Gchil10072.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10072.t1
Unique Name	Gchil10072.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:675209..675952 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121904.ARBP01000006_gene3987
Preferred name	infC
PFAMs	IF3_C,IF3_N
Max annot lvl	976\|Bacteroidetes
KEGG ko	ko:K02520
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Evalue	5e-14
EggNOG OGs	COG0290@1\|root,COG0290@2\|Bacteria,4NIZ5@976\|Bacteroidetes,47PC6@768503\|Cytophagia
Description	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10072	Gchil10072	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 675209..675952 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10072.t1.start1	Gchil10072.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 675209..675211 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10072.t1.CDS1	Gchil10072.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 675209..675952 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10072.t1.exon1	Gchil10072.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 675209..675952 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10072.t1.stop1	Gchil10072.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 675950..675952 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10072.t1	Gchil10072.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 675209..675952 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:675209..675952+
coding sequence from alignment at tig00004442_pilon:675209..675952+

mRNA sequence

>Gchil10072.t1 ID=Gchil10072.t1|Name=Gchil10072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=248bp
MAVRAAAQLWRFRVVALSAHPRSRAVASRADQPQLNEALLKHASVRLVSE
SGADRGLMSPQQALREARMQHKDLMQITTAKPIAVGTAPLPVVRILDYAS
FEEHRQKKRYKQHKAVKQQQMQQRKHSVLKQIRFSPLTDRNDMRIKLKHA
AQFLIDGYRVKIYMQFRRGQRKYEATAKQSLTNAALALAPFGTCQALPTR
ASIQQLFAPQDEQQPDAQRPNKPLEVVFQPLPKAQREKLTIDALTTP*

spliced messenger RNA

>Gchil10072.t1 ID=Gchil10072.t1|Name=Gchil10072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00004442_pilon:675209..675952+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTGCGTGCGGCTGCGCAGCTGTGGCGCTTCCGCGTCGTCGCGCT
GAGCGCGCACCCACGGTCCCGCGCCGTTGCGAGTCGCGCCGACCAACCGC
AGCTCAACGAGGCGCTCCTCAAGCATGCCTCCGTGCGGCTCGTCTCCGAG
TCCGGTGCGGACCGTGGCTTGATGTCACCGCAACAAGCGCTGCGCGAGGC
GCGCATGCAGCACAAGGATCTCATGCAGATCACCACCGCGAAGCCCATTG
CGGTCGGCACCGCGCCGCTGCCCGTTGTGCGCATCTTGGACTACGCCTCG
TTTGAGGAGCACCGGCAGAAGAAGAGGTACAAACAACACAAGGCCGTCAA
ACAACAGCAGATGCAACAGCGCAAGCATTCTGTTTTGAAACAGATCCGCT
TTTCGCCGCTTACGGATCGCAATGACATGCGCATTAAGCTCAAACATGCC
GCGCAGTTTCTTATCGATGGGTATCGTGTAAAGATCTACATGCAGTTTAG
GAGAGGCCAGCGAAAATATGAAGCTACTGCCAAACAATCCCTTACCAACG
CCGCACTCGCGTTAGCCCCGTTCGGAACTTGCCAAGCGCTACCTACGCGC
GCATCTATACAACAGCTGTTCGCCCCTCAGGACGAGCAGCAACCTGATGC
ACAGCGCCCAAACAAACCTCTGGAGGTCGTGTTTCAGCCTTTGCCTAAAG
CTCAAAGAGAGAAGCTCACCATAGATGCATTAACAACCCCATAG

protein sequence of Gchil10072.t1

>Gchil10072.t1 ID=Gchil10072.t1|Name=Gchil10072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=248bp
MAVRAAAQLWRFRVVALSAHPRSRAVASRADQPQLNEALLKHASVRLVSE
SGADRGLMSPQQALREARMQHKDLMQITTAKPIAVGTAPLPVVRILDYAS
FEEHRQKKRYKQHKAVKQQQMQQRKHSVLKQIRFSPLTDRNDMRIKLKHA
AQFLIDGYRVKIYMQFRRGQRKYEATAKQSLTNAALALAPFGTCQALPTR
ASIQQLFAPQDEQQPDAQRPNKPLEVVFQPLPKAQREKLTIDALTTP*

