Gchil10077.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10077.t1
Unique Name	Gchil10077.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:730766..732646 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7176.CPIJ019283-PA
Preferred name	CSGALNACT1
PFAMs	CHGN
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00746
KEGG Reaction	R05929
KEGG Pathway	ko00532,ko01100,map00532,map01100
KEGG Module	M00058
GOs	GO:0000139,GO:0000271,GO:0001501,GO:0001503,GO:0001958,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0008037,GO:0008150,GO:0008152,GO:0008194,GO:0008283,GO:0008376,GO:0008955,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009611,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0019538,GO:0019752,GO:0030166,GO:0030173,GO:0030198,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0036075,GO:0042060,GO:0043062,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046398,GO:0046483,GO:0046872,GO:0047237,GO:0047238,GO:0048513,GO:0048705,GO:0048731,GO:0048856,GO:0050650,GO:0050651,GO:0050652,GO:0050653,GO:0050654,GO:0050655,GO:0050896,GO:0051216,GO:0055086,GO:0060348,GO:0060349,GO:0060350,GO:0061448,GO:0071704,GO:0071840,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue	8.41e-25
EggNOG OGs	KOG3588@1\|root,KOG3588@2759\|Eukaryota,38DJN@33154\|Opisthokonta,3BAVK@33208\|Metazoa,3CYIJ@33213\|Bilateria,41WHQ@6656\|Arthropoda,3SG8J@50557\|Insecta,44Z6C@7147\|Diptera,45GP0@7148\|Nematocera
EC	2.4.1.174,2.4.1.175
Description	Chondroitin N-acetylgalactosaminyltransferase
COG category	G
CAZy	GT7
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10077	Gchil10077	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 730766..732646 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10077.t1.start1	Gchil10077.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 730766..730768 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10077.t1.CDS1	Gchil10077.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 730766..732646 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10077.t1.exon1	Gchil10077.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 730766..732646 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10077.t1.stop1	Gchil10077.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 732644..732646 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10077.t1	Gchil10077.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 730766..732646 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:730766..732646+
coding sequence from alignment at tig00004442_pilon:730766..732646+

mRNA sequence

>Gchil10077.t1 ID=Gchil10077.t1|Name=Gchil10077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=627bp
MPLSSTTTRIMLPPPEPSRRAFRQHHRWLKHLQLVLGPKLATRKHLLLFV
ACLQAVAVVLLCTALVARHHVLQQLRASPAASSWTPQHGSGQHLLTHEPN
ERFVARVEQRASGGPFKALFLGPTRRFAAFGRSAACVPQACTLDHWAALG
ERACFLRNDRAKDRRGHNATVWRLVQSEWYYSEANDFACPAVVCRKQWLR
ELNLTKTLAYSVLDEHFKNETNSTLVSLVLGNSFVRLNPFWGLEYRLNGV
LTLETPRGADTLRESPRRASITLRRGFTQKFCDVALHDSVLAEEQPVYVI
VPYSGRVGMLRKFLVNAKSLLDDGVAMRVVLSVFGGEMHVQAAHLILNEL
GIGTMVGNLSDGNVIQIVESRGDFRGNFSRSQALYEGSTHAPAEGLLFFC
DVDVEIHKQFFDNCKYNTEKAHQVYYPVLYSLYPYGTEISKEHGYWRNGA
YGMVCVFNSDFRSRKVWGTESRRKAFSGWGMEGVALYKEFANVWQYTVFR
AVEPNLLHRWHAQVCDFNGNIAACLDTVLQNLGTQAFLASVIAGRGIDVR
KEPYFPEPIDFEEYKNDSAGSQRRKFEIPVPESVSDTSKLKQLESFYQTG
IRKSNRDRLLRYLSEKALQIFDRATG*

