Gchil10067.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10067.t1
Unique NameGchil10067.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length745
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:663717..666046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog318161.Sden_2868
PFAMsInhibitor_I9,PPC,Peptidase_S8
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K14645
KEGG Pathwayko02024,map02024
Evalue2.1e-64
EggNOG OGsCOG1404@1|root,COG3227@1|root,COG1404@2|Bacteria,COG3227@2|Bacteria,1MU3S@1224|Proteobacteria,1RNB8@1236|Gammaproteobacteria,2QAS3@267890|Shewanellaceae
DescriptionPeptidase inhibitor I9
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10067Gchil10067Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 663506..666046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10067.t1Gchil10067.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 663717..666046 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10067.t1.start1Gchil10067.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 663717..663719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10067.t1.CDS1Gchil10067.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 663717..663832 +
Gchil10067.t1.CDS2Gchil10067.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 663928..666046 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10067.t1.exon1Gchil10067.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 663717..663832 +
Gchil10067.t1.exon2Gchil10067.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 663928..666046 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10067.t1.intron1Gchil10067.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 663833..663927 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10067.t1.stop1Gchil10067.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 666044..666046 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10067.t1 ID=Gchil10067.t1|Name=Gchil10067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=745bp
MISGILYWYRLVLKNITWIPFCWPLKKTRSSRKSRVSSKGGEGPFELKVQ
EVEHSHLGSIPWGLDRIDQRGLPLDGKFSVLKGGYNVFVYILDSGIRTSH
SEFLAENGPSRVIQGVDLVDRKNVFSDETGHGTHVAAIVGGRSFGVAKNA
TLVSVRVIDRNGRGYTSRLIEGLQWTMDDIRTNNRTPALVVMSLSTKYSA
TLNDVVEKTSESGIAVITAAGNSGNDSCLFSPASSKFSISVGATNKEDKR
PEYSNYGQCLDIYAPGESIASAWHTGDKAEKTLSGTSAACPHVAGTVAIL
LAENPTMTPTEIQSVLYSTATFSVVGNLSTADKANATNNQWGFTKSNRLI
