Gchil10084.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10084.t1
Unique NameGchil10084.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:753708..754877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK011CT
PFAMsDHQ_synthase
Max annot lvl2759|Eukaryota
KEGG rclassRC00847
KEGG koko:K01735
KEGG ReactionR03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0003674,GO:0003824,GO:0003856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019632,GO:0019752,GO:0031410,GO:0031982,GO:0031984,GO:0032787,GO:0033587,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:0097708,GO:0098791,GO:1901576,GO:1901615,GO:1901617
Evalue1.35e-165
EggNOG OGsCOG0169@1|root,KOG0692@2759|Eukaryota
EC4.2.3.4
Descriptionshikimate 3-dehydrogenase (NADP ) activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10084Gchil10084Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 753708..754877 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10084.t1.stop1Gchil10084.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 753708..753710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10084.t1.CDS1Gchil10084.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 753708..754877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10084.t1.exon1Gchil10084.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 753708..754877 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10084.t1.start1Gchil10084.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 754875..754877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10084.t1Gchil10084.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 753708..754877 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10084.t1 ID=Gchil10084.t1|Name=Gchil10084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=390bp
MTAPKDTTQRDFTLYVDAPSKRYPILFAEDVLSDPQTFKPYIPGDKVLIV
TNTTVAPLYLDRVRSAVQAIGLSVFQVILPDGEMYKSLESVSTIWDFCMK
QRLDRKSTMIALGGGVIGDTTGFAAASFVRGIPFIQVPTTLLAVVDSSVG
GKTGINHHMGKNMIGAFYQPQAVIVDSKVLQTLNDRQLAAGVAEIIKYGI
IRDWRFFEWCEQNVERLVNREPEALQYAMVQSCKYKADIVGEDERESGIR
AILNLGHTFGHAIEASMGYGTWLHGEAVAAGMVMACEMSMRLGWISREVT
RRVESVLSRASLPIRPPPTVTLERFMTFMAVDKKVEAGVLRLILLKEPGK
AIVTADFPESVLFDTIMYYQQLFKENPGTYEHAMRSLPQ*
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spliced messenger RNA

>Gchil10084.t1 ID=Gchil10084.t1|Name=Gchil10084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00004442_pilon:753708..754877- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGCCAAAGGACACAACTCAGCGCGATTTCACGCTCTACGTCGA
