Gchil10062.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10062.t1
Unique NameGchil10062.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length580
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:650661..652400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue4.14e-70
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10062Gchil10062Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 650661..652400 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10062.t1.stop1Gchil10062.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 650661..650663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10062.t1.CDS1Gchil10062.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 650661..652400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10062.t1.exon1Gchil10062.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 650661..652400 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10062.t1.start1Gchil10062.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 652398..652400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10062.t1Gchil10062.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 650661..652400 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10062.t1 ID=Gchil10062.t1|Name=Gchil10062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=580bp
MPEWTLLRNRYETRSGAIEMMVSKRRKPESLAAHFASLPNKKGLANSDEH
LKLFMGQALIASGEAYFKTARFQRTKRHHAEFRGSTIVVFRGENDGQSRK
FSITDVMSVFPLHQYHVCIEQRDDGSSRVCLGRNKAVDDEVMHVRIKRNE
EELEAWRQGLIKVIRYPLPNLSDLRIESIIGRGGGGKVFMVQSSQDTKLY
ALKVIDKIQTFKTAKGFRHVSSERLIMEKAGNHPFLLHVEFAFQSDAFLF
IASPFCPGGDLASYIKQKGIRGIPFDDRDYVLAAHSSHLKQYPRLTEEQA
RQIACEIILGLEHLHSRGIVYRDLKPENIFIDETGHLKIGDYGLAKQLIE
DGSKTQTFRTASICGTRNYLSPEMLIGKPYSFEADMWSFGVMLYRIITGS
FPFDAHRTKDVFQRIRNEDLHVPTWISREARDLLRGLLQKDPQERLTAEN
AKRHSFFQHIDWDAIFSKRCSPIVSNVCTDGKLSDVLENFDLSKLEGVSV
GDYLNGQIDDNSPHIPPPHQRDPRGFMIGFEYVQQDKSHMNEHSELLVKQ
RSGGLFSRITSIDFDQLTSPRSIFSSGSK*
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spliced messenger RNA

>Gchil10062.t1 ID=Gchil10062.t1|Name=Gchil10062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00004442_pilon:650661..652400- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAATGGACTCTTCTAAGAAATCGATACGAGACGAGGTCGGGGGC
CATAGAAATGATGGTATCCAAAAGACGCAAACCAGAGTCTTTGGCAGCCC
