Gchil10082.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10082.t1
Unique NameGchil10082.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:749935..751182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707907.1
PFAMsRCC1
Max annot lvl2759|Eukaryota
Evalue2.37e-46
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10082Gchil10082Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 749935..751182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10082.t1.stop1Gchil10082.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 749935..749937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10082.t1.CDS1Gchil10082.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 749935..751182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10082.t1.exon1Gchil10082.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 749935..751182 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10082.t1.start1Gchil10082.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 751180..751182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10082.t1Gchil10082.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 749935..751182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10082.t1 ID=Gchil10082.t1|Name=Gchil10082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=416bp
MNSYNSLKTLLCLGFVSKSLVNLADSDSQSQDDSWIQWIFNEKDKDPELD
VRTLKQKVLSGTPGKVMVWGGDYGKVPRNVVGLQSNIIKVATGNSFGGAI
SSDNKVFGFYSKNGADLVQTIPIDGKPKHVEVMQSSREIVVLDSRGRIHS
STFGADGSFTPAMKLEGALKAMNIKHMKCGTEHCAAISDRGGVVTWGNSN
KYGQLGTLGATETQKEDPRIPRPVKFPKDVTLCDAACGDRHTVFLDRDGN
LYSVGCDRWAQLGVSAEPWLKKHESFVRIVQNASLLQGLAGAEVACGGQH
SVLLVKDGTVFSFGFNQWGQLGHHNYSSFGPPSPIAQYQIRAVSVSAGEN
HTCLVTDKGELMCIGSNEFGQLGNGTLQSSMKWKKVKARKRVIKPLYLYS
SGYTTAVVVEKDVPS*
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spliced messenger RNA

>Gchil10082.t1 ID=Gchil10082.t1|Name=Gchil10082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00004442_pilon:749935..751182- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCGTACAATTCACTCAAAACTTTGTTATGTCTTGGCTTCGTGTC
CAAATCTCTTGTGAATCTCGCCGATAGTGATTCCCAAAGTCAGGATGATT
CGTGGATACAATGGATTTTTAATGAAAAAGATAAAGATCCTGAACTAGAT
GTTAGGACTCTGAAGCAGAAAGTTTTGTCAGGGACTCCGGGAAAAGTAAT
GGTCTGGGGTGGTGACTACGGGAAAGTACCCCGGAATGTAGTTGGGCTCC
AGTCTAACATTATAAAGGTGGCAACAGGAAACAGTTTCGGGGGTGCAATC
TCCAGTGATAACAAAGTCTTTGGATTTTACAGCAAGAACGGTGCGGATTT