TGCGCCGTCGAAGCGATACCCTATCCTCTTTGCCGAGGACGTTCTTTCCG
ATCCGCAAACTTTCAAGCCCTACATACCAGGTGATAAAGTTCTCATCGTC
ACCAACACCACGGTGGCGCCGCTCTATCTTGATCGCGTTAGGAGCGCCGT
ACAAGCCATCGGCCTTTCCGTGTTTCAAGTTATCCTTCCGGACGGTGAAA
TGTACAAGAGTCTCGAAAGTGTCTCTACTATATGGGATTTCTGTATGAAG
CAGAGACTTGATCGAAAGAGTACTATGATCGCGCTTGGCGGCGGTGTTAT
TGGAGATACCACCGGCTTTGCTGCCGCCTCGTTTGTGCGGGGAATTCCAT
TCATTCAGGTGCCCACGACTTTGCTTGCTGTCGTCGACTCTTCGGTCGGT
GGAAAGACAGGTATAAACCACCATATGGGCAAGAATATGATAGGCGCATT
CTATCAGCCTCAGGCTGTTATCGTTGATTCCAAAGTGTTGCAAACCCTTA
ACGACCGTCAACTTGCGGCAGGTGTTGCTGAAATTATAAAGTATGGCATC
ATTCGTGATTGGCGCTTCTTTGAATGGTGTGAGCAGAACGTCGAACGCCT
GGTAAATAGAGAGCCCGAAGCCTTGCAGTACGCCATGGTCCAGAGCTGCA
AGTATAAAGCCGATATTGTTGGTGAGGATGAGAGAGAAAGTGGCATCCGA
GCCATTCTGAATTTGGGTCATACGTTTGGTCACGCCATCGAAGCGAGTAT
GGGATACGGTACATGGCTTCATGGAGAAGCTGTTGCAGCAGGGATGGTCA
TGGCATGTGAGATGAGCATGAGATTAGGTTGGATATCAAGAGAAGTTACC
CGGAGAGTCGAATCTGTTCTTTCTCGTGCCAGTCTTCCAATCCGCCCGCC
TCCAACTGTCACTTTGGAGAGATTTATGACGTTCATGGCTGTTGACAAAA
AAGTTGAGGCGGGCGTGCTAAGATTGATTTTGCTCAAAGAACCTGGCAAA
GCAATTGTCACCGCTGACTTCCCGGAGAGCGTACTTTTTGACACGATTAT
GTATTACCAACAACTGTTCAAAGAAAATCCGGGAACATATGAACATGCGA
TGCGGAGCTTACCCCAGTGA
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protein sequence of Gchil10084.t1

>Gchil10084.t1 ID=Gchil10084.t1|Name=Gchil10084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=390bp
MTAPKDTTQRDFTLYVDAPSKRYPILFAEDVLSDPQTFKPYIPGDKVLIV
TNTTVAPLYLDRVRSAVQAIGLSVFQVILPDGEMYKSLESVSTIWDFCMK
QRLDRKSTMIALGGGVIGDTTGFAAASFVRGIPFIQVPTTLLAVVDSSVG
GKTGINHHMGKNMIGAFYQPQAVIVDSKVLQTLNDRQLAAGVAEIIKYGI
IRDWRFFEWCEQNVERLVNREPEALQYAMVQSCKYKADIVGEDERESGIR
AILNLGHTFGHAIEASMGYGTWLHGEAVAAGMVMACEMSMRLGWISREVT
RRVESVLSRASLPIRPPPTVTLERFMTFMAVDKKVEAGVLRLILLKEPGK
AIVTADFPESVLFDTIMYYQQLFKENPGTYEHAMRSLPQ*
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mRNA from alignment at tig00004442_pilon:753708..754877-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10084.t1 ID=Gchil10084.t1|Name=Gchil10084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00004442_pilon:753708..754877- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGCCAAAGGACACAACTCAGCGCGATTTCACGCTCTACGTCGA
TGCGCCGTCGAAGCGATACCCTATCCTCTTTGCCGAGGACGTTCTTTCCG
ATCCGCAAACTTTCAAGCCCTACATACCAGGTGATAAAGTTCTCATCGTC
ACCAACACCACGGTGGCGCCGCTCTATCTTGATCGCGTTAGGAGCGCCGT
ACAAGCCATCGGCCTTTCCGTGTTTCAAGTTATCCTTCCGGACGGTGAAA
TGTACAAGAGTCTCGAAAGTGTCTCTACTATATGGGATTTCTGTATGAAG