ACTTTGCCTCGCTTCCAAACAAAAAAGGACTGGCCAATTCTGATGAACAT
CTTAAATTGTTTATGGGACAAGCTTTAATAGCCTCTGGAGAAGCCTATTT
TAAGACAGCCAGGTTTCAGCGCACAAAGAGACACCATGCCGAGTTCCGAG
GGTCGACGATCGTTGTCTTTCGGGGGGAGAATGACGGTCAATCTCGGAAG
TTCTCTATTACTGACGTCATGTCCGTTTTTCCACTCCACCAGTACCATGT
TTGCATAGAACAGAGGGACGATGGTAGCTCTCGAGTGTGTTTAGGGAGAA
ACAAAGCAGTCGATGACGAGGTAATGCATGTTCGCATAAAACGAAATGAA
GAAGAACTAGAAGCCTGGCGACAAGGATTGATAAAAGTCATACGATACCC
ACTGCCAAATCTATCAGACCTTAGAATTGAATCTATTATTGGACGGGGTG
GTGGTGGAAAAGTATTCATGGTACAATCTTCACAGGATACCAAGTTATAC
GCTTTAAAGGTTATTGACAAAATCCAAACCTTCAAGACTGCCAAGGGCTT
TCGACACGTTTCTTCAGAGAGGCTAATCATGGAAAAGGCCGGGAATCACC
CATTTCTCCTTCATGTCGAATTCGCTTTTCAATCCGATGCCTTCTTATTC
ATCGCCTCACCGTTCTGCCCAGGGGGGGATTTGGCTTCGTACATCAAACA
AAAAGGGATCAGGGGTATACCATTTGACGACAGAGATTATGTTCTAGCCG
CACACTCCAGCCATCTAAAGCAGTATCCCAGACTAACCGAGGAGCAAGCA
AGGCAAATTGCGTGCGAAATTATTCTTGGCTTGGAGCATCTGCATTCACG
GGGGATAGTCTATCGAGATCTAAAGCCTGAAAACATCTTCATAGATGAGA
CTGGTCACTTGAAAATTGGGGACTACGGGTTAGCTAAGCAGTTAATCGAA
GACGGAAGCAAAACTCAAACCTTCAGAACCGCCAGCATATGCGGAACGAG
AAACTACTTGTCACCGGAAATGCTGATAGGCAAACCATACTCATTTGAAG
CAGACATGTGGAGTTTTGGGGTGATGCTATACAGAATTATAACAGGCTCA
TTTCCGTTTGATGCGCATCGAACCAAAGACGTATTTCAACGCATTAGAAA
CGAAGATTTACACGTTCCAACATGGATTTCACGGGAAGCCCGGGACCTCC
TTCGAGGTTTGTTGCAAAAGGATCCTCAGGAAAGACTGACGGCCGAGAAT
GCCAAACGCCATTCCTTCTTCCAACACATTGACTGGGATGCTATATTCAG
CAAAAGATGCTCCCCAATCGTGTCAAATGTTTGCACTGATGGAAAACTGT
CAGACGTCTTAGAAAACTTTGATCTCAGTAAGCTTGAGGGGGTAAGTGTT
GGGGATTATTTGAATGGACAAATCGACGATAATTCACCTCACATTCCCCC
GCCTCACCAACGAGACCCCAGAGGTTTTATGATTGGGTTTGAGTACGTGC
AACAAGACAAGTCACACATGAACGAACACTCGGAGCTATTAGTGAAGCAA
AGAAGCGGGGGTTTGTTTTCTAGGATTACATCAATAGATTTTGATCAACT
TACCTCCCCTAGATCTATATTTTCAAGCGGCAGTAAGTAG
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protein sequence of Gchil10062.t1

>Gchil10062.t1 ID=Gchil10062.t1|Name=Gchil10062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=580bp
MPEWTLLRNRYETRSGAIEMMVSKRRKPESLAAHFASLPNKKGLANSDEH
LKLFMGQALIASGEAYFKTARFQRTKRHHAEFRGSTIVVFRGENDGQSRK
FSITDVMSVFPLHQYHVCIEQRDDGSSRVCLGRNKAVDDEVMHVRIKRNE
EELEAWRQGLIKVIRYPLPNLSDLRIESIIGRGGGGKVFMVQSSQDTKLY
ALKVIDKIQTFKTAKGFRHVSSERLIMEKAGNHPFLLHVEFAFQSDAFLF
IASPFCPGGDLASYIKQKGIRGIPFDDRDYVLAAHSSHLKQYPRLTEEQA
RQIACEIILGLEHLHSRGIVYRDLKPENIFIDETGHLKIGDYGLAKQLIE