YVRAIPSLTTDGDPEEGTMFLYVIYALASSTFLKDTCDFSQGKWSSISKL
FESHGLASSISTTVTIKTCCPSVSGRREGCAAEKPWNVTRMIVRLHTGDI
LAGAVFDFLSDFTRSQDKMLMLETLLESKVSLLVEPWVVDARGLKYWTAP
TIMQPMQTKLPTSVIISISVAVSVSVFLGLMALAYLYYRRKEAEEIAEQK
AFQSMAVEFELMDGKQSNLANIETGVGIEYQKEGIKRTNTEINENMLRYA
NPDLALPTPREQTAFSPIEAQSVRSTRKQRSALSSFFKEWGQQGLNTNRD
RGTGSFSLRRLSFGPTRLPSFITKLSTPRNTRSNIQTPAARGSTRDTKNN
TTPTLEYSSLDNALSQGGVENKSKTSDASELPQKEEVLRKDGGQ*
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spliced messenger RNA

>Gchil10067.t1 ID=Gchil10067.t1|Name=Gchil10067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2235bp|location=Sequence derived from alignment at tig00004442_pilon:663717..666046+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAGCGGAATTCTATATTGGTATCGACTTGTTCTGAAAAATATCAC
CTGGATACCATTTTGTTGGCCTTTAAAGAAGACCCGCTCGTCGCGGAAAA
GTCGAGTGAGCTCGAAAGGTGGAGAAGGGCCATTTGAATTGAAAGTCCAG
GAAGTGGAGCACTCTCATCTCGGTTCAATTCCATGGGGGTTGGATCGAAT
AGACCAACGAGGTCTTCCCTTGGATGGAAAGTTTTCGGTGCTTAAGGGTG
GATACAACGTTTTTGTTTACATTCTCGACTCAGGTATACGAACGTCGCAC
AGTGAGTTCCTGGCTGAAAATGGACCTTCACGGGTTATCCAAGGAGTAGA
CCTCGTCGATCGGAAGAATGTATTTTCCGATGAAACTGGCCACGGTACTC
ATGTTGCCGCGATCGTTGGCGGTCGATCATTCGGTGTGGCTAAGAATGCC
ACACTAGTATCTGTTCGCGTAATTGATCGAAATGGACGTGGATACACGAG
CCGTCTTATCGAGGGGCTTCAGTGGACAATGGATGACATTCGGACTAACA
ATCGGACTCCTGCTCTGGTCGTGATGTCACTAAGTACGAAGTATTCAGCA
ACTCTGAATGACGTGGTTGAGAAGACCAGCGAATCAGGTATTGCGGTAAT
TACGGCCGCTGGTAACTCAGGAAATGATAGTTGCTTATTTTCACCAGCTT
CTAGCAAGTTTTCTATATCTGTTGGTGCAACAAACAAGGAGGATAAGCGG
CCTGAATATTCGAACTATGGTCAGTGCCTTGACATCTATGCACCTGGAGA
GTCGATTGCTTCTGCATGGCACACAGGTGACAAAGCAGAAAAGACTCTCT
CAGGGACTTCAGCGGCATGTCCGCATGTTGCAGGAACCGTCGCAATCCTG
CTTGCAGAGAATCCAACAATGACTCCAACTGAAATACAATCAGTATTGTA
CTCTACAGCTACGTTTTCTGTTGTGGGAAATCTTAGTACTGCAGATAAAG
CGAACGCCACGAATAATCAGTGGGGTTTCACAAAAAGCAATAGATTGATA
TATGTGAGAGCTATTCCCTCTCTAACAACAGATGGAGATCCAGAAGAAGG
AACAATGTTCTTATACGTCATCTATGCATTAGCCTCCTCGACGTTTCTTA
AGGATACTTGCGATTTTTCTCAAGGCAAGTGGTCTTCTATATCTAAACTT
TTCGAGTCTCATGGACTAGCATCGTCAATTAGTACAACGGTAACCATCAA
AACATGCTGTCCGTCAGTTTCTGGTCGTCGCGAAGGTTGTGCAGCCGAAA
AGCCTTGGAATGTGACACGGATGATTGTTCGTCTGCACACGGGGGATATC
CTTGCCGGTGCCGTGTTTGACTTCCTTTCTGATTTTACCAGATCTCAAGA
CAAAATGCTGATGTTGGAGACGTTGCTGGAATCCAAGGTCTCATTGCTCG
TGGAACCATGGGTTGTAGATGCGAGGGGTCTGAAATATTGGACGGCTCCA
ACGATAATGCAACCCATGCAGACCAAGCTCCCAACCTCAGTTATCATCTC
AATTTCGGTAGCTGTAAGTGTGTCAGTTTTTTTGGGTTTGATGGCCCTTG