AGTTCAAACAATTCCAATTGATGGCAAGCCTAAACATGTTGAAGTGATGC
AGTCATCCCGCGAAATAGTGGTGCTAGATTCACGTGGACGGATCCATTCC
TCGACATTTGGGGCGGATGGGAGTTTCACACCGGCAATGAAACTTGAAGG
GGCCCTTAAGGCCATGAATATTAAGCATATGAAATGTGGAACAGAGCATT
GTGCTGCCATTTCCGATCGCGGAGGAGTTGTAACATGGGGCAACTCGAAT
AAGTATGGGCAGCTCGGAACTTTGGGTGCGACAGAGACACAAAAGGAAGA
TCCTCGAATTCCTCGTCCAGTGAAGTTCCCAAAAGATGTTACTTTGTGTG
ATGCGGCGTGCGGTGATAGGCATACTGTCTTTCTAGATAGAGATGGCAAC
CTGTACAGCGTAGGTTGTGATCGATGGGCGCAACTCGGAGTGTCTGCGGA
ACCATGGTTAAAGAAGCATGAAAGCTTTGTTCGCATAGTTCAGAATGCGA
GTCTGTTGCAGGGGCTCGCAGGTGCGGAAGTTGCATGCGGTGGTCAGCAT
AGTGTACTGCTAGTCAAAGATGGAACAGTGTTCTCGTTTGGTTTCAATCA
ATGGGGTCAACTTGGTCACCATAACTATTCATCATTTGGACCTCCTTCTC
CAATTGCCCAATATCAAATAAGAGCAGTATCTGTTAGTGCCGGAGAAAAT
CATACATGCCTCGTTACTGATAAGGGAGAGCTTATGTGCATTGGAAGCAA
TGAATTTGGCCAGCTTGGGAACGGCACTCTGCAATCGTCTATGAAATGGA
AAAAGGTCAAGGCACGAAAGAGAGTAATCAAGCCGTTATATCTGTATTCT
TCTGGATACACGACCGCGGTCGTCGTCGAAAAAGATGTGCCCTCATGA
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protein sequence of Gchil10082.t1

>Gchil10082.t1 ID=Gchil10082.t1|Name=Gchil10082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=416bp
MNSYNSLKTLLCLGFVSKSLVNLADSDSQSQDDSWIQWIFNEKDKDPELD
VRTLKQKVLSGTPGKVMVWGGDYGKVPRNVVGLQSNIIKVATGNSFGGAI
SSDNKVFGFYSKNGADLVQTIPIDGKPKHVEVMQSSREIVVLDSRGRIHS
STFGADGSFTPAMKLEGALKAMNIKHMKCGTEHCAAISDRGGVVTWGNSN
KYGQLGTLGATETQKEDPRIPRPVKFPKDVTLCDAACGDRHTVFLDRDGN
LYSVGCDRWAQLGVSAEPWLKKHESFVRIVQNASLLQGLAGAEVACGGQH
SVLLVKDGTVFSFGFNQWGQLGHHNYSSFGPPSPIAQYQIRAVSVSAGEN
HTCLVTDKGELMCIGSNEFGQLGNGTLQSSMKWKKVKARKRVIKPLYLYS
SGYTTAVVVEKDVPS*
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mRNA from alignment at tig00004442_pilon:749935..751182-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10082.t1 ID=Gchil10082.t1|Name=Gchil10082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00004442_pilon:749935..751182- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCGTACAATTCACTCAAAACTTTGTTATGTCTTGGCTTCGTGTC
CAAATCTCTTGTGAATCTCGCCGATAGTGATTCCCAAAGTCAGGATGATT
CGTGGATACAATGGATTTTTAATGAAAAAGATAAAGATCCTGAACTAGAT
GTTAGGACTCTGAAGCAGAAAGTTTTGTCAGGGACTCCGGGAAAAGTAAT
GGTCTGGGGTGGTGACTACGGGAAAGTACCCCGGAATGTAGTTGGGCTCC
AGTCTAACATTATAAAGGTGGCAACAGGAAACAGTTTCGGGGGTGCAATC
TCCAGTGATAACAAAGTCTTTGGATTTTACAGCAAGAACGGTGCGGATTT
AGTTCAAACAATTCCAATTGATGGCAAGCCTAAACATGTTGAAGTGATGC
AGTCATCCCGCGAAATAGTGGTGCTAGATTCACGTGGACGGATCCATTCC
TCGACATTTGGGGCGGATGGGAGTTTCACACCGGCAATGAAACTTGAAGG
