Gchil10080.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10080.t1
Unique Name	Gchil10080.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	502

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:739137..740642 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	575540.Isop_1668
PFAMs	Ceramidase_alk
Max annot lvl	203682\|Planctomycetes
Evalue	5.21e-63
EggNOG OGs	COG3356@1\|root,COG3356@2\|Bacteria,2IX5S@203682\|Planctomycetes
Description	Neutral/alkaline non-lysosomal ceramidase, N-terminal
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10080	Gchil10080	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 739137..740642 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10080.t1.start1	Gchil10080.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 739137..739139 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10080.t1.CDS1	Gchil10080.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 739137..740642 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10080.t1.exon1	Gchil10080.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 739137..740642 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10080.t1.stop1	Gchil10080.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 740640..740642 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10080.t1	Gchil10080.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 739137..740642 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:739137..740642+
coding sequence from alignment at tig00004442_pilon:739137..740642+

mRNA sequence

>Gchil10080.t1 ID=Gchil10080.t1|Name=Gchil10080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=502bp
MNRPGQRTLHRKQRTTRAKDLFFHRKRDVSLFLQKLFLENKLVVFAALAT
LVLCYVLLRGQTVGERSGESVWTVSISRVDITPKELVWLSGFSSRNRTAE
STQPLLPDFPLFARAIAIRNQTGRAKSLPLVVVSLDVIGFDHKFSASVLR
EVEREFGISRDRLRLCATHTHSGPVVRGNLAPLMPPDEKEQQKVARYTEW
LTKAVLQVIRGCVEGRQETVSMSFAEVTVPLATNRRQVVEAEFHGERGTT
EDRVPIMWFAKGSRVVAGLFGVAAHATILTSSYRYSGDYPGYAVKNLQDQ
TGGMWLFLAGCGGDQNIYPRGSLQMLQHHGSNLVNSILRAIRDGGTEVRS
AAVATDAYIDLHFARRYSAYELAIRARSKNAVEKRSADLLQTKGIGTDGK
TKAMYPFPLGVWRLGDVRIVFLGGEPTVGYCHDMKKAGATWIVGYCQDVM
GYVGTADVIREGGREGGERAAWYYGLPSAWSADTERRIMNSAHSMLTNLN
I*

spliced messenger RNA

>Gchil10080.t1 ID=Gchil10080.t1|Name=Gchil10080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00004442_pilon:739137..740642+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCCCCGGACAAAGAACGCTGCACCGCAAACAAAGAACAACGAG
AGCGAAGGACCTCTTCTTTCACCGCAAACGCGATGTCTCGCTTTTCCTCC
AAAAATTGTTTTTAGAAAACAAACTAGTAGTCTTCGCCGCCCTAGCTACT
TTAGTTCTCTGTTATGTATTACTTAGAGGGCAAACAGTGGGCGAAAGAAG
TGGGGAGAGCGTATGGACAGTTAGTATTTCCCGAGTGGACATCACTCCAA
AAGAACTTGTATGGCTATCAGGTTTTTCATCTCGCAATCGTACTGCAGAA
AGTACTCAGCCATTACTGCCTGATTTTCCTTTGTTTGCTCGAGCCATAGC
TATTCGGAATCAAACAGGTCGTGCAAAATCGCTGCCTCTTGTTGTCGTAT
CCCTTGATGTTATTGGATTCGATCACAAATTTTCTGCCTCTGTTCTGCGT
GAGGTTGAGAGAGAGTTTGGCATTTCTAGAGATCGACTTCGGTTGTGTGC
TACCCATACGCATTCCGGTCCGGTGGTGAGGGGGAACCTGGCTCCTCTGA
TGCCTCCTGACGAGAAAGAACAACAAAAGGTAGCGAGATATACTGAATGG
CTTACCAAAGCTGTGCTACAGGTAATTAGGGGATGTGTCGAGGGTCGACA
GGAAACGGTTTCTATGTCATTTGCAGAAGTTACGGTCCCACTCGCAACCA
ACCGGCGTCAGGTGGTGGAGGCGGAGTTTCACGGAGAGCGGGGAACGACA
GAAGATCGAGTTCCCATCATGTGGTTTGCAAAAGGAAGTAGAGTTGTTGC
GGGTTTATTCGGGGTGGCTGCACACGCGACAATCCTGACTTCCAGTTATC
GCTATTCCGGAGATTATCCTGGATATGCAGTGAAAAATCTTCAGGATCAA
ACTGGGGGGATGTGGCTGTTCCTCGCTGGGTGCGGCGGTGACCAAAATAT
ATACCCACGAGGAAGTCTGCAAATGTTGCAACACCATGGATCAAACTTAG
TCAACAGTATTCTGCGTGCTATTCGTGATGGTGGTACAGAAGTGAGGTCC
GCAGCAGTGGCTACTGATGCGTATATTGACCTACATTTCGCGAGACGATA
TAGTGCCTACGAACTCGCCATCCGAGCGCGATCGAAAAACGCGGTGGAAA
AACGTTCCGCTGACCTACTACAGACCAAGGGAATCGGAACTGACGGAAAG
ACGAAAGCCATGTATCCTTTTCCACTCGGTGTATGGAGGTTGGGCGATGT
CAGAATTGTTTTTCTAGGTGGTGAGCCAACTGTGGGATATTGCCATGATA
TGAAAAAAGCGGGCGCTACTTGGATCGTTGGATATTGTCAAGATGTAATG
GGCTACGTCGGAACTGCGGATGTAATTAGAGAGGGTGGGCGGGAAGGAGG
GGAACGGGCAGCTTGGTATTACGGTCTGCCTTCTGCTTGGTCGGCGGATA
CTGAGCGCCGCATCATGAATAGCGCACATTCGATGCTTACTAATCTTAAT
ATCTGA