CGTATTTGTACTACAGGAGAAAGGAAGCCGAAGAGATTGCAGAGCAAAAA
GCGTTTCAGAGCATGGCGGTGGAATTTGAATTAATGGACGGAAAGCAGAG
CAATTTAGCAAATATTGAAACCGGAGTTGGTATCGAGTACCAGAAAGAAG
GTATAAAACGAACAAACACTGAGATCAATGAAAACATGCTCAGATACGCA
AACCCAGATTTGGCGCTACCAACTCCAAGAGAACAAACCGCTTTCTCACC
GATAGAGGCTCAAAGCGTACGGTCAACTCGGAAACAAAGAAGTGCTCTAT
CCAGCTTTTTTAAAGAATGGGGCCAGCAGGGCCTGAACACAAACAGAGAT
AGAGGGACGGGTTCCTTTTCGTTGCGACGCCTATCCTTTGGTCCGACAAG
GCTCCCGTCGTTTATTACGAAGCTATCCACACCTCGAAATACAAGGTCAA
ACATACAAACTCCAGCAGCGAGAGGAAGCACAAGAGACACCAAGAATAAT
ACAACGCCAACTCTGGAATACTCTAGCTTGGATAACGCCCTAAGTCAGGG
TGGAGTTGAAAACAAATCAAAAACTAGCGACGCATCAGAACTTCCGCAAA
AAGAAGAGGTCTTGCGAAAGGATGGAGGGCAGTAA
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protein sequence of Gchil10067.t1

>Gchil10067.t1 ID=Gchil10067.t1|Name=Gchil10067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=745bp
MISGILYWYRLVLKNITWIPFCWPLKKTRSSRKSRVSSKGGEGPFELKVQ
EVEHSHLGSIPWGLDRIDQRGLPLDGKFSVLKGGYNVFVYILDSGIRTSH
SEFLAENGPSRVIQGVDLVDRKNVFSDETGHGTHVAAIVGGRSFGVAKNA
TLVSVRVIDRNGRGYTSRLIEGLQWTMDDIRTNNRTPALVVMSLSTKYSA
TLNDVVEKTSESGIAVITAAGNSGNDSCLFSPASSKFSISVGATNKEDKR
PEYSNYGQCLDIYAPGESIASAWHTGDKAEKTLSGTSAACPHVAGTVAIL
LAENPTMTPTEIQSVLYSTATFSVVGNLSTADKANATNNQWGFTKSNRLI
YVRAIPSLTTDGDPEEGTMFLYVIYALASSTFLKDTCDFSQGKWSSISKL
FESHGLASSISTTVTIKTCCPSVSGRREGCAAEKPWNVTRMIVRLHTGDI
LAGAVFDFLSDFTRSQDKMLMLETLLESKVSLLVEPWVVDARGLKYWTAP
TIMQPMQTKLPTSVIISISVAVSVSVFLGLMALAYLYYRRKEAEEIAEQK
AFQSMAVEFELMDGKQSNLANIETGVGIEYQKEGIKRTNTEINENMLRYA
NPDLALPTPREQTAFSPIEAQSVRSTRKQRSALSSFFKEWGQQGLNTNRD
RGTGSFSLRRLSFGPTRLPSFITKLSTPRNTRSNIQTPAARGSTRDTKNN
TTPTLEYSSLDNALSQGGVENKSKTSDASELPQKEEVLRKDGGQ*
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mRNA from alignment at tig00004442_pilon:663717..666046+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10067.t1 ID=Gchil10067.t1|Name=Gchil10067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2330bp|location=Sequence derived from alignment at tig00004442_pilon:663717..666046+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAAGCGGAATTCTATATTGGTATCGACTTGTTCTGAAAAATATCAC
CTGGATACCATTTTGTTGGCCTTTAAAGAAGACCCGCTCGTCGCGGAAAA
GTCGAGTGAGCTCGAAGTAATAGATGTGAATGATAATGACTGTGGACTTC
AGTCCACTCTAGAACTTTTCATCTCTTCTCTTCCCGTCTATATTCTTTTG
ACTGGTTACAGAGGTGGAGAAGGGCCATTTGAATTGAAAGTCCAGGAAGT
GGAGCACTCTCATCTCGGTTCAATTCCATGGGGGTTGGATCGAATAGACC