CAGAGACTTGATCGAAAGAGTACTATGATCGCGCTTGGCGGCGGTGTTAT
TGGAGATACCACCGGCTTTGCTGCCGCCTCGTTTGTGCGGGGAATTCCAT
TCATTCAGGTGCCCACGACTTTGCTTGCTGTCGTCGACTCTTCGGTCGGT
GGAAAGACAGGTATAAACCACCATATGGGCAAGAATATGATAGGCGCATT
CTATCAGCCTCAGGCTGTTATCGTTGATTCCAAAGTGTTGCAAACCCTTA
ACGACCGTCAACTTGCGGCAGGTGTTGCTGAAATTATAAAGTATGGCATC
ATTCGTGATTGGCGCTTCTTTGAATGGTGTGAGCAGAACGTCGAACGCCT
GGTAAATAGAGAGCCCGAAGCCTTGCAGTACGCCATGGTCCAGAGCTGCA
AGTATAAAGCCGATATTGTTGGTGAGGATGAGAGAGAAAGTGGCATCCGA
GCCATTCTGAATTTGGGTCATACGTTTGGTCACGCCATCGAAGCGAGTAT
GGGATACGGTACATGGCTTCATGGAGAAGCTGTTGCAGCAGGGATGGTCA
TGGCATGTGAGATGAGCATGAGATTAGGTTGGATATCAAGAGAAGTTACC
CGGAGAGTCGAATCTGTTCTTTCTCGTGCCAGTCTTCCAATCCGCCCGCC
TCCAACTGTCACTTTGGAGAGATTTATGACGTTCATGGCTGTTGACAAAA
AAGTTGAGGCGGGCGTGCTAAGATTGATTTTGCTCAAAGAACCTGGCAAA
GCAATTGTCACCGCTGACTTCCCGGAGAGCGTACTTTTTGACACGATTAT
GTATTACCAACAACTGTTCAAAGAAAATCCGGGAACATATGAACATGCGA
TGCGGAGCTTACCCCAGTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:753708..754877-

>Gchil10084.t1 ID=Gchil10084.t1|Name=Gchil10084.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1170bp|location=Sequence derived from alignment at tig00004442_pilon:753708..754877- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGCCAAAGGACACAACTCAGCGCGATTTCACGCTCTACGTCGA
TGCGCCGTCGAAGCGATACCCTATCCTCTTTGCCGAGGACGTTCTTTCCG
ATCCGCAAACTTTCAAGCCCTACATACCAGGTGATAAAGTTCTCATCGTC
ACCAACACCACGGTGGCGCCGCTCTATCTTGATCGCGTTAGGAGCGCCGT
ACAAGCCATCGGCCTTTCCGTGTTTCAAGTTATCCTTCCGGACGGTGAAA
TGTACAAGAGTCTCGAAAGTGTCTCTACTATATGGGATTTCTGTATGAAG
CAGAGACTTGATCGAAAGAGTACTATGATCGCGCTTGGCGGCGGTGTTAT
TGGAGATACCACCGGCTTTGCTGCCGCCTCGTTTGTGCGGGGAATTCCAT
TCATTCAGGTGCCCACGACTTTGCTTGCTGTCGTCGACTCTTCGGTCGGT
GGAAAGACAGGTATAAACCACCATATGGGCAAGAATATGATAGGCGCATT
CTATCAGCCTCAGGCTGTTATCGTTGATTCCAAAGTGTTGCAAACCCTTA
ACGACCGTCAACTTGCGGCAGGTGTTGCTGAAATTATAAAGTATGGCATC
ATTCGTGATTGGCGCTTCTTTGAATGGTGTGAGCAGAACGTCGAACGCCT
GGTAAATAGAGAGCCCGAAGCCTTGCAGTACGCCATGGTCCAGAGCTGCA
AGTATAAAGCCGATATTGTTGGTGAGGATGAGAGAGAAAGTGGCATCCGA
GCCATTCTGAATTTGGGTCATACGTTTGGTCACGCCATCGAAGCGAGTAT
GGGATACGGTACATGGCTTCATGGAGAAGCTGTTGCAGCAGGGATGGTCA
TGGCATGTGAGATGAGCATGAGATTAGGTTGGATATCAAGAGAAGTTACC
CGGAGAGTCGAATCTGTTCTTTCTCGTGCCAGTCTTCCAATCCGCCCGCC
TCCAACTGTCACTTTGGAGAGATTTATGACGTTCATGGCTGTTGACAAAA
AAGTTGAGGCGGGCGTGCTAAGATTGATTTTGCTCAAAGAACCTGGCAAA
GCAATTGTCACCGCTGACTTCCCGGAGAGCGTACTTTTTGACACGATTAT
GTATTACCAACAACTGTTCAAAGAAAATCCGGGAACATATGAACATGCGA
TGCGGAGCTTACCCCAGTGA
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