Gchil10063.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10063.t1
Unique NameGchil10063.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:653613..654164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5825.PCHAS_146230
PFAMsPkinase,Pkinase_C
Max annot lvl422676|Aconoidasida
KEGG koko:K08286
Evalue2.95e-13
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota,3Y9SG@5794|Apicomplexa,3KEHK@422676|Aconoidasida,3YZ76@5819|Haemosporida
DescriptionRAC-beta serine threonine protein
COG categoryT
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10063Gchil10063Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 653613..654164 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10063.t1.stop1Gchil10063.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 653613..653615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10063.t1.CDS1Gchil10063.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 653613..654164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10063.t1.exon1Gchil10063.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 653613..654164 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10063.t1.start1Gchil10063.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 654162..654164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10063.t1Gchil10063.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 653613..654164 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10063.t1 ID=Gchil10063.t1|Name=Gchil10063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=184bp
MTGEYPYKASRAKDLFERIKYDKVHIPPWLSPEAQHLLAGLLNKNPSERL
SVNTVKKHAFFRDINWNDVLNLHYEACIPDIHTGATPLDALHNFDLRHVE
DETVGEFTPEANKVIAQNVTQFVALENVLIGFEYVSTPFENVASPLSISS
KSGSLFSKIASIDVDPSQTIPGLNRKQSRISLL*
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spliced messenger RNA

>Gchil10063.t1 ID=Gchil10063.t1|Name=Gchil10063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00004442_pilon:653613..654164- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGCGAGTACCCTTACAAAGCATCAAGGGCAAAAGATCTATTTGA
AAGGATCAAGTATGACAAGGTGCACATACCACCGTGGTTGTCGCCTGAAG
CTCAACATCTTTTGGCCGGTCTCTTGAACAAAAATCCATCTGAAAGACTT
TCTGTGAATACCGTGAAGAAACATGCGTTCTTTCGGGATATAAATTGGAA
TGATGTTCTGAATCTCCACTACGAAGCTTGTATTCCTGATATACATACCG
GCGCGACCCCTTTAGATGCGTTGCACAATTTTGATCTTCGACATGTCGAA
GACGAAACTGTTGGGGAATTCACACCTGAGGCTAACAAGGTGATTGCGCA
GAATGTAACTCAATTTGTAGCTCTGGAGAATGTTTTGATTGGCTTCGAAT
ACGTGAGTACCCCGTTCGAAAATGTCGCCTCTCCCCTTTCCATATCTTCA
AAGTCAGGAAGTTTGTTTTCAAAAATTGCATCCATCGATGTTGATCCGAG
TCAAACAATTCCGGGCCTGAATCGAAAACAGAGTAGGATCTCCCTGTTAT
AA
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protein sequence of Gchil10063.t1

>Gchil10063.t1 ID=Gchil10063.t1|Name=Gchil10063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=184bp
MTGEYPYKASRAKDLFERIKYDKVHIPPWLSPEAQHLLAGLLNKNPSERL
SVNTVKKHAFFRDINWNDVLNLHYEACIPDIHTGATPLDALHNFDLRHVE
DETVGEFTPEANKVIAQNVTQFVALENVLIGFEYVSTPFENVASPLSISS
KSGSLFSKIASIDVDPSQTIPGLNRKQSRISLL*
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mRNA from alignment at tig00004442_pilon:653613..654164-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10063.t1 ID=Gchil10063.t1|Name=Gchil10063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=552bp|location=Sequence derived from alignment at tig00004442_pilon:653613..654164- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGGCGAGTACCCTTACAAAGCATCAAGGGCAAAAGATCTATTTGA
AAGGATCAAGTATGACAAGGTGCACATACCACCGTGGTTGTCGCCTGAAG
CTCAACATCTTTTGGCCGGTCTCTTGAACAAAAATCCATCTGAAAGACTT
TCTGTGAATACCGTGAAGAAACATGCGTTCTTTCGGGATATAAATTGGAA
TGATGTTCTGAATCTCCACTACGAAGCTTGTATTCCTGATATACATACCG
GCGCGACCCCTTTAGATGCGTTGCACAATTTTGATCTTCGACATGTCGAA
GACGAAACTGTTGGGGAATTCACACCTGAGGCTAACAAGGTGATTGCGCA
GAATGTAACTCAATTTGTAGCTCTGGAGAATGTTTTGATTGGCTTCGAAT
ACGTGAGTACCCCGTTCGAAAATGTCGCCTCTCCCCTTTCCATATCTTCA
AAGTCAGGAAGTTTGTTTTCAAAAATTGCATCCATCGATGTTGATCCGAG
TCAAACAATTCCGGGCCTGAATCGAAAACAGAGTAGGATCTCCCTGTTAT
AA
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Coding sequence (CDS) from alignment at tig00004442_pilon:653613..654164-

>Gchil10063.t1 ID=Gchil10063.t1|Name=Gchil10063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=552bp|location=Sequence derived from alignment at tig00004442_pilon:653613..654164- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGGCGAGTACCCTTACAAAGCATCAAGGGCAAAAGATCTATTTGA
AAGGATCAAGTATGACAAGGTGCACATACCACCGTGGTTGTCGCCTGAAG
CTCAACATCTTTTGGCCGGTCTCTTGAACAAAAATCCATCTGAAAGACTT
TCTGTGAATACCGTGAAGAAACATGCGTTCTTTCGGGATATAAATTGGAA
TGATGTTCTGAATCTCCACTACGAAGCTTGTATTCCTGATATACATACCG
GCGCGACCCCTTTAGATGCGTTGCACAATTTTGATCTTCGACATGTCGAA
GACGAAACTGTTGGGGAATTCACACCTGAGGCTAACAAGGTGATTGCGCA
GAATGTAACTCAATTTGTAGCTCTGGAGAATGTTTTGATTGGCTTCGAAT
ACGTGAGTACCCCGTTCGAAAATGTCGCCTCTCCCCTTTCCATATCTTCA
AAGTCAGGAAGTTTGTTTTCAAAAATTGCATCCATCGATGTTGATCCGAG
TCAAACAATTCCGGGCCTGAATCGAAAACAGAGTAGGATCTCCCTGTTAT
AA
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