AACGAGGTCTTCCCTTGGATGGAAAGTTTTCGGTGCTTAAGGGTGGATAC
AACGTTTTTGTTTACATTCTCGACTCAGGTATACGAACGTCGCACAGTGA
GTTCCTGGCTGAAAATGGACCTTCACGGGTTATCCAAGGAGTAGACCTCG
TCGATCGGAAGAATGTATTTTCCGATGAAACTGGCCACGGTACTCATGTT
GCCGCGATCGTTGGCGGTCGATCATTCGGTGTGGCTAAGAATGCCACACT
AGTATCTGTTCGCGTAATTGATCGAAATGGACGTGGATACACGAGCCGTC
TTATCGAGGGGCTTCAGTGGACAATGGATGACATTCGGACTAACAATCGG
ACTCCTGCTCTGGTCGTGATGTCACTAAGTACGAAGTATTCAGCAACTCT
GAATGACGTGGTTGAGAAGACCAGCGAATCAGGTATTGCGGTAATTACGG
CCGCTGGTAACTCAGGAAATGATAGTTGCTTATTTTCACCAGCTTCTAGC
AAGTTTTCTATATCTGTTGGTGCAACAAACAAGGAGGATAAGCGGCCTGA
ATATTCGAACTATGGTCAGTGCCTTGACATCTATGCACCTGGAGAGTCGA
TTGCTTCTGCATGGCACACAGGTGACAAAGCAGAAAAGACTCTCTCAGGG
ACTTCAGCGGCATGTCCGCATGTTGCAGGAACCGTCGCAATCCTGCTTGC
AGAGAATCCAACAATGACTCCAACTGAAATACAATCAGTATTGTACTCTA
CAGCTACGTTTTCTGTTGTGGGAAATCTTAGTACTGCAGATAAAGCGAAC
GCCACGAATAATCAGTGGGGTTTCACAAAAAGCAATAGATTGATATATGT
GAGAGCTATTCCCTCTCTAACAACAGATGGAGATCCAGAAGAAGGAACAA
TGTTCTTATACGTCATCTATGCATTAGCCTCCTCGACGTTTCTTAAGGAT
ACTTGCGATTTTTCTCAAGGCAAGTGGTCTTCTATATCTAAACTTTTCGA
GTCTCATGGACTAGCATCGTCAATTAGTACAACGGTAACCATCAAAACAT
GCTGTCCGTCAGTTTCTGGTCGTCGCGAAGGTTGTGCAGCCGAAAAGCCT
TGGAATGTGACACGGATGATTGTTCGTCTGCACACGGGGGATATCCTTGC
CGGTGCCGTGTTTGACTTCCTTTCTGATTTTACCAGATCTCAAGACAAAA
TGCTGATGTTGGAGACGTTGCTGGAATCCAAGGTCTCATTGCTCGTGGAA
CCATGGGTTGTAGATGCGAGGGGTCTGAAATATTGGACGGCTCCAACGAT
AATGCAACCCATGCAGACCAAGCTCCCAACCTCAGTTATCATCTCAATTT
CGGTAGCTGTAAGTGTGTCAGTTTTTTTGGGTTTGATGGCCCTTGCGTAT
TTGTACTACAGGAGAAAGGAAGCCGAAGAGATTGCAGAGCAAAAAGCGTT
TCAGAGCATGGCGGTGGAATTTGAATTAATGGACGGAAAGCAGAGCAATT
TAGCAAATATTGAAACCGGAGTTGGTATCGAGTACCAGAAAGAAGGTATA
AAACGAACAAACACTGAGATCAATGAAAACATGCTCAGATACGCAAACCC
AGATTTGGCGCTACCAACTCCAAGAGAACAAACCGCTTTCTCACCGATAG
AGGCTCAAAGCGTACGGTCAACTCGGAAACAAAGAAGTGCTCTATCCAGC
TTTTTTAAAGAATGGGGCCAGCAGGGCCTGAACACAAACAGAGATAGAGG
GACGGGTTCCTTTTCGTTGCGACGCCTATCCTTTGGTCCGACAAGGCTCC
CGTCGTTTATTACGAAGCTATCCACACCTCGAAATACAAGGTCAAACATA
CAAACTCCAGCAGCGAGAGGAAGCACAAGAGACACCAAGAATAATACAAC
GCCAACTCTGGAATACTCTAGCTTGGATAACGCCCTAAGTCAGGGTGGAG
TTGAAAACAAATCAAAAACTAGCGACGCATCAGAACTTCCGCAAAAAGAA
GAGGTCTTGCGAAAGGATGGAGGGCAGTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:663717..666046+

>Gchil10067.t1 ID=Gchil10067.t1|Name=Gchil10067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2235bp|location=Sequence derived from alignment at tig00004442_pilon:663717..666046+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAAGCGGAATTCTATATTGGTATCGACTTGTTCTGAAAAATATCAC
