Gchil10070.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10070.t1
Unique Name	Gchil10070.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	321

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:672235..673197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	983917.RGE_37240
Preferred name	menB
PFAMs	ECH_1
Max annot lvl	28216\|Betaproteobacteria
KEGG rclass	RC01429,RC01923
KEGG ko	ko:K01661,ko:K07536
KEGG Reaction	R05592,R07263
KEGG Pathway	ko00130,ko00362,ko01100,ko01110,ko01120,ko01220,map00130,map00362,map01100,map01110,map01120,map01220
KEGG Module	M00116,M00540
Evalue	2.2e-128
EggNOG OGs	COG0447@1\|root,COG0447@2\|Bacteria,1QTZ2@1224\|Proteobacteria,2VJ36@28216\|Betaproteobacteria,1KKKJ@119065\|unclassified Burkholderiales
EC	4.1.3.36
Description	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10070	Gchil10070	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 672235..673197 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10070.t1.start1	Gchil10070.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 672235..672237 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10070.t1.CDS1	Gchil10070.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 672235..673197 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10070.t1.exon1	Gchil10070.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 672235..673197 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10070.t1.stop1	Gchil10070.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 673195..673197 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10070.t1	Gchil10070.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 672235..673197 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:672235..673197+
coding sequence from alignment at tig00004442_pilon:672235..673197+

mRNA sequence

>Gchil10070.t1 ID=Gchil10070.t1|Name=Gchil10070.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp
MPSTRHVQVEPSAILKQSTPYIRPGCQWQTVQIDSFPQFQDIRFEKSSDG
IAKITISRPAVHNAFRPLTLLEMEHAFRYVRDTPAIRAVILTGEGHRAFC
SGGDQSARGHGGYVGSDGIPRLAVLDLHIMMRRLPKVVIAMVAGYAIGGG
HILHMICDLTIAAENACFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIW
FLCRQYNANEALQMGLVNAVVSLKDLEIESVKWCREILEKSPTAISCLKA
ALNADGDGHAGLSQLAGEATRLFYQSDEGKEGKNAFLEKRKPRFFEKFPD
EEEPKSGECLKETEKRRARL*

spliced messenger RNA

>Gchil10070.t1 ID=Gchil10070.t1|Name=Gchil10070.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004442_pilon:672235..673197+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCACACGACATGTGCAAGTCGAACCATCTGCAATTCTGAAGCA
ATCAACCCCTTATATTCGACCAGGTTGTCAATGGCAAACCGTACAAATCG
ATTCATTCCCCCAATTCCAAGACATACGATTTGAAAAGTCCAGTGATGGC
ATCGCGAAAATAACAATTTCACGACCCGCAGTACATAATGCCTTCCGCCC
GCTCACATTGCTCGAGATGGAGCACGCCTTCCGATATGTTAGAGACACGC
CTGCAATTCGTGCGGTGATACTTACAGGTGAGGGACATCGTGCATTCTGT
TCCGGTGGGGATCAGTCTGCCCGAGGCCATGGGGGATATGTAGGGTCCGA
CGGTATTCCTCGCTTAGCTGTGCTTGACCTACATATTATGATGCGTCGTC
TACCAAAAGTAGTGATTGCTATGGTGGCTGGGTATGCAATAGGCGGCGGA
CATATTCTGCACATGATATGTGACTTGACAATAGCGGCTGAGAACGCCTG
TTTCGGACAGACCGGACCAAAAGTCGGGAGTTTCGACGGTGGGTACGGCA
GTTCGTACATGGCACGCATCGTCGGCCAAAAGAAAGCTCGCGAGATATGG
TTTTTGTGTCGACAGTACAATGCAAACGAAGCGTTACAGATGGGGTTGGT
CAACGCTGTTGTTTCATTAAAAGACTTGGAGATAGAATCGGTCAAGTGGT
GTCGGGAGATTTTGGAAAAGAGTCCAACAGCAATTTCATGTTTAAAGGCA
GCTTTGAATGCTGACGGGGACGGACATGCTGGATTGAGCCAGCTCGCAGG
TGAAGCAACTCGTCTTTTTTATCAAAGCGATGAGGGTAAGGAGGGAAAGA
ATGCCTTTTTGGAGAAGCGTAAGCCCCGTTTTTTTGAAAAGTTCCCCGAT
GAAGAAGAGCCCAAAAGTGGAGAATGTTTGAAGGAAACTGAAAAACGCCG
CGCACGTCTGTGA

protein sequence of Gchil10070.t1

>Gchil10070.t1 ID=Gchil10070.t1|Name=Gchil10070.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=321bp
MPSTRHVQVEPSAILKQSTPYIRPGCQWQTVQIDSFPQFQDIRFEKSSDG
IAKITISRPAVHNAFRPLTLLEMEHAFRYVRDTPAIRAVILTGEGHRAFC
SGGDQSARGHGGYVGSDGIPRLAVLDLHIMMRRLPKVVIAMVAGYAIGGG
HILHMICDLTIAAENACFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIW
FLCRQYNANEALQMGLVNAVVSLKDLEIESVKWCREILEKSPTAISCLKA
ALNADGDGHAGLSQLAGEATRLFYQSDEGKEGKNAFLEKRKPRFFEKFPD
EEEPKSGECLKETEKRRARL*

