAGCGTAA
ACGCCGTCTGCGACGCCTGCAGCGTCGCCGCGTTCAGAAGGCGCGTCGTC
AGCACCACGCGCAGCTACTGGCCGCCACCGCTGCCAAGAAGGCGCGTGAA
GAGTCTGTGCAAAAATGGTTTGAGGAAGAGAATCGTCGCGAGAATCGTCG
CGAGAATCGTCGCGACCACCAGCGCGTCTCCTCGCCTTCCTCCCCCGCCA
CGCCGCAGCACAAGCCGCGCGTCCGCTTTGCTGACAATGTCTTTGTCACC
GAAATTCCTGCTTTGCCGCAGCATAGCCTGCCGAAGCCCGTTTCATCACC
CACAGGAGTCAAACTAGTTCGAGATCATGCCCACCCGCTTCCTGGTTCTC
ACCTCGTGCACAGCGCCAGTACCCTTCGCTTTGCGCTCTTCTCCGACGAC
GACAGTGATTATGACGAGGACTGCGATCCGGACTTCGTTCCCCCCGATCA
CGACTCCGATATCGACATTCTTCCCTCACCCACCAGGCCGAAGCGCCGCG
TTATTCCTCAGCCAGTTCCCGTTTTAAACTCAACAACCCAAAAAGTCCCC
GAGGCCCACACAAAACATTTACCAAACGCTTCACCAGCCCCAACTACCCC
AACATCCCCGACACCTCAACAACAAACCCCCAAGCCAGCTACACGGGTCA
CCAGCAATGCTGCCAACCCCGAATCCACTACAGCTGAAAAGTCTTCAAAG
CGAAAGCGAACCCATTCTCAGATGCTGTCCGACAGCCATGCATCTTCGTC
TAGTGCCCCCTCTGACTCGGTGGCCGCAGAAAGTAACGGCACACATGCTA
ATGATACTGAGTCTCCGAAGCGCCGTAAGAAAAAGAAACGCAAGCTTTCA
AGTACAGTTCAATGCGAAGCAAACGTTCACCACGATTCAAAGTCACTCGC
GTCTGGTGAACGCACCTCTTCGAGAAAAAATGCCCAACCCATGGAGACCG
AATCCGACCGCGATATGAAATCGCCGCAGTCGAGACCTGACTCTGCCAAT
GGGGAAAGCACCAAACATAGGAGCACCCTGAGTAACACAGAAGACGAAGA
CATTGACGCCATGTTTGGTGAAATGGTTCGCCATAAGGCACAGAAGAAGG
CTGAGCAGCGCAATCGAAAGAAAGCGGATAAAGCTAATGGCGAGAAGCCA
GTCAACGAACCCGATAAGGGAAAATCGCCTAAGAAGAAAGGACCCACAAG
GTACACTGAGGAGGGTTTTCGCATTCTGAGCTATGATGACATCAAATCTG
ATCAACCCTCAGGCTTAAACGGGGAATGTCCATTTGAATGCTCTTGTTGT
TTTTGA

protein sequence of Gchil10085.t1

>Gchil10085.t1 ID=Gchil10085.t1|Name=Gchil10085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=452bp
MVTVDMSKTRQQISKRKRRLRRLQRRRVQKARRQHHAQLLAATAAKKARE
ESVQKWFEEENRRENRRENRRDHQRVSSPSSPATPQHKPRVRFADNVFVT
EIPALPQHSLPKPVSSPTGVKLVRDHAHPLPGSHLVHSASTLRFALFSDD
DSDYDEDCDPDFVPPDHDSDIDILPSPTRPKRRVIPQPVPVLNSTTQKVP
EAHTKHLPNASPAPTTPTSPTPQQQTPKPATRVTSNAANPESTTAEKSSK
RKRTHSQMLSDSHASSSSAPSDSVAAESNGTHANDTESPKRRKKKKRKLS
STVQCEANVHHDSKSLASGERTSSRKNAQPMETESDRDMKSPQSRPDSAN
GESTKHRSTLSNTEDEDIDAMFGEMVRHKAQKKAEQRNRKKADKANGEKP
VNEPDKGKSPKKKGPTRYTEEGFRILSYDDIKSDQPSGLNGECPFECSCC
F*