protein sequence of Gchil10080.t1

>Gchil10080.t1 ID=Gchil10080.t1|Name=Gchil10080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=502bp
MNRPGQRTLHRKQRTTRAKDLFFHRKRDVSLFLQKLFLENKLVVFAALAT
LVLCYVLLRGQTVGERSGESVWTVSISRVDITPKELVWLSGFSSRNRTAE
STQPLLPDFPLFARAIAIRNQTGRAKSLPLVVVSLDVIGFDHKFSASVLR
EVEREFGISRDRLRLCATHTHSGPVVRGNLAPLMPPDEKEQQKVARYTEW
LTKAVLQVIRGCVEGRQETVSMSFAEVTVPLATNRRQVVEAEFHGERGTT
EDRVPIMWFAKGSRVVAGLFGVAAHATILTSSYRYSGDYPGYAVKNLQDQ
TGGMWLFLAGCGGDQNIYPRGSLQMLQHHGSNLVNSILRAIRDGGTEVRS
AAVATDAYIDLHFARRYSAYELAIRARSKNAVEKRSADLLQTKGIGTDGK
TKAMYPFPLGVWRLGDVRIVFLGGEPTVGYCHDMKKAGATWIVGYCQDVM
GYVGTADVIREGGREGGERAAWYYGLPSAWSADTERRIMNSAHSMLTNLN
I*

mRNA from alignment at tig00004442_pilon:739137..740642+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10080.t1 ID=Gchil10080.t1|Name=Gchil10080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1506bp|location=Sequence derived from alignment at tig00004442_pilon:739137..740642+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACCGCCCCGGACAAAGAACGCTGCACCGCAAACAAAGAACAACGAG
AGCGAAGGACCTCTTCTTTCACCGCAAACGCGATGTCTCGCTTTTCCTCC
AAAAATTGTTTTTAGAAAACAAACTAGTAGTCTTCGCCGCCCTAGCTACT
TTAGTTCTCTGTTATGTATTACTTAGAGGGCAAACAGTGGGCGAAAGAAG
TGGGGAGAGCGTATGGACAGTTAGTATTTCCCGAGTGGACATCACTCCAA
AAGAACTTGTATGGCTATCAGGTTTTTCATCTCGCAATCGTACTGCAGAA
AGTACTCAGCCATTACTGCCTGATTTTCCTTTGTTTGCTCGAGCCATAGC
TATTCGGAATCAAACAGGTCGTGCAAAATCGCTGCCTCTTGTTGTCGTAT
CCCTTGATGTTATTGGATTCGATCACAAATTTTCTGCCTCTGTTCTGCGT
GAGGTTGAGAGAGAGTTTGGCATTTCTAGAGATCGACTTCGGTTGTGTGC
TACCCATACGCATTCCGGTCCGGTGGTGAGGGGGAACCTGGCTCCTCTGA
TGCCTCCTGACGAGAAAGAACAACAAAAGGTAGCGAGATATACTGAATGG
CTTACCAAAGCTGTGCTACAGGTAATTAGGGGATGTGTCGAGGGTCGACA
GGAAACGGTTTCTATGTCATTTGCAGAAGTTACGGTCCCACTCGCAACCA
ACCGGCGTCAGGTGGTGGAGGCGGAGTTTCACGGAGAGCGGGGAACGACA
GAAGATCGAGTTCCCATCATGTGGTTTGCAAAAGGAAGTAGAGTTGTTGC
GGGTTTATTCGGGGTGGCTGCACACGCGACAATCCTGACTTCCAGTTATC
GCTATTCCGGAGATTATCCTGGATATGCAGTGAAAAATCTTCAGGATCAA
ACTGGGGGGATGTGGCTGTTCCTCGCTGGGTGCGGCGGTGACCAAAATAT
ATACCCACGAGGAAGTCTGCAAATGTTGCAACACCATGGATCAAACTTAG
TCAACAGTATTCTGCGTGCTATTCGTGATGGTGGTACAGAAGTGAGGTCC
GCAGCAGTGGCTACTGATGCGTATATTGACCTACATTTCGCGAGACGATA
TAGTGCCTACGAACTCGCCATCCGAGCGCGATCGAAAAACGCGGTGGAAA
AACGTTCCGCTGACCTACTACAGACCAAGGGAATCGGAACTGACGGAAAG
ACGAAAGCCATGTATCCTTTTCCACTCGGTGTATGGAGGTTGGGCGATGT
CAGAATTGTTTTTCTAGGTGGTGAGCCAACTGTGGGATATTGCCATGATA
TGAAAAAAGCGGGCGCTACTTGGATCGTTGGATATTGTCAAGATGTAATG
GGCTACGTCGGAACTGCGGATGTAATTAGAGAGGGTGGGCGGGAAGGAGG
GGAACGGGCAGCTTGGTATTACGGTCTGCCTTCTGCTTGGTCGGCGGATA
CTGAGCGCCGCATCATGAATAGCGCACATTCGATGCTTACTAATCTTAAT
ATCTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:739137..740642+