DGSKTQTFRTASICGTRNYLSPEMLIGKPYSFEADMWSFGVMLYRIITGS
FPFDAHRTKDVFQRIRNEDLHVPTWISREARDLLRGLLQKDPQERLTAEN
AKRHSFFQHIDWDAIFSKRCSPIVSNVCTDGKLSDVLENFDLSKLEGVSV
GDYLNGQIDDNSPHIPPPHQRDPRGFMIGFEYVQQDKSHMNEHSELLVKQ
RSGGLFSRITSIDFDQLTSPRSIFSSGSK*
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mRNA from alignment at tig00004442_pilon:650661..652400-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10062.t1 ID=Gchil10062.t1|Name=Gchil10062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00004442_pilon:650661..652400- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGAATGGACTCTTCTAAGAAATCGATACGAGACGAGGTCGGGGGC
CATAGAAATGATGGTATCCAAAAGACGCAAACCAGAGTCTTTGGCAGCCC
ACTTTGCCTCGCTTCCAAACAAAAAAGGACTGGCCAATTCTGATGAACAT
CTTAAATTGTTTATGGGACAAGCTTTAATAGCCTCTGGAGAAGCCTATTT
TAAGACAGCCAGGTTTCAGCGCACAAAGAGACACCATGCCGAGTTCCGAG
GGTCGACGATCGTTGTCTTTCGGGGGGAGAATGACGGTCAATCTCGGAAG
TTCTCTATTACTGACGTCATGTCCGTTTTTCCACTCCACCAGTACCATGT
TTGCATAGAACAGAGGGACGATGGTAGCTCTCGAGTGTGTTTAGGGAGAA
ACAAAGCAGTCGATGACGAGGTAATGCATGTTCGCATAAAACGAAATGAA
GAAGAACTAGAAGCCTGGCGACAAGGATTGATAAAAGTCATACGATACCC
ACTGCCAAATCTATCAGACCTTAGAATTGAATCTATTATTGGACGGGGTG
GTGGTGGAAAAGTATTCATGGTACAATCTTCACAGGATACCAAGTTATAC
GCTTTAAAGGTTATTGACAAAATCCAAACCTTCAAGACTGCCAAGGGCTT
TCGACACGTTTCTTCAGAGAGGCTAATCATGGAAAAGGCCGGGAATCACC
CATTTCTCCTTCATGTCGAATTCGCTTTTCAATCCGATGCCTTCTTATTC
ATCGCCTCACCGTTCTGCCCAGGGGGGGATTTGGCTTCGTACATCAAACA
AAAAGGGATCAGGGGTATACCATTTGACGACAGAGATTATGTTCTAGCCG
CACACTCCAGCCATCTAAAGCAGTATCCCAGACTAACCGAGGAGCAAGCA
AGGCAAATTGCGTGCGAAATTATTCTTGGCTTGGAGCATCTGCATTCACG
GGGGATAGTCTATCGAGATCTAAAGCCTGAAAACATCTTCATAGATGAGA
CTGGTCACTTGAAAATTGGGGACTACGGGTTAGCTAAGCAGTTAATCGAA
GACGGAAGCAAAACTCAAACCTTCAGAACCGCCAGCATATGCGGAACGAG
AAACTACTTGTCACCGGAAATGCTGATAGGCAAACCATACTCATTTGAAG
CAGACATGTGGAGTTTTGGGGTGATGCTATACAGAATTATAACAGGCTCA
TTTCCGTTTGATGCGCATCGAACCAAAGACGTATTTCAACGCATTAGAAA
CGAAGATTTACACGTTCCAACATGGATTTCACGGGAAGCCCGGGACCTCC
TTCGAGGTTTGTTGCAAAAGGATCCTCAGGAAAGACTGACGGCCGAGAAT
GCCAAACGCCATTCCTTCTTCCAACACATTGACTGGGATGCTATATTCAG
CAAAAGATGCTCCCCAATCGTGTCAAATGTTTGCACTGATGGAAAACTGT
CAGACGTCTTAGAAAACTTTGATCTCAGTAAGCTTGAGGGGGTAAGTGTT
GGGGATTATTTGAATGGACAAATCGACGATAATTCACCTCACATTCCCCC
GCCTCACCAACGAGACCCCAGAGGTTTTATGATTGGGTTTGAGTACGTGC
AACAAGACAAGTCACACATGAACGAACACTCGGAGCTATTAGTGAAGCAA