mRNA from alignment at tig00004442_pilon:755595..756950+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10085.t1 ID=Gchil10085.t1|Name=Gchil10085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004442_pilon:755595..756950+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCACCGTGGACATGTCCAAGACGCGTCAACAGATTTCGAAGCGTAA
ACGCCGTCTGCGACGCCTGCAGCGTCGCCGCGTTCAGAAGGCGCGTCGTC
AGCACCACGCGCAGCTACTGGCCGCCACCGCTGCCAAGAAGGCGCGTGAA
GAGTCTGTGCAAAAATGGTTTGAGGAAGAGAATCGTCGCGAGAATCGTCG
CGAGAATCGTCGCGACCACCAGCGCGTCTCCTCGCCTTCCTCCCCCGCCA
CGCCGCAGCACAAGCCGCGCGTCCGCTTTGCTGACAATGTCTTTGTCACC
GAAATTCCTGCTTTGCCGCAGCATAGCCTGCCGAAGCCCGTTTCATCACC
CACAGGAGTCAAACTAGTTCGAGATCATGCCCACCCGCTTCCTGGTTCTC
ACCTCGTGCACAGCGCCAGTACCCTTCGCTTTGCGCTCTTCTCCGACGAC
GACAGTGATTATGACGAGGACTGCGATCCGGACTTCGTTCCCCCCGATCA
CGACTCCGATATCGACATTCTTCCCTCACCCACCAGGCCGAAGCGCCGCG
TTATTCCTCAGCCAGTTCCCGTTTTAAACTCAACAACCCAAAAAGTCCCC
GAGGCCCACACAAAACATTTACCAAACGCTTCACCAGCCCCAACTACCCC
AACATCCCCGACACCTCAACAACAAACCCCCAAGCCAGCTACACGGGTCA
CCAGCAATGCTGCCAACCCCGAATCCACTACAGCTGAAAAGTCTTCAAAG
CGAAAGCGAACCCATTCTCAGATGCTGTCCGACAGCCATGCATCTTCGTC
TAGTGCCCCCTCTGACTCGGTGGCCGCAGAAAGTAACGGCACACATGCTA
ATGATACTGAGTCTCCGAAGCGCCGTAAGAAAAAGAAACGCAAGCTTTCA
AGTACAGTTCAATGCGAAGCAAACGTTCACCACGATTCAAAGTCACTCGC
GTCTGGTGAACGCACCTCTTCGAGAAAAAATGCCCAACCCATGGAGACCG
AATCCGACCGCGATATGAAATCGCCGCAGTCGAGACCTGACTCTGCCAAT
GGGGAAAGCACCAAACATAGGAGCACCCTGAGTAACACAGAAGACGAAGA
CATTGACGCCATGTTTGGTGAAATGGTTCGCCATAAGGCACAGAAGAAGG
CTGAGCAGCGCAATCGAAAGAAAGCGGATAAAGCTAATGGCGAGAAGCCA
GTCAACGAACCCGATAAGGGAAAATCGCCTAAGAAGAAAGGACCCACAAG
GTACACTGAGGAGGGTTTTCGCATTCTGAGCTATGATGACATCAAATCTG
ATCAACCCTCAGGCTTAAACGGGGAATGTCCATTTGAATGCTCTTGTTGT
TTTTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:755595..756950+

>Gchil10085.t1 ID=Gchil10085.t1|Name=Gchil10085.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00004442_pilon:755595..756950+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCACCGTGGACATGTCCAAGACGCGTCAACAGATTTCGAAGCGTAA
ACGCCGTCTGCGACGCCTGCAGCGTCGCCGCGTTCAGAAGGCGCGTCGTC
AGCACCACGCGCAGCTACTGGCCGCCACCGCTGCCAAGAAGGCGCGTGAA
GAGTCTGTGCAAAAATGGTTTGAGGAAGAGAATCGTCGCGAGAATCGTCG
CGAGAATCGTCGCGACCACCAGCGCGTCTCCTCGCCTTCCTCCCCCGCCA
CGCCGCAGCACAAGCCGCGCGTCCGCTTTGCTGACAATGTCTTTGTCACC
GAAATTCCTGCTTTGCCGCAGCATAGCCTGCCGAAGCCCGTTTCATCACC
CACAGGAGTCAAACTAGTTCGAGATCATGCCCACCCGCTTCCTGGTTCTC
ACCTCGTGCACAGCGCCAGTACCCTTCGCTTTGCGCTCTTCTCCGACGAC
GACAGTGATTATGACGAGGACTGCGATCCGGACTTCGTTCCCCCCGATCA
CGACTCCGATATCGACATTCTTCCCTCACCCACCAGGCCGAAGCGCCGCG
TTATTCCTCAGCCAGTTCCCGTTTTAAACTCAACAACCCAAAAAGTCCCC
GAGGCCCACACAAAACATTTACCAAACGCTTCACCAGCCCCAACTACCCC
AACATCCCCGACACCTCAACAACAAACCCCCAAGCCAGCTACACGGGTCA
CCAGCAATGCTGCCAACCCCGAATCCACTACAGCTGAAAAGTCTTCAAAG
CGAAAGCGAACCCATTCTCAGATGCTGTCCGACAGCCATGCATCTTCGTC
TAGTGCCCCCTCTGACTCGGTGGCCGCAGAAAGTAACGGCACACATGCTA
ATGATACTGAGTCTCCGAAGCGCCGTAAGAAAAAGAAACGCAAGCTTTCA
AGTACAGTTCAATGCGAAGCAAACGTTCACCACGATTCAAAGTCACTCGC
GTCTGGTGAACGCACCTCTTCGAGAAAAAATGCCCAACCCATGGAGACCG
AATCCGACCGCGATATGAAATCGCCGCAGTCGAGACCTGACTCTGCCAAT
GGGGAAAGCACCAAACATAGGAGCACCCTGAGTAACACAGAAGACGAAGA
CATTGACGCCATGTTTGGTGAAATGGTTCGCCATAAGGCACAGAAGAAGG
CTGAGCAGCGCAATCGAAAGAAAGCGGATAAAGCTAATGGCGAGAAGCCA
GTCAACGAACCCGATAAGGGAAAATCGCCTAAGAAGAAAGGACCCACAAG
GTACACTGAGGAGGGTTTTCGCATTCTGAGCTATGATGACATCAAATCTG
ATCAACCCTCAGGCTTAAACGGGGAATGTCCATTTGAATGCTCTTGTTGT
TTTTGA