spliced messenger RNA

>Gchil10077.t1 ID=Gchil10077.t1|Name=Gchil10077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00004442_pilon:730766..732646+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTGTCGTCCACGACCACCAGAATAATGCTGCCTCCCCCCGAGCC
CTCGAGACGCGCCTTCCGTCAACACCACCGATGGCTGAAACACCTGCAGC
TCGTCTTGGGGCCAAAGTTAGCCACCAGGAAACACCTCCTGCTGTTCGTC
GCCTGTCTGCAGGCGGTGGCCGTCGTGCTGCTGTGCACGGCGCTCGTGGC
GAGGCACCACGTTCTCCAGCAGCTCCGCGCCTCCCCCGCCGCCTCGTCGT
GGACGCCCCAGCACGGATCCGGGCAACACTTGCTTACGCACGAGCCTAAC
GAACGCTTCGTCGCGCGCGTCGAGCAGCGCGCGTCTGGGGGGCCTTTCAA
AGCGCTCTTCCTCGGTCCGACGCGCCGTTTTGCCGCGTTTGGCCGTTCGG
CGGCTTGTGTGCCGCAGGCGTGCACGCTGGACCATTGGGCTGCGCTGGGA
GAGCGCGCGTGTTTTCTGCGAAACGACCGCGCAAAGGATCGGCGCGGCCA
CAACGCCACCGTGTGGCGTCTCGTGCAAAGCGAGTGGTATTACTCGGAGG
CTAACGATTTCGCCTGTCCTGCCGTCGTTTGTCGAAAACAGTGGCTTCGC
GAGCTCAATCTCACGAAAACTCTCGCCTATTCCGTGTTGGATGAGCATTT
CAAGAATGAGACCAATTCAACACTCGTCAGTCTCGTGCTGGGGAACTCTT
TCGTGCGTCTCAACCCGTTCTGGGGGCTGGAGTACAGACTGAACGGCGTC
CTCACGCTCGAGACTCCGCGCGGTGCCGACACTTTGCGCGAGTCCCCAAG
AAGGGCATCAATCACGTTGCGCAGAGGTTTCACTCAGAAGTTTTGCGACG
TTGCACTGCACGACAGCGTTTTGGCGGAAGAACAACCTGTGTACGTCATT
GTGCCTTACTCCGGGCGTGTTGGTATGCTTCGTAAATTCCTTGTCAACGC
GAAGAGTTTGCTTGATGACGGCGTCGCCATGCGGGTCGTACTATCGGTGT
TTGGTGGTGAAATGCATGTCCAAGCAGCCCATCTCATCCTCAATGAGCTT
GGCATCGGTACCATGGTCGGGAATTTGTCGGATGGCAACGTCATTCAGAT
TGTCGAAAGCCGTGGCGATTTCCGTGGTAACTTCTCTAGGTCTCAGGCGC
TGTATGAAGGATCTACTCACGCCCCGGCCGAGGGTCTGCTCTTCTTTTGC
GATGTTGACGTTGAAATTCACAAACAGTTCTTCGATAATTGCAAATACAA
TACAGAGAAGGCCCACCAGGTTTACTATCCAGTCTTGTACAGCCTGTATC
CGTATGGCACAGAAATTTCCAAGGAGCACGGCTACTGGCGCAACGGTGCC
TACGGAATGGTCTGCGTGTTCAACAGCGATTTCAGAAGTCGAAAAGTGTG
GGGCACGGAAAGTAGACGAAAGGCCTTCTCGGGATGGGGCATGGAAGGTG
TGGCTCTCTACAAGGAATTCGCAAACGTATGGCAGTACACCGTGTTTCGA
GCGGTGGAACCGAATTTACTACATCGGTGGCACGCGCAAGTGTGCGACTT
CAATGGAAACATAGCAGCATGCCTTGATACAGTTTTGCAGAATCTCGGAA
CGCAGGCCTTCTTGGCCTCAGTGATAGCTGGCCGGGGGATTGATGTTCGG
AAAGAGCCATATTTTCCTGAACCAATTGATTTTGAGGAATACAAGAACGA
TTCAGCTGGTAGTCAGCGCCGAAAATTCGAGATTCCAGTTCCCGAGTCTG
TTTCTGATACATCGAAACTGAAGCAGCTGGAATCCTTCTATCAGACTGGG
ATCCGAAAATCAAATCGAGACCGCCTGCTTCGATATCTTTCAGAAAAGGC
ACTGCAAATCTTTGACAGGGCAACGGGCTAA

protein sequence of Gchil10077.t1

>Gchil10077.t1 ID=Gchil10077.t1|Name=Gchil10077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=627bp
MPLSSTTTRIMLPPPEPSRRAFRQHHRWLKHLQLVLGPKLATRKHLLLFV
ACLQAVAVVLLCTALVARHHVLQQLRASPAASSWTPQHGSGQHLLTHEPN
ERFVARVEQRASGGPFKALFLGPTRRFAAFGRSAACVPQACTLDHWAALG
ERACFLRNDRAKDRRGHNATVWRLVQSEWYYSEANDFACPAVVCRKQWLR
ELNLTKTLAYSVLDEHFKNETNSTLVSLVLGNSFVRLNPFWGLEYRLNGV
LTLETPRGADTLRESPRRASITLRRGFTQKFCDVALHDSVLAEEQPVYVI
VPYSGRVGMLRKFLVNAKSLLDDGVAMRVVLSVFGGEMHVQAAHLILNEL
GIGTMVGNLSDGNVIQIVESRGDFRGNFSRSQALYEGSTHAPAEGLLFFC
DVDVEIHKQFFDNCKYNTEKAHQVYYPVLYSLYPYGTEISKEHGYWRNGA
YGMVCVFNSDFRSRKVWGTESRRKAFSGWGMEGVALYKEFANVWQYTVFR
AVEPNLLHRWHAQVCDFNGNIAACLDTVLQNLGTQAFLASVIAGRGIDVR
KEPYFPEPIDFEEYKNDSAGSQRRKFEIPVPESVSDTSKLKQLESFYQTG
IRKSNRDRLLRYLSEKALQIFDRATG*

