Gchil10071.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10071.t1
Unique NameGchil10071.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:673857..674729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004513742.1
PFAMsAMP-binding,AMP-binding_C
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00179
KEGG koko:K22133
KEGG ReactionR01558
KEGG Pathwayko00630,ko01100,map00630,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006082,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009987,GO:0010029,GO:0010030,GO:0010033,GO:0010035,GO:0010038,GO:0010154,GO:0010214,GO:0016054,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019752,GO:0022414,GO:0030054,GO:0032501,GO:0032502,GO:0033609,GO:0033611,GO:0042221,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043649,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046686,GO:0048046,GO:0048316,GO:0048518,GO:0048580,GO:0048582,GO:0048608,GO:0048731,GO:0048856,GO:0050203,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0055044,GO:0061458,GO:0065007,GO:0071704,GO:0098542,GO:1900140,GO:1901575,GO:2000026
Evalue4.26e-09
EggNOG OGsCOG0318@1|root,KOG1176@2759|Eukaryota,37JNB@33090|Viridiplantae,3GB78@35493|Streptophyta
EC6.2.1.8
Description4-coumarate--CoA ligase-like
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10071Gchil10071Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 673857..674729 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10071.t1.stop1Gchil10071.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 673857..673859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10071.t1.CDS1Gchil10071.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 673857..674729 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10071.t1.exon1Gchil10071.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 673857..674729 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10071.t1.start1Gchil10071.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 674727..674729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10071.t1Gchil10071.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 673857..674729 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10071.t1 ID=Gchil10071.t1|Name=Gchil10071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MAVSTAEHVSAPSHVSDVVDVVDVAHETFEDTASTASDLTNELEHHTIDT
DSTVETTPSSSAQAILDRLARLEQSQNQMMNQLKSEHELEMAQLRQKLHH
AQSKRQEAEQKVVAQPLIMAINMTEVEAAVQAASLAEQESASALEEARKV
AEDARLAAGGIPQSIREATREGDVGYGADGEYIIKKVTVNLDDVERAISI
SPLISVCRAFGRPDAKYGNEVYCAVVPKKNVRVSERMLLIHAQKYLATAM
VPKRFFFLQELPSGITRKALAEAQMQGDSTKLSGLAAIEQ*
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spliced messenger RNA

>Gchil10071.t1 ID=Gchil10071.t1|Name=Gchil10071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004442_pilon:673857..674729- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCTCCACGGCGGAGCACGTTTCCGCGCCGTCGCACGTCTCCGA
CGTCGTCGACGTCGTCGACGTTGCTCATGAAACCTTCGAAGATACCGCAA
GTACCGCAAGTGATCTTACCAACGAACTGGAGCACCATACCATCGACACC
GATAGTACCGTTGAAACCACCCCCAGCTCCAGTGCACAGGCAATTTTGGA
TCGTCTTGCGCGTCTGGAGCAGTCGCAAAATCAGATGATGAACCAGCTCA
AGTCCGAACACGAGCTCGAAATGGCCCAGCTTCGTCAGAAGCTGCACCAC
GCCCAATCCAAGCGCCAAGAGGCCGAGCAAAAGGTCGTCGCCCAGCCGCT
CATCATGGCAATTAACATGACCGAGGTGGAGGCCGCCGTGCAGGCCGCGT
CGCTCGCTGAGCAAGAGTCGGCCAGCGCGTTGGAGGAGGCTAGAAAGGTT
GCCGAGGACGCTCGTTTGGCAGCTGGCGGAATCCCACAATCCATCCGCGA
AGCAACCAGAGAAGGTGATGTCGGCTACGGCGCAGATGGCGAGTACATCA
TCAAGAAAGTCACTGTCAATCTTGATGACGTCGAACGCGCCATCAGTATT
TCTCCTCTTATCAGTGTATGTCGTGCTTTTGGGCGGCCAGATGCAAAGTA
TGGAAATGAAGTTTATTGTGCCGTCGTTCCAAAGAAGAATGTTCGTGTTT
CCGAACGTATGCTCTTAATTCACGCTCAAAAGTATCTGGCTACGGCAATG
GTTCCCAAGCGCTTCTTTTTCCTTCAGGAGCTCCCGTCGGGCATCACCAG
AAAAGCGTTGGCTGAAGCGCAGATGCAAGGCGATAGCACCAAACTCTCTG
GGCTCGCTGCTATTGAACAGTAG
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protein sequence of Gchil10071.t1