GGCCCTTAAGGCCATGAATATTAAGCATATGAAATGTGGAACAGAGCATT
GTGCTGCCATTTCCGATCGCGGAGGAGTTGTAACATGGGGCAACTCGAAT
AAGTATGGGCAGCTCGGAACTTTGGGTGCGACAGAGACACAAAAGGAAGA
TCCTCGAATTCCTCGTCCAGTGAAGTTCCCAAAAGATGTTACTTTGTGTG
ATGCGGCGTGCGGTGATAGGCATACTGTCTTTCTAGATAGAGATGGCAAC
CTGTACAGCGTAGGTTGTGATCGATGGGCGCAACTCGGAGTGTCTGCGGA
ACCATGGTTAAAGAAGCATGAAAGCTTTGTTCGCATAGTTCAGAATGCGA
GTCTGTTGCAGGGGCTCGCAGGTGCGGAAGTTGCATGCGGTGGTCAGCAT
AGTGTACTGCTAGTCAAAGATGGAACAGTGTTCTCGTTTGGTTTCAATCA
ATGGGGTCAACTTGGTCACCATAACTATTCATCATTTGGACCTCCTTCTC
CAATTGCCCAATATCAAATAAGAGCAGTATCTGTTAGTGCCGGAGAAAAT
CATACATGCCTCGTTACTGATAAGGGAGAGCTTATGTGCATTGGAAGCAA
TGAATTTGGCCAGCTTGGGAACGGCACTCTGCAATCGTCTATGAAATGGA
AAAAGGTCAAGGCACGAAAGAGAGTAATCAAGCCGTTATATCTGTATTCT
TCTGGATACACGACCGCGGTCGTCGTCGAAAAAGATGTGCCCTCATGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:749935..751182-

>Gchil10082.t1 ID=Gchil10082.t1|Name=Gchil10082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00004442_pilon:749935..751182- (Gracilaria chilensis NLEC103_M9 male)
ATGAATTCGTACAATTCACTCAAAACTTTGTTATGTCTTGGCTTCGTGTC
CAAATCTCTTGTGAATCTCGCCGATAGTGATTCCCAAAGTCAGGATGATT
CGTGGATACAATGGATTTTTAATGAAAAAGATAAAGATCCTGAACTAGAT
GTTAGGACTCTGAAGCAGAAAGTTTTGTCAGGGACTCCGGGAAAAGTAAT
GGTCTGGGGTGGTGACTACGGGAAAGTACCCCGGAATGTAGTTGGGCTCC
AGTCTAACATTATAAAGGTGGCAACAGGAAACAGTTTCGGGGGTGCAATC
TCCAGTGATAACAAAGTCTTTGGATTTTACAGCAAGAACGGTGCGGATTT
AGTTCAAACAATTCCAATTGATGGCAAGCCTAAACATGTTGAAGTGATGC
AGTCATCCCGCGAAATAGTGGTGCTAGATTCACGTGGACGGATCCATTCC
TCGACATTTGGGGCGGATGGGAGTTTCACACCGGCAATGAAACTTGAAGG
GGCCCTTAAGGCCATGAATATTAAGCATATGAAATGTGGAACAGAGCATT
GTGCTGCCATTTCCGATCGCGGAGGAGTTGTAACATGGGGCAACTCGAAT
AAGTATGGGCAGCTCGGAACTTTGGGTGCGACAGAGACACAAAAGGAAGA
TCCTCGAATTCCTCGTCCAGTGAAGTTCCCAAAAGATGTTACTTTGTGTG
ATGCGGCGTGCGGTGATAGGCATACTGTCTTTCTAGATAGAGATGGCAAC
CTGTACAGCGTAGGTTGTGATCGATGGGCGCAACTCGGAGTGTCTGCGGA
ACCATGGTTAAAGAAGCATGAAAGCTTTGTTCGCATAGTTCAGAATGCGA
GTCTGTTGCAGGGGCTCGCAGGTGCGGAAGTTGCATGCGGTGGTCAGCAT
AGTGTACTGCTAGTCAAAGATGGAACAGTGTTCTCGTTTGGTTTCAATCA
ATGGGGTCAACTTGGTCACCATAACTATTCATCATTTGGACCTCCTTCTC
CAATTGCCCAATATCAAATAAGAGCAGTATCTGTTAGTGCCGGAGAAAAT
CATACATGCCTCGTTACTGATAAGGGAGAGCTTATGTGCATTGGAAGCAA
TGAATTTGGCCAGCTTGGGAACGGCACTCTGCAATCGTCTATGAAATGGA
AAAAGGTCAAGGCACGAAAGAGAGTAATCAAGCCGTTATATCTGTATTCT
TCTGGATACACGACCGCGGTCGTCGTCGAAAAAGATGTGCCCTCATGA
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