mRNA from alignment at tig00004442_pilon:730766..732646+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10077.t1 ID=Gchil10077.t1|Name=Gchil10077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00004442_pilon:730766..732646+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCTTGTCGTCCACGACCACCAGAATAATGCTGCCTCCCCCCGAGCC
CTCGAGACGCGCCTTCCGTCAACACCACCGATGGCTGAAACACCTGCAGC
TCGTCTTGGGGCCAAAGTTAGCCACCAGGAAACACCTCCTGCTGTTCGTC
GCCTGTCTGCAGGCGGTGGCCGTCGTGCTGCTGTGCACGGCGCTCGTGGC
GAGGCACCACGTTCTCCAGCAGCTCCGCGCCTCCCCCGCCGCCTCGTCGT
GGACGCCCCAGCACGGATCCGGGCAACACTTGCTTACGCACGAGCCTAAC
GAACGCTTCGTCGCGCGCGTCGAGCAGCGCGCGTCTGGGGGGCCTTTCAA
AGCGCTCTTCCTCGGTCCGACGCGCCGTTTTGCCGCGTTTGGCCGTTCGG
CGGCTTGTGTGCCGCAGGCGTGCACGCTGGACCATTGGGCTGCGCTGGGA
GAGCGCGCGTGTTTTCTGCGAAACGACCGCGCAAAGGATCGGCGCGGCCA
CAACGCCACCGTGTGGCGTCTCGTGCAAAGCGAGTGGTATTACTCGGAGG
CTAACGATTTCGCCTGTCCTGCCGTCGTTTGTCGAAAACAGTGGCTTCGC
GAGCTCAATCTCACGAAAACTCTCGCCTATTCCGTGTTGGATGAGCATTT
CAAGAATGAGACCAATTCAACACTCGTCAGTCTCGTGCTGGGGAACTCTT
TCGTGCGTCTCAACCCGTTCTGGGGGCTGGAGTACAGACTGAACGGCGTC
CTCACGCTCGAGACTCCGCGCGGTGCCGACACTTTGCGCGAGTCCCCAAG
AAGGGCATCAATCACGTTGCGCAGAGGTTTCACTCAGAAGTTTTGCGACG
TTGCACTGCACGACAGCGTTTTGGCGGAAGAACAACCTGTGTACGTCATT
GTGCCTTACTCCGGGCGTGTTGGTATGCTTCGTAAATTCCTTGTCAACGC
GAAGAGTTTGCTTGATGACGGCGTCGCCATGCGGGTCGTACTATCGGTGT
TTGGTGGTGAAATGCATGTCCAAGCAGCCCATCTCATCCTCAATGAGCTT
GGCATCGGTACCATGGTCGGGAATTTGTCGGATGGCAACGTCATTCAGAT
TGTCGAAAGCCGTGGCGATTTCCGTGGTAACTTCTCTAGGTCTCAGGCGC
TGTATGAAGGATCTACTCACGCCCCGGCCGAGGGTCTGCTCTTCTTTTGC
GATGTTGACGTTGAAATTCACAAACAGTTCTTCGATAATTGCAAATACAA
TACAGAGAAGGCCCACCAGGTTTACTATCCAGTCTTGTACAGCCTGTATC
CGTATGGCACAGAAATTTCCAAGGAGCACGGCTACTGGCGCAACGGTGCC
TACGGAATGGTCTGCGTGTTCAACAGCGATTTCAGAAGTCGAAAAGTGTG
GGGCACGGAAAGTAGACGAAAGGCCTTCTCGGGATGGGGCATGGAAGGTG
TGGCTCTCTACAAGGAATTCGCAAACGTATGGCAGTACACCGTGTTTCGA
GCGGTGGAACCGAATTTACTACATCGGTGGCACGCGCAAGTGTGCGACTT
CAATGGAAACATAGCAGCATGCCTTGATACAGTTTTGCAGAATCTCGGAA
CGCAGGCCTTCTTGGCCTCAGTGATAGCTGGCCGGGGGATTGATGTTCGG
AAAGAGCCATATTTTCCTGAACCAATTGATTTTGAGGAATACAAGAACGA
TTCAGCTGGTAGTCAGCGCCGAAAATTCGAGATTCCAGTTCCCGAGTCTG
TTTCTGATACATCGAAACTGAAGCAGCTGGAATCCTTCTATCAGACTGGG
ATCCGAAAATCAAATCGAGACCGCCTGCTTCGATATCTTTCAGAAAAGGC
ACTGCAAATCTTTGACAGGGCAACGGGCTAA