>Gchil10071.t1 ID=Gchil10071.t1|Name=Gchil10071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MAVSTAEHVSAPSHVSDVVDVVDVAHETFEDTASTASDLTNELEHHTIDT
DSTVETTPSSSAQAILDRLARLEQSQNQMMNQLKSEHELEMAQLRQKLHH
AQSKRQEAEQKVVAQPLIMAINMTEVEAAVQAASLAEQESASALEEARKV
AEDARLAAGGIPQSIREATREGDVGYGADGEYIIKKVTVNLDDVERAISI
SPLISVCRAFGRPDAKYGNEVYCAVVPKKNVRVSERMLLIHAQKYLATAM
VPKRFFFLQELPSGITRKALAEAQMQGDSTKLSGLAAIEQ*
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mRNA from alignment at tig00004442_pilon:673857..674729-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10071.t1 ID=Gchil10071.t1|Name=Gchil10071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004442_pilon:673857..674729- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTCTCCACGGCGGAGCACGTTTCCGCGCCGTCGCACGTCTCCGA
CGTCGTCGACGTCGTCGACGTTGCTCATGAAACCTTCGAAGATACCGCAA
GTACCGCAAGTGATCTTACCAACGAACTGGAGCACCATACCATCGACACC
GATAGTACCGTTGAAACCACCCCCAGCTCCAGTGCACAGGCAATTTTGGA
TCGTCTTGCGCGTCTGGAGCAGTCGCAAAATCAGATGATGAACCAGCTCA
AGTCCGAACACGAGCTCGAAATGGCCCAGCTTCGTCAGAAGCTGCACCAC
GCCCAATCCAAGCGCCAAGAGGCCGAGCAAAAGGTCGTCGCCCAGCCGCT
CATCATGGCAATTAACATGACCGAGGTGGAGGCCGCCGTGCAGGCCGCGT
CGCTCGCTGAGCAAGAGTCGGCCAGCGCGTTGGAGGAGGCTAGAAAGGTT
GCCGAGGACGCTCGTTTGGCAGCTGGCGGAATCCCACAATCCATCCGCGA
AGCAACCAGAGAAGGTGATGTCGGCTACGGCGCAGATGGCGAGTACATCA
TCAAGAAAGTCACTGTCAATCTTGATGACGTCGAACGCGCCATCAGTATT
TCTCCTCTTATCAGTGTATGTCGTGCTTTTGGGCGGCCAGATGCAAAGTA
TGGAAATGAAGTTTATTGTGCCGTCGTTCCAAAGAAGAATGTTCGTGTTT
CCGAACGTATGCTCTTAATTCACGCTCAAAAGTATCTGGCTACGGCAATG
GTTCCCAAGCGCTTCTTTTTCCTTCAGGAGCTCCCGTCGGGCATCACCAG
AAAAGCGTTGGCTGAAGCGCAGATGCAAGGCGATAGCACCAAACTCTCTG
GGCTCGCTGCTATTGAACAGTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:673857..674729-

>Gchil10071.t1 ID=Gchil10071.t1|Name=Gchil10071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00004442_pilon:673857..674729- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGTCTCCACGGCGGAGCACGTTTCCGCGCCGTCGCACGTCTCCGA
CGTCGTCGACGTCGTCGACGTTGCTCATGAAACCTTCGAAGATACCGCAA
GTACCGCAAGTGATCTTACCAACGAACTGGAGCACCATACCATCGACACC
GATAGTACCGTTGAAACCACCCCCAGCTCCAGTGCACAGGCAATTTTGGA
TCGTCTTGCGCGTCTGGAGCAGTCGCAAAATCAGATGATGAACCAGCTCA
AGTCCGAACACGAGCTCGAAATGGCCCAGCTTCGTCAGAAGCTGCACCAC
GCCCAATCCAAGCGCCAAGAGGCCGAGCAAAAGGTCGTCGCCCAGCCGCT
CATCATGGCAATTAACATGACCGAGGTGGAGGCCGCCGTGCAGGCCGCGT
CGCTCGCTGAGCAAGAGTCGGCCAGCGCGTTGGAGGAGGCTAGAAAGGTT
GCCGAGGACGCTCGTTTGGCAGCTGGCGGAATCCCACAATCCATCCGCGA
AGCAACCAGAGAAGGTGATGTCGGCTACGGCGCAGATGGCGAGTACATCA
TCAAGAAAGTCACTGTCAATCTTGATGACGTCGAACGCGCCATCAGTATT
TCTCCTCTTATCAGTGTATGTCGTGCTTTTGGGCGGCCAGATGCAAAGTA
TGGAAATGAAGTTTATTGTGCCGTCGTTCCAAAGAAGAATGTTCGTGTTT
CCGAACGTATGCTCTTAATTCACGCTCAAAAGTATCTGGCTACGGCAATG
GTTCCCAAGCGCTTCTTTTTCCTTCAGGAGCTCCCGTCGGGCATCACCAG
AAAAGCGTTGGCTGAAGCGCAGATGCAAGGCGATAGCACCAAACTCTCTG
GGCTCGCTGCTATTGAACAGTAG
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