Gchil10068.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10068.t1
Unique NameGchil10068.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:666184..667107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002500466.1
PFAMsLCM
Max annot lvl3041|Chlorophyta
Evalue2.26e-28
EggNOG OGsCOG3315@1|root,2QRNU@2759|Eukaryota,37Q2S@33090|Viridiplantae,34IMY@3041|Chlorophyta
DescriptionPf02409 Omt_N O-methyltransferase N-terminus This domain is found at the N-terminus of polyketide synthesis O-methyltransferase proteins
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10068Gchil10068Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 666184..667107 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10068.t1.stop1Gchil10068.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 666184..666186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10068.t1.CDS1Gchil10068.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 666184..667107 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10068.t1.exon1Gchil10068.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 666184..667107 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10068.t1.start1Gchil10068.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 667105..667107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10068.t1Gchil10068.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 666184..667107 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10068.t1 ID=Gchil10068.t1|Name=Gchil10068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=308bp
MNGQEGLLLPVSAGRCHSLLITGIIRLTGPLIANWCRLLPFKNVARWFGE
GQIIVSAEQCASLRALETEHPCPLFRDIYAESLAGESAMTRARERNPSAR
IAIRTRYFDDFVQKNLNNLGPTQLVSLGAGMDMRPYRLECVTPLVSCYEI
DIEEVIDLKKRRIAKIQPAPRLRAASINRIGTSLCSNTWVEKLLQAGFDK
EEVRTIWIMEGIVYYFTDDQVKELFGRIHALSAPGSVCCASVLKRPPRNR
RGPAFRSCIPDPESFLQEIGFIPIAADFCGGPEANYGRWEGEQTGGTYYM
SGLRAMM*
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spliced messenger RNA

>Gchil10068.t1 ID=Gchil10068.t1|Name=Gchil10068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00004442_pilon:666184..667107- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGCCAAGAAGGGTTATTGCTACCCGTTAGTGCTGGTAGGTGCCA
CAGTCTCTTAATAACGGGAATCATACGTCTCACTGGTCCCCTTATTGCGA
ACTGGTGTCGCTTATTGCCATTTAAGAATGTGGCAAGATGGTTCGGCGAA
GGGCAAATTATTGTTTCAGCCGAACAATGCGCATCACTAAGAGCTTTGGA
AACGGAACATCCGTGTCCTCTCTTTCGGGATATATATGCAGAATCTCTAG
CAGGGGAAAGCGCCATGACACGTGCTCGTGAAAGAAACCCCAGCGCTAGA
ATTGCTATTCGGACAAGGTATTTCGACGACTTTGTGCAAAAGAATCTCAA
TAACCTTGGCCCGACTCAGCTCGTATCTCTTGGAGCAGGTATGGACATGC
GACCTTACCGCCTAGAATGCGTAACACCGTTAGTATCGTGTTATGAAATT
GATATCGAAGAGGTCATCGATCTAAAGAAGAGACGGATCGCAAAAATACA
GCCAGCCCCTCGTTTACGAGCTGCCTCGATAAATAGGATCGGAACCAGCC
TATGCTCTAATACCTGGGTCGAAAAACTGCTTCAGGCTGGATTTGACAAG
GAAGAAGTACGAACCATTTGGATAATGGAGGGGATTGTCTACTACTTCAC
AGATGACCAGGTCAAGGAATTATTTGGCAGAATACATGCGCTCAGTGCGC
CAGGGAGTGTATGTTGTGCTTCTGTGCTAAAACGACCGCCAAGAAACAGA
AGGGGACCTGCTTTCCGCAGTTGTATCCCAGATCCCGAGAGTTTTCTTCA
GGAGATTGGGTTTATTCCTATAGCGGCAGATTTTTGTGGCGGTCCAGAGG
CAAACTATGGGCGATGGGAAGGTGAACAGACTGGAGGGACTTACTACATG
TCCGGTTTGAGAGCAATGATGTGA
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protein sequence of Gchil10068.t1