CTGGATACCATTTTGTTGGCCTTTAAAGAAGACCCGCTCGTCGCGGAAAA
GTCGAGTGAGCTCGAAAGGTGGAGAAGGGCCATTTGAATTGAAAGTCCAG
GAAGTGGAGCACTCTCATCTCGGTTCAATTCCATGGGGGTTGGATCGAAT
AGACCAACGAGGTCTTCCCTTGGATGGAAAGTTTTCGGTGCTTAAGGGTG
GATACAACGTTTTTGTTTACATTCTCGACTCAGGTATACGAACGTCGCAC
AGTGAGTTCCTGGCTGAAAATGGACCTTCACGGGTTATCCAAGGAGTAGA
CCTCGTCGATCGGAAGAATGTATTTTCCGATGAAACTGGCCACGGTACTC
ATGTTGCCGCGATCGTTGGCGGTCGATCATTCGGTGTGGCTAAGAATGCC
ACACTAGTATCTGTTCGCGTAATTGATCGAAATGGACGTGGATACACGAG
CCGTCTTATCGAGGGGCTTCAGTGGACAATGGATGACATTCGGACTAACA
ATCGGACTCCTGCTCTGGTCGTGATGTCACTAAGTACGAAGTATTCAGCA
ACTCTGAATGACGTGGTTGAGAAGACCAGCGAATCAGGTATTGCGGTAAT
TACGGCCGCTGGTAACTCAGGAAATGATAGTTGCTTATTTTCACCAGCTT
CTAGCAAGTTTTCTATATCTGTTGGTGCAACAAACAAGGAGGATAAGCGG
CCTGAATATTCGAACTATGGTCAGTGCCTTGACATCTATGCACCTGGAGA
GTCGATTGCTTCTGCATGGCACACAGGTGACAAAGCAGAAAAGACTCTCT
CAGGGACTTCAGCGGCATGTCCGCATGTTGCAGGAACCGTCGCAATCCTG
CTTGCAGAGAATCCAACAATGACTCCAACTGAAATACAATCAGTATTGTA
CTCTACAGCTACGTTTTCTGTTGTGGGAAATCTTAGTACTGCAGATAAAG
CGAACGCCACGAATAATCAGTGGGGTTTCACAAAAAGCAATAGATTGATA
TATGTGAGAGCTATTCCCTCTCTAACAACAGATGGAGATCCAGAAGAAGG
AACAATGTTCTTATACGTCATCTATGCATTAGCCTCCTCGACGTTTCTTA
AGGATACTTGCGATTTTTCTCAAGGCAAGTGGTCTTCTATATCTAAACTT
TTCGAGTCTCATGGACTAGCATCGTCAATTAGTACAACGGTAACCATCAA
AACATGCTGTCCGTCAGTTTCTGGTCGTCGCGAAGGTTGTGCAGCCGAAA
AGCCTTGGAATGTGACACGGATGATTGTTCGTCTGCACACGGGGGATATC
CTTGCCGGTGCCGTGTTTGACTTCCTTTCTGATTTTACCAGATCTCAAGA
CAAAATGCTGATGTTGGAGACGTTGCTGGAATCCAAGGTCTCATTGCTCG
TGGAACCATGGGTTGTAGATGCGAGGGGTCTGAAATATTGGACGGCTCCA
ACGATAATGCAACCCATGCAGACCAAGCTCCCAACCTCAGTTATCATCTC
AATTTCGGTAGCTGTAAGTGTGTCAGTTTTTTTGGGTTTGATGGCCCTTG
CGTATTTGTACTACAGGAGAAAGGAAGCCGAAGAGATTGCAGAGCAAAAA
GCGTTTCAGAGCATGGCGGTGGAATTTGAATTAATGGACGGAAAGCAGAG
CAATTTAGCAAATATTGAAACCGGAGTTGGTATCGAGTACCAGAAAGAAG
GTATAAAACGAACAAACACTGAGATCAATGAAAACATGCTCAGATACGCA
AACCCAGATTTGGCGCTACCAACTCCAAGAGAACAAACCGCTTTCTCACC
GATAGAGGCTCAAAGCGTACGGTCAACTCGGAAACAAAGAAGTGCTCTAT
CCAGCTTTTTTAAAGAATGGGGCCAGCAGGGCCTGAACACAAACAGAGAT
AGAGGGACGGGTTCCTTTTCGTTGCGACGCCTATCCTTTGGTCCGACAAG
GCTCCCGTCGTTTATTACGAAGCTATCCACACCTCGAAATACAAGGTCAA
ACATACAAACTCCAGCAGCGAGAGGAAGCACAAGAGACACCAAGAATAAT
ACAACGCCAACTCTGGAATACTCTAGCTTGGATAACGCCCTAAGTCAGGG
TGGAGTTGAAAACAAATCAAAAACTAGCGACGCATCAGAACTTCCGCAAA
AAGAAGAGGTCTTGCGAAAGGATGGAGGGCAGTAA
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