Gchil10083.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10083.t1
Unique NameGchil10083.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:752241..753164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S355_18V6.1
PFAMstRNA_m1G_MT
Max annot lvl35493|Streptophyta
KEGG koko:K15445
Evalue5.25e-30
EggNOG OGsKOG2967@1|root,KOG2967@2759|Eukaryota,37HNI@33090|Viridiplantae,3GA6Q@35493|Streptophyta
EC2.1.1.221
DescriptiontRNA (Guanine(9)-N1)-methyltransferase
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10083Gchil10083Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 752241..753164 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10083.t1.stop1Gchil10083.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 752241..752243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10083.t1.CDS1Gchil10083.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 752241..753164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10083.t1.exon1Gchil10083.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 752241..753164 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10083.t1.start1Gchil10083.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 753162..753164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10083.t1Gchil10083.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 752241..753164 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10083.t1 ID=Gchil10083.t1|Name=Gchil10083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp
MGATLSQLFRPTQQETELLMISNRETPPQPRPHEELSKNARKKIARERRL
QERKQARKAERRELKVREKIRKRQEREDTLKHLTADQKEQLFREKVEHMR
AGRVAERAKKAQLREVLLNKSKYNVCIDLGWNEQMFEKERKSLARQLAYS
YSILRKYAEEGLTPLRLSIVGMDEHIKPVLSIAAQGWESWPLILSEKGLT
ETHDRRRLVYLTHDAEEVLETLDPSDIYVIGGLVDRNRLKGVTRGKAESL
SIRSAKLNLDANISIQHGTPVLTVNHCVEILLHVANGSSWKQAYLKVLPV
RKGIKSY*
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spliced messenger RNA

>Gchil10083.t1 ID=Gchil10083.t1|Name=Gchil10083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00004442_pilon:752241..753164- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCAACTCTCAGTCAGTTGTTTCGTCCCACTCAGCAAGAAACTGA
ATTACTGATGATTTCTAACCGAGAAACTCCTCCACAACCCCGACCACATG
AAGAACTGTCAAAGAACGCAAGAAAGAAGATAGCGCGCGAACGGCGTCTT
CAGGAACGAAAACAAGCGCGAAAGGCTGAAAGGCGAGAATTGAAGGTTCG
AGAAAAAATAAGAAAGCGACAGGAGAGAGAAGACACACTCAAACATCTTA
CGGCTGATCAGAAAGAACAACTATTTCGTGAGAAGGTTGAACACATGAGA
GCCGGACGTGTTGCTGAAAGAGCGAAGAAAGCCCAACTTCGGGAAGTTCT
GCTGAATAAATCCAAGTACAACGTCTGCATAGATCTTGGCTGGAATGAGC
AAATGTTCGAGAAAGAGAGAAAAAGTTTAGCCCGGCAGTTGGCGTACTCT
TATAGCATATTGCGAAAATATGCAGAGGAAGGATTAACACCTTTGCGCCT
TTCAATTGTTGGGATGGACGAGCACATCAAGCCCGTTCTATCCATCGCTG
CGCAAGGCTGGGAGTCATGGCCTCTTATTCTATCTGAAAAAGGTTTAACA
GAAACACACGATAGAAGAAGGCTCGTATACCTCACTCACGACGCTGAAGA
GGTTTTGGAGACTCTAGATCCTTCTGATATATACGTTATTGGTGGACTTG
TGGATAGAAATCGACTAAAGGGTGTTACACGGGGAAAAGCGGAGAGTTTA
TCCATCCGATCAGCTAAATTGAATTTAGACGCGAACATTTCTATACAACA
CGGAACGCCTGTTCTAACTGTGAATCACTGTGTTGAGATCTTGCTTCATG
TCGCCAACGGAAGCTCGTGGAAACAAGCTTACTTGAAGGTACTACCTGTT
CGCAAGGGAATTAAGAGCTATTGA
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protein sequence of Gchil10083.t1