>Gchil10068.t1 ID=Gchil10068.t1|Name=Gchil10068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=308bp
MNGQEGLLLPVSAGRCHSLLITGIIRLTGPLIANWCRLLPFKNVARWFGE
GQIIVSAEQCASLRALETEHPCPLFRDIYAESLAGESAMTRARERNPSAR
IAIRTRYFDDFVQKNLNNLGPTQLVSLGAGMDMRPYRLECVTPLVSCYEI
DIEEVIDLKKRRIAKIQPAPRLRAASINRIGTSLCSNTWVEKLLQAGFDK
EEVRTIWIMEGIVYYFTDDQVKELFGRIHALSAPGSVCCASVLKRPPRNR
RGPAFRSCIPDPESFLQEIGFIPIAADFCGGPEANYGRWEGEQTGGTYYM
SGLRAMM*
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mRNA from alignment at tig00004442_pilon:666184..667107-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10068.t1 ID=Gchil10068.t1|Name=Gchil10068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=924bp|location=Sequence derived from alignment at tig00004442_pilon:666184..667107- (Gracilaria chilensis NLEC103_M9 male)
ATGAATGGCCAAGAAGGGTTATTGCTACCCGTTAGTGCTGGTAGGTGCCA
CAGTCTCTTAATAACGGGAATCATACGTCTCACTGGTCCCCTTATTGCGA
ACTGGTGTCGCTTATTGCCATTTAAGAATGTGGCAAGATGGTTCGGCGAA
GGGCAAATTATTGTTTCAGCCGAACAATGCGCATCACTAAGAGCTTTGGA
AACGGAACATCCGTGTCCTCTCTTTCGGGATATATATGCAGAATCTCTAG
CAGGGGAAAGCGCCATGACACGTGCTCGTGAAAGAAACCCCAGCGCTAGA
ATTGCTATTCGGACAAGGTATTTCGACGACTTTGTGCAAAAGAATCTCAA
TAACCTTGGCCCGACTCAGCTCGTATCTCTTGGAGCAGGTATGGACATGC
GACCTTACCGCCTAGAATGCGTAACACCGTTAGTATCGTGTTATGAAATT
GATATCGAAGAGGTCATCGATCTAAAGAAGAGACGGATCGCAAAAATACA
GCCAGCCCCTCGTTTACGAGCTGCCTCGATAAATAGGATCGGAACCAGCC
TATGCTCTAATACCTGGGTCGAAAAACTGCTTCAGGCTGGATTTGACAAG
GAAGAAGTACGAACCATTTGGATAATGGAGGGGATTGTCTACTACTTCAC
AGATGACCAGGTCAAGGAATTATTTGGCAGAATACATGCGCTCAGTGCGC
CAGGGAGTGTATGTTGTGCTTCTGTGCTAAAACGACCGCCAAGAAACAGA
AGGGGACCTGCTTTCCGCAGTTGTATCCCAGATCCCGAGAGTTTTCTTCA
GGAGATTGGGTTTATTCCTATAGCGGCAGATTTTTGTGGCGGTCCAGAGG
CAAACTATGGGCGATGGGAAGGTGAACAGACTGGAGGGACTTACTACATG
TCCGGTTTGAGAGCAATGATGTGA
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Coding sequence (CDS) from alignment at tig00004442_pilon:666184..667107-

>Gchil10068.t1 ID=Gchil10068.t1|Name=Gchil10068.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=924bp|location=Sequence derived from alignment at tig00004442_pilon:666184..667107- (Gracilaria chilensis NLEC103_M9 male)
ATGAATGGCCAAGAAGGGTTATTGCTACCCGTTAGTGCTGGTAGGTGCCA
CAGTCTCTTAATAACGGGAATCATACGTCTCACTGGTCCCCTTATTGCGA
ACTGGTGTCGCTTATTGCCATTTAAGAATGTGGCAAGATGGTTCGGCGAA
GGGCAAATTATTGTTTCAGCCGAACAATGCGCATCACTAAGAGCTTTGGA
AACGGAACATCCGTGTCCTCTCTTTCGGGATATATATGCAGAATCTCTAG
CAGGGGAAAGCGCCATGACACGTGCTCGTGAAAGAAACCCCAGCGCTAGA
ATTGCTATTCGGACAAGGTATTTCGACGACTTTGTGCAAAAGAATCTCAA
TAACCTTGGCCCGACTCAGCTCGTATCTCTTGGAGCAGGTATGGACATGC
GACCTTACCGCCTAGAATGCGTAACACCGTTAGTATCGTGTTATGAAATT
GATATCGAAGAGGTCATCGATCTAAAGAAGAGACGGATCGCAAAAATACA
GCCAGCCCCTCGTTTACGAGCTGCCTCGATAAATAGGATCGGAACCAGCC
TATGCTCTAATACCTGGGTCGAAAAACTGCTTCAGGCTGGATTTGACAAG
GAAGAAGTACGAACCATTTGGATAATGGAGGGGATTGTCTACTACTTCAC
AGATGACCAGGTCAAGGAATTATTTGGCAGAATACATGCGCTCAGTGCGC
CAGGGAGTGTATGTTGTGCTTCTGTGCTAAAACGACCGCCAAGAAACAGA
AGGGGACCTGCTTTCCGCAGTTGTATCCCAGATCCCGAGAGTTTTCTTCA
GGAGATTGGGTTTATTCCTATAGCGGCAGATTTTTGTGGCGGTCCAGAGG
CAAACTATGGGCGATGGGAAGGTGAACAGACTGGAGGGACTTACTACATG
TCCGGTTTGAGAGCAATGATGTGA
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