AGAAGCGGGGGTTTGTTTTCTAGGATTACATCAATAGATTTTGATCAACT
TACCTCCCCTAGATCTATATTTTCAAGCGGCAGTAAGTAG
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Coding sequence (CDS) from alignment at tig00004442_pilon:650661..652400-

>Gchil10062.t1 ID=Gchil10062.t1|Name=Gchil10062.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00004442_pilon:650661..652400- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGAATGGACTCTTCTAAGAAATCGATACGAGACGAGGTCGGGGGC
CATAGAAATGATGGTATCCAAAAGACGCAAACCAGAGTCTTTGGCAGCCC
ACTTTGCCTCGCTTCCAAACAAAAAAGGACTGGCCAATTCTGATGAACAT
CTTAAATTGTTTATGGGACAAGCTTTAATAGCCTCTGGAGAAGCCTATTT
TAAGACAGCCAGGTTTCAGCGCACAAAGAGACACCATGCCGAGTTCCGAG
GGTCGACGATCGTTGTCTTTCGGGGGGAGAATGACGGTCAATCTCGGAAG
TTCTCTATTACTGACGTCATGTCCGTTTTTCCACTCCACCAGTACCATGT
TTGCATAGAACAGAGGGACGATGGTAGCTCTCGAGTGTGTTTAGGGAGAA
ACAAAGCAGTCGATGACGAGGTAATGCATGTTCGCATAAAACGAAATGAA
GAAGAACTAGAAGCCTGGCGACAAGGATTGATAAAAGTCATACGATACCC
ACTGCCAAATCTATCAGACCTTAGAATTGAATCTATTATTGGACGGGGTG
GTGGTGGAAAAGTATTCATGGTACAATCTTCACAGGATACCAAGTTATAC
GCTTTAAAGGTTATTGACAAAATCCAAACCTTCAAGACTGCCAAGGGCTT
TCGACACGTTTCTTCAGAGAGGCTAATCATGGAAAAGGCCGGGAATCACC
CATTTCTCCTTCATGTCGAATTCGCTTTTCAATCCGATGCCTTCTTATTC
ATCGCCTCACCGTTCTGCCCAGGGGGGGATTTGGCTTCGTACATCAAACA
AAAAGGGATCAGGGGTATACCATTTGACGACAGAGATTATGTTCTAGCCG
CACACTCCAGCCATCTAAAGCAGTATCCCAGACTAACCGAGGAGCAAGCA
AGGCAAATTGCGTGCGAAATTATTCTTGGCTTGGAGCATCTGCATTCACG
GGGGATAGTCTATCGAGATCTAAAGCCTGAAAACATCTTCATAGATGAGA
CTGGTCACTTGAAAATTGGGGACTACGGGTTAGCTAAGCAGTTAATCGAA
GACGGAAGCAAAACTCAAACCTTCAGAACCGCCAGCATATGCGGAACGAG
AAACTACTTGTCACCGGAAATGCTGATAGGCAAACCATACTCATTTGAAG
CAGACATGTGGAGTTTTGGGGTGATGCTATACAGAATTATAACAGGCTCA
TTTCCGTTTGATGCGCATCGAACCAAAGACGTATTTCAACGCATTAGAAA
CGAAGATTTACACGTTCCAACATGGATTTCACGGGAAGCCCGGGACCTCC
TTCGAGGTTTGTTGCAAAAGGATCCTCAGGAAAGACTGACGGCCGAGAAT
GCCAAACGCCATTCCTTCTTCCAACACATTGACTGGGATGCTATATTCAG
CAAAAGATGCTCCCCAATCGTGTCAAATGTTTGCACTGATGGAAAACTGT
CAGACGTCTTAGAAAACTTTGATCTCAGTAAGCTTGAGGGGGTAAGTGTT
GGGGATTATTTGAATGGACAAATCGACGATAATTCACCTCACATTCCCCC
GCCTCACCAACGAGACCCCAGAGGTTTTATGATTGGGTTTGAGTACGTGC
AACAAGACAAGTCACACATGAACGAACACTCGGAGCTATTAGTGAAGCAA
AGAAGCGGGGGTTTGTTTTCTAGGATTACATCAATAGATTTTGATCAACT
TACCTCCCCTAGATCTATATTTTCAAGCGGCAGTAAGTAG
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