>Gchil10083.t1 ID=Gchil10083.t1|Name=Gchil10083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=308bp
MGATLSQLFRPTQQETELLMISNRETPPQPRPHEELSKNARKKIARERRL
QERKQARKAERRELKVREKIRKRQEREDTLKHLTADQKEQLFREKVEHMR
AGRVAERAKKAQLREVLLNKSKYNVCIDLGWNEQMFEKERKSLARQLAYS
YSILRKYAEEGLTPLRLSIVGMDEHIKPVLSIAAQGWESWPLILSEKGLT
ETHDRRRLVYLTHDAEEVLETLDPSDIYVIGGLVDRNRLKGVTRGKAESL
SIRSAKLNLDANISIQHGTPVLTVNHCVEILLHVANGSSWKQAYLKVLPV
RKGIKSY*
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mRNA from alignment at tig00004442_pilon:752241..753164-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10083.t1 ID=Gchil10083.t1|Name=Gchil10083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00004442_pilon:752241..753164- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCAACTCTCAGTCAGTTGTTTCGTCCCACTCAGCAAGAAACTGA
ATTACTGATGATTTCTAACCGAGAAACTCCTCCACAACCCCGACCACATG
AAGAACTGTCAAAGAACGCAAGAAAGAAGATAGCGCGCGAACGGCGTCTT
CAGGAACGAAAACAAGCGCGAAAGGCTGAAAGGCGAGAATTGAAGGTTCG
AGAAAAAATAAGAAAGCGACAGGAGAGAGAAGACACACTCAAACATCTTA
CGGCTGATCAGAAAGAACAACTATTTCGTGAGAAGGTTGAACACATGAGA
GCCGGACGTGTTGCTGAAAGAGCGAAGAAAGCCCAACTTCGGGAAGTTCT
GCTGAATAAATCCAAGTACAACGTCTGCATAGATCTTGGCTGGAATGAGC
AAATGTTCGAGAAAGAGAGAAAAAGTTTAGCCCGGCAGTTGGCGTACTCT
TATAGCATATTGCGAAAATATGCAGAGGAAGGATTAACACCTTTGCGCCT
TTCAATTGTTGGGATGGACGAGCACATCAAGCCCGTTCTATCCATCGCTG
CGCAAGGCTGGGAGTCATGGCCTCTTATTCTATCTGAAAAAGGTTTAACA
GAAACACACGATAGAAGAAGGCTCGTATACCTCACTCACGACGCTGAAGA
GGTTTTGGAGACTCTAGATCCTTCTGATATATACGTTATTGGTGGACTTG
TGGATAGAAATCGACTAAAGGGTGTTACACGGGGAAAAGCGGAGAGTTTA
TCCATCCGATCAGCTAAATTGAATTTAGACGCGAACATTTCTATACAACA
CGGAACGCCTGTTCTAACTGTGAATCACTGTGTTGAGATCTTGCTTCATG
TCGCCAACGGAAGCTCGTGGAAACAAGCTTACTTGAAGGTACTACCTGTT
CGCAAGGGAATTAAGAGCTATTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:752241..753164-

>Gchil10083.t1 ID=Gchil10083.t1|Name=Gchil10083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00004442_pilon:752241..753164- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCAACTCTCAGTCAGTTGTTTCGTCCCACTCAGCAAGAAACTGA
ATTACTGATGATTTCTAACCGAGAAACTCCTCCACAACCCCGACCACATG
AAGAACTGTCAAAGAACGCAAGAAAGAAGATAGCGCGCGAACGGCGTCTT
CAGGAACGAAAACAAGCGCGAAAGGCTGAAAGGCGAGAATTGAAGGTTCG
AGAAAAAATAAGAAAGCGACAGGAGAGAGAAGACACACTCAAACATCTTA
CGGCTGATCAGAAAGAACAACTATTTCGTGAGAAGGTTGAACACATGAGA
GCCGGACGTGTTGCTGAAAGAGCGAAGAAAGCCCAACTTCGGGAAGTTCT
GCTGAATAAATCCAAGTACAACGTCTGCATAGATCTTGGCTGGAATGAGC
AAATGTTCGAGAAAGAGAGAAAAAGTTTAGCCCGGCAGTTGGCGTACTCT
TATAGCATATTGCGAAAATATGCAGAGGAAGGATTAACACCTTTGCGCCT
TTCAATTGTTGGGATGGACGAGCACATCAAGCCCGTTCTATCCATCGCTG
CGCAAGGCTGGGAGTCATGGCCTCTTATTCTATCTGAAAAAGGTTTAACA
GAAACACACGATAGAAGAAGGCTCGTATACCTCACTCACGACGCTGAAGA
GGTTTTGGAGACTCTAGATCCTTCTGATATATACGTTATTGGTGGACTTG
TGGATAGAAATCGACTAAAGGGTGTTACACGGGGAAAAGCGGAGAGTTTA
TCCATCCGATCAGCTAAATTGAATTTAGACGCGAACATTTCTATACAACA
CGGAACGCCTGTTCTAACTGTGAATCACTGTGTTGAGATCTTGCTTCATG
TCGCCAACGGAAGCTCGTGGAAACAAGCTTACTTGAAGGTACTACCTGTT
CGCAAGGGAATTAAGAGCTATTGA
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