Coding sequence (CDS) from alignment at tig00004442_pilon:730766..732646+

>Gchil10077.t1 ID=Gchil10077.t1|Name=Gchil10077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1881bp|location=Sequence derived from alignment at tig00004442_pilon:730766..732646+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCTTGTCGTCCACGACCACCAGAATAATGCTGCCTCCCCCCGAGCC
CTCGAGACGCGCCTTCCGTCAACACCACCGATGGCTGAAACACCTGCAGC
TCGTCTTGGGGCCAAAGTTAGCCACCAGGAAACACCTCCTGCTGTTCGTC
GCCTGTCTGCAGGCGGTGGCCGTCGTGCTGCTGTGCACGGCGCTCGTGGC
GAGGCACCACGTTCTCCAGCAGCTCCGCGCCTCCCCCGCCGCCTCGTCGT
GGACGCCCCAGCACGGATCCGGGCAACACTTGCTTACGCACGAGCCTAAC
GAACGCTTCGTCGCGCGCGTCGAGCAGCGCGCGTCTGGGGGGCCTTTCAA
AGCGCTCTTCCTCGGTCCGACGCGCCGTTTTGCCGCGTTTGGCCGTTCGG
CGGCTTGTGTGCCGCAGGCGTGCACGCTGGACCATTGGGCTGCGCTGGGA
GAGCGCGCGTGTTTTCTGCGAAACGACCGCGCAAAGGATCGGCGCGGCCA
CAACGCCACCGTGTGGCGTCTCGTGCAAAGCGAGTGGTATTACTCGGAGG
CTAACGATTTCGCCTGTCCTGCCGTCGTTTGTCGAAAACAGTGGCTTCGC
GAGCTCAATCTCACGAAAACTCTCGCCTATTCCGTGTTGGATGAGCATTT
CAAGAATGAGACCAATTCAACACTCGTCAGTCTCGTGCTGGGGAACTCTT
TCGTGCGTCTCAACCCGTTCTGGGGGCTGGAGTACAGACTGAACGGCGTC
CTCACGCTCGAGACTCCGCGCGGTGCCGACACTTTGCGCGAGTCCCCAAG
AAGGGCATCAATCACGTTGCGCAGAGGTTTCACTCAGAAGTTTTGCGACG
TTGCACTGCACGACAGCGTTTTGGCGGAAGAACAACCTGTGTACGTCATT
GTGCCTTACTCCGGGCGTGTTGGTATGCTTCGTAAATTCCTTGTCAACGC
GAAGAGTTTGCTTGATGACGGCGTCGCCATGCGGGTCGTACTATCGGTGT
TTGGTGGTGAAATGCATGTCCAAGCAGCCCATCTCATCCTCAATGAGCTT
GGCATCGGTACCATGGTCGGGAATTTGTCGGATGGCAACGTCATTCAGAT
TGTCGAAAGCCGTGGCGATTTCCGTGGTAACTTCTCTAGGTCTCAGGCGC
TGTATGAAGGATCTACTCACGCCCCGGCCGAGGGTCTGCTCTTCTTTTGC
GATGTTGACGTTGAAATTCACAAACAGTTCTTCGATAATTGCAAATACAA
TACAGAGAAGGCCCACCAGGTTTACTATCCAGTCTTGTACAGCCTGTATC
CGTATGGCACAGAAATTTCCAAGGAGCACGGCTACTGGCGCAACGGTGCC
TACGGAATGGTCTGCGTGTTCAACAGCGATTTCAGAAGTCGAAAAGTGTG
GGGCACGGAAAGTAGACGAAAGGCCTTCTCGGGATGGGGCATGGAAGGTG
TGGCTCTCTACAAGGAATTCGCAAACGTATGGCAGTACACCGTGTTTCGA
GCGGTGGAACCGAATTTACTACATCGGTGGCACGCGCAAGTGTGCGACTT
CAATGGAAACATAGCAGCATGCCTTGATACAGTTTTGCAGAATCTCGGAA
CGCAGGCCTTCTTGGCCTCAGTGATAGCTGGCCGGGGGATTGATGTTCGG
AAAGAGCCATATTTTCCTGAACCAATTGATTTTGAGGAATACAAGAACGA
TTCAGCTGGTAGTCAGCGCCGAAAATTCGAGATTCCAGTTCCCGAGTCTG
TTTCTGATACATCGAAACTGAAGCAGCTGGAATCCTTCTATCAGACTGGG
ATCCGAAAATCAAATCGAGACCGCCTGCTTCGATATCTTTCAGAAAAGGC
ACTGCAAATCTTTGACAGGGCAACGGGCTAA