mRNA from alignment at tig00004442_pilon:675209..675952+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10072.t1 ID=Gchil10072.t1|Name=Gchil10072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00004442_pilon:675209..675952+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTGCGTGCGGCTGCGCAGCTGTGGCGCTTCCGCGTCGTCGCGCT
GAGCGCGCACCCACGGTCCCGCGCCGTTGCGAGTCGCGCCGACCAACCGC
AGCTCAACGAGGCGCTCCTCAAGCATGCCTCCGTGCGGCTCGTCTCCGAG
TCCGGTGCGGACCGTGGCTTGATGTCACCGCAACAAGCGCTGCGCGAGGC
GCGCATGCAGCACAAGGATCTCATGCAGATCACCACCGCGAAGCCCATTG
CGGTCGGCACCGCGCCGCTGCCCGTTGTGCGCATCTTGGACTACGCCTCG
TTTGAGGAGCACCGGCAGAAGAAGAGGTACAAACAACACAAGGCCGTCAA
ACAACAGCAGATGCAACAGCGCAAGCATTCTGTTTTGAAACAGATCCGCT
TTTCGCCGCTTACGGATCGCAATGACATGCGCATTAAGCTCAAACATGCC
GCGCAGTTTCTTATCGATGGGTATCGTGTAAAGATCTACATGCAGTTTAG
GAGAGGCCAGCGAAAATATGAAGCTACTGCCAAACAATCCCTTACCAACG
CCGCACTCGCGTTAGCCCCGTTCGGAACTTGCCAAGCGCTACCTACGCGC
GCATCTATACAACAGCTGTTCGCCCCTCAGGACGAGCAGCAACCTGATGC
ACAGCGCCCAAACAAACCTCTGGAGGTCGTGTTTCAGCCTTTGCCTAAAG
CTCAAAGAGAGAAGCTCACCATAGATGCATTAACAACCCCATAG

Coding sequence (CDS) from alignment at tig00004442_pilon:675209..675952+

>Gchil10072.t1 ID=Gchil10072.t1|Name=Gchil10072.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00004442_pilon:675209..675952+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTGCGTGCGGCTGCGCAGCTGTGGCGCTTCCGCGTCGTCGCGCT
GAGCGCGCACCCACGGTCCCGCGCCGTTGCGAGTCGCGCCGACCAACCGC
AGCTCAACGAGGCGCTCCTCAAGCATGCCTCCGTGCGGCTCGTCTCCGAG
TCCGGTGCGGACCGTGGCTTGATGTCACCGCAACAAGCGCTGCGCGAGGC
GCGCATGCAGCACAAGGATCTCATGCAGATCACCACCGCGAAGCCCATTG
CGGTCGGCACCGCGCCGCTGCCCGTTGTGCGCATCTTGGACTACGCCTCG
TTTGAGGAGCACCGGCAGAAGAAGAGGTACAAACAACACAAGGCCGTCAA
ACAACAGCAGATGCAACAGCGCAAGCATTCTGTTTTGAAACAGATCCGCT
TTTCGCCGCTTACGGATCGCAATGACATGCGCATTAAGCTCAAACATGCC
GCGCAGTTTCTTATCGATGGGTATCGTGTAAAGATCTACATGCAGTTTAG
GAGAGGCCAGCGAAAATATGAAGCTACTGCCAAACAATCCCTTACCAACG
CCGCACTCGCGTTAGCCCCGTTCGGAACTTGCCAAGCGCTACCTACGCGC
GCATCTATACAACAGCTGTTCGCCCCTCAGGACGAGCAGCAACCTGATGC
ACAGCGCCCAAACAAACCTCTGGAGGTCGTGTTTCAGCCTTTGCCTAAAG
CTCAAAGAGAGAAGCTCACCATAGATGCATTAACAACCCCATAG