>Gchil10080.t1 ID=Gchil10080.t1|Name=Gchil10080.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1506bp|location=Sequence derived from alignment at tig00004442_pilon:739137..740642+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACCGCCCCGGACAAAGAACGCTGCACCGCAAACAAAGAACAACGAG
AGCGAAGGACCTCTTCTTTCACCGCAAACGCGATGTCTCGCTTTTCCTCC
AAAAATTGTTTTTAGAAAACAAACTAGTAGTCTTCGCCGCCCTAGCTACT
TTAGTTCTCTGTTATGTATTACTTAGAGGGCAAACAGTGGGCGAAAGAAG
TGGGGAGAGCGTATGGACAGTTAGTATTTCCCGAGTGGACATCACTCCAA
AAGAACTTGTATGGCTATCAGGTTTTTCATCTCGCAATCGTACTGCAGAA
AGTACTCAGCCATTACTGCCTGATTTTCCTTTGTTTGCTCGAGCCATAGC
TATTCGGAATCAAACAGGTCGTGCAAAATCGCTGCCTCTTGTTGTCGTAT
CCCTTGATGTTATTGGATTCGATCACAAATTTTCTGCCTCTGTTCTGCGT
GAGGTTGAGAGAGAGTTTGGCATTTCTAGAGATCGACTTCGGTTGTGTGC
TACCCATACGCATTCCGGTCCGGTGGTGAGGGGGAACCTGGCTCCTCTGA
TGCCTCCTGACGAGAAAGAACAACAAAAGGTAGCGAGATATACTGAATGG
CTTACCAAAGCTGTGCTACAGGTAATTAGGGGATGTGTCGAGGGTCGACA
GGAAACGGTTTCTATGTCATTTGCAGAAGTTACGGTCCCACTCGCAACCA
ACCGGCGTCAGGTGGTGGAGGCGGAGTTTCACGGAGAGCGGGGAACGACA
GAAGATCGAGTTCCCATCATGTGGTTTGCAAAAGGAAGTAGAGTTGTTGC
GGGTTTATTCGGGGTGGCTGCACACGCGACAATCCTGACTTCCAGTTATC
GCTATTCCGGAGATTATCCTGGATATGCAGTGAAAAATCTTCAGGATCAA
ACTGGGGGGATGTGGCTGTTCCTCGCTGGGTGCGGCGGTGACCAAAATAT
ATACCCACGAGGAAGTCTGCAAATGTTGCAACACCATGGATCAAACTTAG
TCAACAGTATTCTGCGTGCTATTCGTGATGGTGGTACAGAAGTGAGGTCC
GCAGCAGTGGCTACTGATGCGTATATTGACCTACATTTCGCGAGACGATA
TAGTGCCTACGAACTCGCCATCCGAGCGCGATCGAAAAACGCGGTGGAAA
AACGTTCCGCTGACCTACTACAGACCAAGGGAATCGGAACTGACGGAAAG
ACGAAAGCCATGTATCCTTTTCCACTCGGTGTATGGAGGTTGGGCGATGT
CAGAATTGTTTTTCTAGGTGGTGAGCCAACTGTGGGATATTGCCATGATA
TGAAAAAAGCGGGCGCTACTTGGATCGTTGGATATTGTCAAGATGTAATG
GGCTACGTCGGAACTGCGGATGTAATTAGAGAGGGTGGGCGGGAAGGAGG
GGAACGGGCAGCTTGGTATTACGGTCTGCCTTCTGCTTGGTCGGCGGATA
CTGAGCGCCGCATCATGAATAGCGCACATTCGATGCTTACTAATCTTAAT
ATCTGA