mRNA from alignment at tig00004442_pilon:672235..673197+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10070.t1 ID=Gchil10070.t1|Name=Gchil10070.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00004442_pilon:672235..673197+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCACACGACATGTGCAAGTCGAACCATCTGCAATTCTGAAGCA
ATCAACCCCTTATATTCGACCAGGTTGTCAATGGCAAACCGTACAAATCG
ATTCATTCCCCCAATTCCAAGACATACGATTTGAAAAGTCCAGTGATGGC
ATCGCGAAAATAACAATTTCACGACCCGCAGTACATAATGCCTTCCGCCC
GCTCACATTGCTCGAGATGGAGCACGCCTTCCGATATGTTAGAGACACGC
CTGCAATTCGTGCGGTGATACTTACAGGTGAGGGACATCGTGCATTCTGT
TCCGGTGGGGATCAGTCTGCCCGAGGCCATGGGGGATATGTAGGGTCCGA
CGGTATTCCTCGCTTAGCTGTGCTTGACCTACATATTATGATGCGTCGTC
TACCAAAAGTAGTGATTGCTATGGTGGCTGGGTATGCAATAGGCGGCGGA
CATATTCTGCACATGATATGTGACTTGACAATAGCGGCTGAGAACGCCTG
TTTCGGACAGACCGGACCAAAAGTCGGGAGTTTCGACGGTGGGTACGGCA
GTTCGTACATGGCACGCATCGTCGGCCAAAAGAAAGCTCGCGAGATATGG
TTTTTGTGTCGACAGTACAATGCAAACGAAGCGTTACAGATGGGGTTGGT
CAACGCTGTTGTTTCATTAAAAGACTTGGAGATAGAATCGGTCAAGTGGT
GTCGGGAGATTTTGGAAAAGAGTCCAACAGCAATTTCATGTTTAAAGGCA
GCTTTGAATGCTGACGGGGACGGACATGCTGGATTGAGCCAGCTCGCAGG
TGAAGCAACTCGTCTTTTTTATCAAAGCGATGAGGGTAAGGAGGGAAAGA
ATGCCTTTTTGGAGAAGCGTAAGCCCCGTTTTTTTGAAAAGTTCCCCGAT
GAAGAAGAGCCCAAAAGTGGAGAATGTTTGAAGGAAACTGAAAAACGCCG
CGCACGTCTGTGA

Coding sequence (CDS) from alignment at tig00004442_pilon:672235..673197+

>Gchil10070.t1 ID=Gchil10070.t1|Name=Gchil10070.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00004442_pilon:672235..673197+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCACACGACATGTGCAAGTCGAACCATCTGCAATTCTGAAGCA
ATCAACCCCTTATATTCGACCAGGTTGTCAATGGCAAACCGTACAAATCG
ATTCATTCCCCCAATTCCAAGACATACGATTTGAAAAGTCCAGTGATGGC
ATCGCGAAAATAACAATTTCACGACCCGCAGTACATAATGCCTTCCGCCC
GCTCACATTGCTCGAGATGGAGCACGCCTTCCGATATGTTAGAGACACGC
CTGCAATTCGTGCGGTGATACTTACAGGTGAGGGACATCGTGCATTCTGT
TCCGGTGGGGATCAGTCTGCCCGAGGCCATGGGGGATATGTAGGGTCCGA
CGGTATTCCTCGCTTAGCTGTGCTTGACCTACATATTATGATGCGTCGTC
TACCAAAAGTAGTGATTGCTATGGTGGCTGGGTATGCAATAGGCGGCGGA
CATATTCTGCACATGATATGTGACTTGACAATAGCGGCTGAGAACGCCTG
TTTCGGACAGACCGGACCAAAAGTCGGGAGTTTCGACGGTGGGTACGGCA
GTTCGTACATGGCACGCATCGTCGGCCAAAAGAAAGCTCGCGAGATATGG
TTTTTGTGTCGACAGTACAATGCAAACGAAGCGTTACAGATGGGGTTGGT
CAACGCTGTTGTTTCATTAAAAGACTTGGAGATAGAATCGGTCAAGTGGT
GTCGGGAGATTTTGGAAAAGAGTCCAACAGCAATTTCATGTTTAAAGGCA
GCTTTGAATGCTGACGGGGACGGACATGCTGGATTGAGCCAGCTCGCAGG
TGAAGCAACTCGTCTTTTTTATCAAAGCGATGAGGGTAAGGAGGGAAAGA
ATGCCTTTTTGGAGAAGCGTAAGCCCCGTTTTTTTGAAAAGTTCCCCGAT
GAAGAAGAGCCCAAAAGTGGAGAATGTTTGAAGGAAACTGAAAAACGCCG
CGCACGTCTGTGA