Gchil10076.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10076.t1
Unique NameGchil10076.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:686045..686800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog181119.XP_005533411.1
Preferred nameFTSJ1
PFAMsFtsJ
Max annot lvl2759|Eukaryota
KEGG koko:K02427,ko:K14820,ko:K14864
GOsGO:0001510,GO:0002181,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008757,GO:0009020,GO:0009058,GO:0009059,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016427,GO:0016740,GO:0016741,GO:0019538,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0043043,GO:0043170,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052666,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue1.23e-35
EggNOG OGsCOG0293@1|root,KOG1099@2759|Eukaryota
EC2.1.1.166,2.1.1.205
DescriptiontRNA methyltransferase activity
COG categoryJ
BRITEko00000,ko01000,ko03009,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10076Gchil10076Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 686045..686800 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10076.t1.start1Gchil10076.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 686045..686047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10076.t1.CDS1Gchil10076.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 686045..686800 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10076.t1.exon1Gchil10076.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 686045..686800 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10076.t1.stop1Gchil10076.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 686798..686800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10076.t1Gchil10076.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 686045..686800 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10076.t1 ID=Gchil10076.t1|Name=Gchil10076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MARGAEHRPDVYYRGAKASALRARSAFKLAQLDRRFALLDAAAAAAAPPP
FAVLDLCAAPGSWAQYVASRLPPSASAAAPAIVLAIDLQRVRRIPRVVPL
QLDLTRRDAPRCVAAALRSLCSPPCVPLALCDGAADVAGLRALDAFAHAP
LLAAVLRVARRTLRHGGTLVVKLFVTTHAPHRALVLAQLRLLFERVQLVK
PRASRVASAETFAVCRGFNARCPPDAPARFDAFVRCGDLGAWDVRLTPLC
S*
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spliced messenger RNA

>Gchil10076.t1 ID=Gchil10076.t1|Name=Gchil10076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004442_pilon:686045..686800+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCGGCGCCGAGCACCGTCCCGACGTCTACTACCGCGGCGCCAA
GGCCAGCGCGCTGCGCGCGCGCTCCGCCTTCAAGCTGGCGCAGCTGGACC
GCCGCTTCGCCCTGCTCGATgccgccgccgccgccgccgccccgccgccC
TTCGCCGTGCTCGACCTGTGCGCCGCGCCCGGCAGCTGGGCGCAGTAcgt
cgcgtcgcgtctccctccgtccgcgtccgcggcggcacccgcCATCGTGT
TGGCCATCGACCTGCAGCGCGTGCGTCGCATCCCCCGCGTCGTGCCGCTG
CAGCTCGACCTCACGCGCCGCGACGCCCCCCGCTGCGTCGCCGCCGCCCT
GCGCTCCCTTTGTTCGCCGCCTTGCGTGCCGCTCGCGCTCTGCGACGGCG
CCGCCGACGTGGCCGGCCTACGCGCGCTCGACGCCTTCGCGCACGCCCCG
TTGCTTGCCGCCGTGTTGCGCGTCGCGCGCCGCACTTTGCGCCACGGCGG
CACGCTCGTTGTCAAGCTGTTTGTCACCACACACGCGCCGCATCGCGCGT
TGGTGCTGGCGCAGTTGCGACTGTTGTTTGAGCGCGTGCAGCTGGTTAAG
CCGCGCGCTAGCCGCGTTGCGTCGGCGGAGACTTTTGCCGTGTGTCGTGG
TTTCAACGCGCGTTGCCCGCCGGACGCGCCGGCACGCTTTGACGCGTTTG
TGCGCTGTGGTGACTTGGGCGCGTGGGATGTGCGCTTGACGCCGCTCTGT
AGCTGA
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protein sequence of Gchil10076.t1

>Gchil10076.t1 ID=Gchil10076.t1|Name=Gchil10076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MARGAEHRPDVYYRGAKASALRARSAFKLAQLDRRFALLDAAAAAAAPPP
FAVLDLCAAPGSWAQYVASRLPPSASAAAPAIVLAIDLQRVRRIPRVVPL
QLDLTRRDAPRCVAAALRSLCSPPCVPLALCDGAADVAGLRALDAFAHAP
LLAAVLRVARRTLRHGGTLVVKLFVTTHAPHRALVLAQLRLLFERVQLVK
PRASRVASAETFAVCRGFNARCPPDAPARFDAFVRCGDLGAWDVRLTPLC
S*
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mRNA from alignment at tig00004442_pilon:686045..686800+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10076.t1 ID=Gchil10076.t1|Name=Gchil10076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004442_pilon:686045..686800+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGCGGCGCCGAGCACCGTCCCGACGTCTACTACCGCGGCGCCAA
GGCCAGCGCGCTGCGCGCGCGCTCCGCCTTCAAGCTGGCGCAGCTGGACC
GCCGCTTCGCCCTGCTCGATgccgccgccgccgccgccgccccgccgccC
TTCGCCGTGCTCGACCTGTGCGCCGCGCCCGGCAGCTGGGCGCAGTAcgt
cgcgtcgcgtctccctccgtccgcgtccgcggcggcacccgcCATCGTGT
TGGCCATCGACCTGCAGCGCGTGCGTCGCATCCCCCGCGTCGTGCCGCTG
CAGCTCGACCTCACGCGCCGCGACGCCCCCCGCTGCGTCGCCGCCGCCCT
GCGCTCCCTTTGTTCGCCGCCTTGCGTGCCGCTCGCGCTCTGCGACGGCG
CCGCCGACGTGGCCGGCCTACGCGCGCTCGACGCCTTCGCGCACGCCCCG
TTGCTTGCCGCCGTGTTGCGCGTCGCGCGCCGCACTTTGCGCCACGGCGG
CACGCTCGTTGTCAAGCTGTTTGTCACCACACACGCGCCGCATCGCGCGT
TGGTGCTGGCGCAGTTGCGACTGTTGTTTGAGCGCGTGCAGCTGGTTAAG
CCGCGCGCTAGCCGCGTTGCGTCGGCGGAGACTTTTGCCGTGTGTCGTGG
TTTCAACGCGCGTTGCCCGCCGGACGCGCCGGCACGCTTTGACGCGTTTG
TGCGCTGTGGTGACTTGGGCGCGTGGGATGTGCGCTTGACGCCGCTCTGT
AGCTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:686045..686800+

>Gchil10076.t1 ID=Gchil10076.t1|Name=Gchil10076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00004442_pilon:686045..686800+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGCGGCGCCGAGCACCGTCCCGACGTCTACTACCGCGGCGCCAA
GGCCAGCGCGCTGCGCGCGCGCTCCGCCTTCAAGCTGGCGCAGCTGGACC
GCCGCTTCGCCCTGCTCGATgccgccgccgccgccgccgccccgccgccC
TTCGCCGTGCTCGACCTGTGCGCCGCGCCCGGCAGCTGGGCGCAGTAcgt
cgcgtcgcgtctccctccgtccgcgtccgcggcggcacccgcCATCGTGT
TGGCCATCGACCTGCAGCGCGTGCGTCGCATCCCCCGCGTCGTGCCGCTG
CAGCTCGACCTCACGCGCCGCGACGCCCCCCGCTGCGTCGCCGCCGCCCT
GCGCTCCCTTTGTTCGCCGCCTTGCGTGCCGCTCGCGCTCTGCGACGGCG
CCGCCGACGTGGCCGGCCTACGCGCGCTCGACGCCTTCGCGCACGCCCCG
TTGCTTGCCGCCGTGTTGCGCGTCGCGCGCCGCACTTTGCGCCACGGCGG
CACGCTCGTTGTCAAGCTGTTTGTCACCACACACGCGCCGCATCGCGCGT
TGGTGCTGGCGCAGTTGCGACTGTTGTTTGAGCGCGTGCAGCTGGTTAAG
CCGCGCGCTAGCCGCGTTGCGTCGGCGGAGACTTTTGCCGTGTGTCGTGG
TTTCAACGCGCGTTGCCCGCCGGACGCGCCGGCACGCTTTGACGCGTTTG
TGCGCTGTGGTGACTTGGGCGCGTGGGATGTGCGCTTGACGCCGCTCTGT
AGCTGA
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